RNA–Protein interactions for RNA: ENST00000477085.1

COL4A6-206, Transcript of collagen type IV alpha 6 chain, humanhuman

TSL 1 (best)

Gene COL4A6, Length 1,784 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A6-206ENST00000477085 TMEM94Q12767 1356 aa19.38■□□□□ 0.69
COL4A6-206ENST00000477085 ZBED9Q6R2W3 1325 aa19.37■□□□□ 0.69
COL4A6-206ENST00000477085 NGDNQ8NEJ9 315 aaKnown RBP19.37■□□□□ 0.69
COL4A6-206ENST00000477085 BLMP54132 1417 aaPredicted RBP19.36■□□□□ 0.69
COL4A6-206ENST00000477085 C19orf44Q9H6X5 657 aa19.36■□□□□ 0.69
COL4A6-206ENST00000477085 INSRP06213 1382 aa19.36■□□□□ 0.69
COL4A6-206ENST00000477085 PHF8Q9UPP1 1060 aa19.34■□□□□ 0.69
COL4A6-206ENST00000477085 WDR43Q15061 677 aaKnown RBP eCLIP19.34■□□□□ 0.69
COL4A6-206ENST00000477085 ORAI2Q96SN7 254 aa19.34■□□□□ 0.69
COL4A6-206ENST00000477085 ZNF335Q9H4Z2 1342 aaPredicted RBP19.33■□□□□ 0.69
COL4A6-206ENST00000477085 ESCO1Q5FWF5 840 aa19.33■□□□□ 0.68
COL4A6-206ENST00000477085 POLKQ9UBT6 870 aa19.33■□□□□ 0.68
COL4A6-206ENST00000477085 SHPRHQ149N8 1683 aa19.33■□□□□ 0.68
COL4A6-206ENST00000477085 SCAF1Q9H7N4 1312 aaKnown RBP19.33■□□□□ 0.68
COL4A6-206ENST00000477085 COG3Q96JB2 828 aa19.32■□□□□ 0.68
COL4A6-206ENST00000477085 NCOA3Q9Y6Q9 1424 aa19.32■□□□□ 0.68
COL4A6-206ENST00000477085 OVOS2A0A0J9YW53 1432 aa19.31■□□□□ 0.68
COL4A6-206ENST00000477085 OVOS2Q6IE36 1432 aa19.31■□□□□ 0.68
COL4A6-206ENST00000477085 COL3A1P02461 1466 aaPredicted RBP19.31■□□□□ 0.68
COL4A6-206ENST00000477085 PNPLA6Q8IY17 1366 aa19.3■□□□□ 0.68
COL4A6-206ENST00000477085 TTC21AQ8NDW8 1320 aa19.3■□□□□ 0.68
COL4A6-206ENST00000477085 C1orf167Q5SNV9 1468 aa19.29■□□□□ 0.68
COL4A6-206ENST00000477085 AATKQ6ZMQ8 1374 aa19.29■□□□□ 0.68
COL4A6-206ENST00000477085 CFAP53Q96M91 514 aa19.29■□□□□ 0.68
COL4A6-206ENST00000477085 EMILIN1Q9Y6C2 1016 aa19.29■□□□□ 0.68
COL4A6-206ENST00000477085 CCDC146Q8IYE0 955 aa19.28■□□□□ 0.68
COL4A6-206ENST00000477085 LRRC7Q96NW7 1537 aa19.28■□□□□ 0.68
COL4A6-206ENST00000477085 SALL2Q9Y467 1007 aaPredicted RBP19.27■□□□□ 0.68
COL4A6-206ENST00000477085 XIRP1Q702N8 1843 aaKnown RBP19.27■□□□□ 0.68
COL4A6-206ENST00000477085 MST1RQ04912 1400 aa19.27■□□□□ 0.68
COL4A6-206ENST00000477085 RRS1Q15050 365 aaKnown RBP19.27■□□□□ 0.67
COL4A6-206ENST00000477085 PIK3C2AO00443 1686 aa19.26■□□□□ 0.67
COL4A6-206ENST00000477085 USP31Q70CQ4 1352 aa19.26■□□□□ 0.67
COL4A6-206ENST00000477085 DCCP43146 1447 aa19.26■□□□□ 0.67
COL4A6-206ENST00000477085 SMG6Q86US8 1419 aaKnown RBP19.26■□□□□ 0.67
COL4A6-206ENST00000477085 FOXO3O43524 673 aa19.25■□□□□ 0.67
COL4A6-206ENST00000477085 ATF3P18847 181 aa19.25■□□□□ 0.67
COL4A6-206ENST00000477085 PPM1GO15355 546 aaPredicted RBP19.24■□□□□ 0.67
COL4A6-206ENST00000477085 PSME1Q06323 249 aa19.24■□□□□ 0.67
COL4A6-206ENST00000477085 NUTM2GQ5VZR2 741 aa19.24■□□□□ 0.67
COL4A6-206ENST00000477085 GTF3C3Q9Y5Q9 886 aa19.24■□□□□ 0.67
COL4A6-206ENST00000477085 MAP2P11137 1827 aaKnown RBP19.24■□□□□ 0.67
COL4A6-206ENST00000477085 PAK3O75914 559 aaPredicted RBP19.23■□□□□ 0.67
COL4A6-206ENST00000477085 XPCQ01831 940 aaPredicted RBP19.22■□□□□ 0.67
COL4A6-206ENST00000477085 DMRT2Q9Y5R5 561 aa19.22■□□□□ 0.67
COL4A6-206ENST00000477085 NLRP6P59044 892 aa19.21■□□□□ 0.67
COL4A6-206ENST00000477085 CADPS2Q86UW7 1296 aa19.21■□□□□ 0.67
COL4A6-206ENST00000477085 ABTB2Q8N961 1025 aa19.21■□□□□ 0.67
COL4A6-206ENST00000477085 MSH6P52701 1360 aa19.21■□□□□ 0.67
COL4A6-206ENST00000477085 MARF1Q9Y4F3 1742 aaKnown RBP19.21■□□□□ 0.67
COL4A6-206ENST00000477085 APAF1O14727 1248 aa19.21■□□□□ 0.67
COL4A6-206ENST00000477085 DIAPH1O60610 1272 aaKnown RBP19.21■□□□□ 0.67
COL4A6-206ENST00000477085 U2AF1L5P0DN76 240 aaPredicted RBP19.2■□□□□ 0.66
COL4A6-206ENST00000477085 U2AF1Q01081 240 aaKnown RBP eCLIP19.2■□□□□ 0.66
COL4A6-206ENST00000477085 SOX12O15370 315 aa19.19■□□□□ 0.66
COL4A6-206ENST00000477085 CDK12Q9NYV4 1490 aaPredicted RBP19.19■□□□□ 0.66
COL4A6-206ENST00000477085 IL13P35225 146 aa19.19■□□□□ 0.66
COL4A6-206ENST00000477085 DDX17Q92841 729 aaKnown RBP19.19■□□□□ 0.66
COL4A6-206ENST00000477085 U2SURPO15042 1029 aaKnown RBP19.18■□□□□ 0.66
COL4A6-206ENST00000477085 ZNF521Q96K83 1311 aa19.17■□□□□ 0.66
COL4A6-206ENST00000477085 KRT28Q7Z3Y7 464 aa19.17■□□□□ 0.66
COL4A6-206ENST00000477085 RUNDC1Q96C34 613 aa19.17■□□□□ 0.66
COL4A6-206ENST00000477085 CDCA7LQ96GN5 454 aa19.17■□□□□ 0.66
COL4A6-206ENST00000477085 PLEKHF1Q96S99 279 aa19.17■□□□□ 0.66
COL4A6-206ENST00000477085 PEAK1Q9H792 1746 aa19.17■□□□□ 0.66
COL4A6-206ENST00000477085 NUDCQ9Y266 331 aa19.17■□□□□ 0.66
COL4A6-206ENST00000477085 USP54Q70EL1 1684 aa19.17■□□□□ 0.66
COL4A6-206ENST00000477085 MAP3K19Q56UN5 1328 aa19.17■□□□□ 0.66
COL4A6-206ENST00000477085 KIF1AQ12756 1690 aa19.16■□□□□ 0.66
COL4A6-206ENST00000477085 TRPM3Q9HCF6 1732 aaPredicted RBP19.15■□□□□ 0.66
COL4A6-206ENST00000477085 HSP90AB2PQ58FF8 381 aa19.14■□□□□ 0.66
COL4A6-206ENST00000477085 IQSEC2Q5JU85 1478 aa19.14■□□□□ 0.65
COL4A6-206ENST00000477085 TCP11L2Q8N4U5 519 aa19.14■□□□□ 0.65
COL4A6-206ENST00000477085 PDE3BQ13370 1112 aa19.12■□□□□ 0.65
COL4A6-206ENST00000477085 EIF4A2Q14240 407 aaKnown RBP19.12■□□□□ 0.65
COL4A6-206ENST00000477085 BRINP3Q76B58 766 aa19.12■□□□□ 0.65
COL4A6-206ENST00000477085 SLAIN2Q9P270 581 aa19.12■□□□□ 0.65
COL4A6-206ENST00000477085 RRP7AQ9Y3A4 280 aaKnown RBP19.11■□□□□ 0.65
COL4A6-206ENST00000477085 RSPH6AQ9H0K4 717 aa19.11■□□□□ 0.65
COL4A6-206ENST00000477085 SUPT16HQ9Y5B9 1047 aaKnown RBP19.1■□□□□ 0.65
COL4A6-206ENST00000477085 SBNO1A3KN83 1393 aa19.1■□□□□ 0.65
COL4A6-206ENST00000477085 HMOX1P09601 288 aa19.09■□□□□ 0.65
COL4A6-206ENST00000477085 PHF23Q9BUL5 403 aaPredicted RBP19.09■□□□□ 0.65
COL4A6-206ENST00000477085 NFAT5O94916 1531 aa19.09■□□□□ 0.65
COL4A6-206ENST00000477085 FCHSD2O94868 740 aa19.09■□□□□ 0.65
COL4A6-206ENST00000477085 SPINK5Q9NQ38 1064 aaPredicted RBP19.09■□□□□ 0.65
COL4A6-206ENST00000477085 PXDNQ92626 1479 aa19.08■□□□□ 0.65
COL4A6-206ENST00000477085 NEUROD2Q15784 382 aa19.08■□□□□ 0.64
COL4A6-206ENST00000477085 WWC1Q8IX03 1113 aa19.08■□□□□ 0.64
COL4A6-206ENST00000477085 LMOD2Q6P5Q4 547 aa19.07■□□□□ 0.64
COL4A6-206ENST00000477085 NPHP3Q7Z494 1330 aa19.07■□□□□ 0.64
COL4A6-206ENST00000477085 FLT4P35916 1363 aa19.07■□□□□ 0.64
COL4A6-206ENST00000477085 LTBP4Q8N2S1 1624 aa19.07■□□□□ 0.64
COL4A6-206ENST00000477085 ALS2Q96Q42 1657 aa19.07■□□□□ 0.64
COL4A6-206ENST00000477085 HOXC9P31274 260 aa19.06■□□□□ 0.64
COL4A6-206ENST00000477085 PRKAR2BP31323 418 aa19.06■□□□□ 0.64
COL4A6-206ENST00000477085 AMPHP49418 695 aa19.06■□□□□ 0.64
COL4A6-206ENST00000477085 NGEFQ8N5V2 710 aa19.06■□□□□ 0.64
COL4A6-206ENST00000477085 PHACTR3Q96KR7 559 aa19.06■□□□□ 0.64
COL4A6-206ENST00000477085 USP19O94966 1318 aa19.06■□□□□ 0.64
Retrieved 100 of 20,778 RNA–protein pairs in 57.8 ms