RNA–Protein interactions for RNA: ENST00000477520.1

PTCD3-212, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 4

Gene PTCD3, Length 556 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-212ENST00000477520 MPNDQ8N594 471 aa7.77□□□□□ -1.17
PTCD3-212ENST00000477520 NDUFV2P19404 249 aa7.76□□□□□ -1.17
PTCD3-212ENST00000477520 VARSP26640 1264 aaKnown RBP7.76□□□□□ -1.17
PTCD3-212ENST00000477520 SCARF1Q14162 830 aa7.76□□□□□ -1.17
PTCD3-212ENST00000477520 PLEKHG3A1L390 1219 aa7.75□□□□□ -1.17
PTCD3-212ENST00000477520 ADH1CP00326 375 aa7.75□□□□□ -1.17
PTCD3-212ENST00000477520 PRR7Q8TB68 274 aa7.75□□□□□ -1.17
PTCD3-212ENST00000477520 SPIRE2Q8WWL2 714 aa7.75□□□□□ -1.17
PTCD3-212ENST00000477520 MOXD2PA6NHM9 499 aa7.74□□□□□ -1.17
PTCD3-212ENST00000477520 HRCP23327 699 aa7.73□□□□□ -1.17
PTCD3-212ENST00000477520 KCTD17Q8N5Z5 321 aa7.73□□□□□ -1.17
PTCD3-212ENST00000477520 ZFAND3Q9H8U3 227 aa7.73□□□□□ -1.17
PTCD3-212ENST00000477520 PLCB2Q00722 1185 aa7.72□□□□□ -1.17
PTCD3-212ENST00000477520 KCNMA1Q12791 1236 aa7.72□□□□□ -1.17
PTCD3-212ENST00000477520 ZIC2O95409 532 aaPredicted RBP7.71□□□□□ -1.18
PTCD3-212ENST00000477520 SSTR3P32745 418 aaPredicted RBP7.71□□□□□ -1.18
PTCD3-212ENST00000477520 C6orf118Q5T5N4 469 aa7.71□□□□□ -1.18
PTCD3-212ENST00000477520 FOXJ1Q92949 421 aa7.71□□□□□ -1.18
PTCD3-212ENST00000477520 ITPKCQ96DU7 683 aa7.71□□□□□ -1.18
PTCD3-212ENST00000477520 ZCCHC6Q5VYS8 1495 aaKnown RBP7.7□□□□□ -1.18
PTCD3-212ENST00000477520 MAN1A2O60476 641 aa7.7□□□□□ -1.18
PTCD3-212ENST00000477520 PPFIA3O75145 1194 aa7.7□□□□□ -1.18
PTCD3-212ENST00000477520 NR3C2P08235 984 aa7.7□□□□□ -1.18
PTCD3-212ENST00000477520 CDK15Q96Q40 435 aa7.7□□□□□ -1.18
PTCD3-212ENST00000477520 KDM2AQ9Y2K7 1162 aa7.7□□□□□ -1.18
PTCD3-212ENST00000477520 MTMR2Q13614 643 aa7.69□□□□□ -1.18
PTCD3-212ENST00000477520 ARID5BQ14865 1188 aa7.69□□□□□ -1.18
PTCD3-212ENST00000477520 DESI1Q6ICB0 168 aa7.69□□□□□ -1.18
PTCD3-212ENST00000477520 KRI1Q8N9T8 703 aaKnown RBP7.69□□□□□ -1.18
PTCD3-212ENST00000477520 FAM174AQ8TBP5 190 aa7.69□□□□□ -1.18
PTCD3-212ENST00000477520 CTHP32929 405 aa7.68□□□□□ -1.18
PTCD3-212ENST00000477520 KRT76Q01546 638 aa7.68□□□□□ -1.18
PTCD3-212ENST00000477520 GRM5P41594 1212 aa7.67□□□□□ -1.18
PTCD3-212ENST00000477520 C4orf48Q5BLP8 95 aa7.67□□□□□ -1.18
PTCD3-212ENST00000477520 LYPD8Q6UX82 237 aa7.67□□□□□ -1.18
PTCD3-212ENST00000477520 GPR161Q8N6U8 529 aaKnown RBP7.67□□□□□ -1.18
PTCD3-212ENST00000477520 MAP10Q9P2G4 905 aa7.67□□□□□ -1.18
PTCD3-212ENST00000477520 DCAF1Q9Y4B6 1507 aa7.67□□□□□ -1.18
PTCD3-212ENST00000477520 DNMT3LQ9UJW3 386 aa7.66□□□□□ -1.18
PTCD3-212ENST00000477520 MYO15BQ96JP2 1530 aa7.66□□□□□ -1.18
PTCD3-212ENST00000477520 NACADO15069 1562 aa7.66□□□□□ -1.18
PTCD3-212ENST00000477520 SPDYE5A6NIY4 337 aa7.65□□□□□ -1.18
PTCD3-212ENST00000477520 CFAP99D6REC4 459 aa7.65□□□□□ -1.18
PTCD3-212ENST00000477520 F12P00748 615 aaPredicted RBP7.65□□□□□ -1.18
PTCD3-212ENST00000477520 BMP2P12643 396 aa7.65□□□□□ -1.18
PTCD3-212ENST00000477520 LINC00528Q8N1L1 170 aa7.65□□□□□ -1.18
PTCD3-212ENST00000477520 SOS2Q07890 1332 aaPredicted RBP7.64□□□□□ -1.19
PTCD3-212ENST00000477520 RASSF7Q02833 373 aa7.64□□□□□ -1.19
PTCD3-212ENST00000477520 NR5A1Q13285 461 aa7.64□□□□□ -1.19
PTCD3-212ENST00000477520 MEIOBQ8N635 442 aa7.64□□□□□ -1.19
PTCD3-212ENST00000477520 PCDHB15Q9Y5E8 787 aa7.64□□□□□ -1.19
PTCD3-212ENST00000477520 RB1CC1Q8TDY2 1594 aa7.63□□□□□ -1.19
PTCD3-212ENST00000477520 TULP1O00294 542 aaPredicted RBP7.62□□□□□ -1.19
PTCD3-212ENST00000477520 GDF11O95390 407 aa7.62□□□□□ -1.19
PTCD3-212ENST00000477520 TMEM151AQ8N4L1 468 aa7.62□□□□□ -1.19
PTCD3-212ENST00000477520 CNTNAP3BQ96NU0 1288 aa7.62□□□□□ -1.19
PTCD3-212ENST00000477520 CNTNAP3Q9BZ76 1288 aa7.62□□□□□ -1.19
PTCD3-212ENST00000477520 ADAMTS8Q9UP79 889 aa7.62□□□□□ -1.19
PTCD3-212ENST00000477520 TTLL12Q14166 644 aaPredicted RBP7.61□□□□□ -1.19
PTCD3-212ENST00000477520 RSBN1LQ6PCB5 846 aaPredicted RBP7.61□□□□□ -1.19
PTCD3-212ENST00000477520 PER1O15534 1290 aaPredicted RBP7.6□□□□□ -1.19
PTCD3-212ENST00000477520 GIGYF2Q6Y7W6 1299 aaKnown RBP7.6□□□□□ -1.19
PTCD3-212ENST00000477520 BEGAINQ9BUH8 593 aa7.6□□□□□ -1.19
PTCD3-212ENST00000477520 TBC1D2Q9BYX2 928 aa7.6□□□□□ -1.19
PTCD3-212ENST00000477520 UPP2O95045 317 aa7.59□□□□□ -1.19
PTCD3-212ENST00000477520 HAP1P54257 671 aaPredicted RBP7.59□□□□□ -1.19
PTCD3-212ENST00000477520 AGERQ15109 404 aa7.59□□□□□ -1.19
PTCD3-212ENST00000477520 SPTLC1O15269 473 aa7.58□□□□□ -1.2
PTCD3-212ENST00000477520 FSHRP23945 695 aa7.58□□□□□ -1.2
PTCD3-212ENST00000477520 GJA5P36382 358 aa7.58□□□□□ -1.2
PTCD3-212ENST00000477520 AMHR2Q16671 573 aa7.58□□□□□ -1.2
PTCD3-212ENST00000477520 RNFT1Q5M7Z0 435 aa7.58□□□□□ -1.2
PTCD3-212ENST00000477520 BPHLQ86WA6 291 aaPredicted RBP7.58□□□□□ -1.2
PTCD3-212ENST00000477520 CABLES1Q8TDN4 633 aa7.58□□□□□ -1.2
PTCD3-212ENST00000477520 C1QTNF2Q9BXJ5 285 aa7.58□□□□□ -1.2
PTCD3-212ENST00000477520 COL25A1Q9BXS0 654 aaPredicted RBP7.58□□□□□ -1.2
PTCD3-212ENST00000477520 PTSQ03393 145 aa7.57□□□□□ -1.2
PTCD3-212ENST00000477520 ZNF385CQ66K41 422 aaPredicted RBP7.57□□□□□ -1.2
PTCD3-212ENST00000477520 WHAMMQ8TF30 809 aa7.57□□□□□ -1.2
PTCD3-212ENST00000477520 FIGNL2A6NMB9 653 aa7.56□□□□□ -1.2
PTCD3-212ENST00000477520 DHX30Q7L2E3 1194 aaKnown RBP eCLIP7.56□□□□□ -1.2
PTCD3-212ENST00000477520 TSEN34Q9BSV6 310 aaKnown RBP7.56□□□□□ -1.2
PTCD3-212ENST00000477520 ZBTB3Q9H5J0 574 aa7.56□□□□□ -1.2
PTCD3-212ENST00000477520 TTLL8A6PVC2 850 aa7.55□□□□□ -1.2
PTCD3-212ENST00000477520 ZNF800Q2TB10 664 aaPredicted RBP eCLIP7.55□□□□□ -1.2
PTCD3-212ENST00000477520 SH3RF1Q7Z6J0 888 aa7.55□□□□□ -1.2
PTCD3-212ENST00000477520 NANOS1Q8WY41 292 aaKnown RBP7.54□□□□□ -1.2
PTCD3-212ENST00000477520 MAP4K5Q9Y4K4 846 aa7.54□□□□□ -1.2
PTCD3-212ENST00000477520 RNF225M0QZC1 329 aaPredicted RBP7.53□□□□□ -1.2
PTCD3-212ENST00000477520 CBLBQ13191 982 aa7.53□□□□□ -1.2
PTCD3-212ENST00000477520 CSPP1Q1MSJ5 1256 aa7.53□□□□□ -1.2
PTCD3-212ENST00000477520 BARGINQ6ZT62 677 aa7.53□□□□□ -1.2
PTCD3-212ENST00000477520 VASH1Q7L8A9 365 aaPredicted RBP7.53□□□□□ -1.2
PTCD3-212ENST00000477520 SH3BP5LQ7L8J4 393 aa7.53□□□□□ -1.2
PTCD3-212ENST00000477520 SVOPQ8N4V2 548 aa7.53□□□□□ -1.2
PTCD3-212ENST00000477520 CCDC155Q8N6L0 562 aa7.53□□□□□ -1.2
PTCD3-212ENST00000477520 ARHGEF15O94989 841 aa7.52□□□□□ -1.21
PTCD3-212ENST00000477520 PRPF38BQ5VTL8 546 aaKnown RBP7.52□□□□□ -1.21
PTCD3-212ENST00000477520 RIC3Q7Z5B4 369 aa7.52□□□□□ -1.21
PTCD3-212ENST00000477520 TRMT44Q8IYL2 757 aaKnown RBP7.52□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 44.3 ms