RNA–Protein interactions for RNA: ENST00000476724.1

TMEM53-208, Transcript of transmembrane protein 53, humanhuman

TSL 1 (best)

Gene TMEM53, Length 2,075 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TMEM53-208ENST00000476724 ANKLE2Q86XL3 938 aa21.43■■□□□ 1.02
TMEM53-208ENST00000476724 RUNDC1Q96C34 613 aa21.43■■□□□ 1.02
TMEM53-208ENST00000476724 PPIP5K1Q6PFW1 1433 aa21.41■■□□□ 1.02
TMEM53-208ENST00000476724 IPO9Q96P70 1041 aaKnown RBP21.41■■□□□ 1.02
TMEM53-208ENST00000476724 NOP58Q9Y2X3 529 aaKnown RBP21.41■■□□□ 1.02
TMEM53-208ENST00000476724 WWC1Q8IX03 1113 aa21.41■■□□□ 1.02
TMEM53-208ENST00000476724 NUDT16Q96DE0 195 aaKnown RBP21.41■■□□□ 1.02
TMEM53-208ENST00000476724 SPINK5Q9NQ38 1064 aaPredicted RBP21.41■■□□□ 1.02
TMEM53-208ENST00000476724 ATP7BP35670 1465 aa21.41■■□□□ 1.02
TMEM53-208ENST00000476724 PRR36Q9H6K5 1346 aa21.4■■□□□ 1.02
TMEM53-208ENST00000476724 PTCH1Q13635 1447 aa21.4■■□□□ 1.02
TMEM53-208ENST00000476724 CENPQQ7L2Z9 268 aaPredicted RBP21.4■■□□□ 1.02
TMEM53-208ENST00000476724 HDGFL2Q7Z4V5 671 aaPredicted RBP21.4■■□□□ 1.02
TMEM53-208ENST00000476724 ANKRD26Q9UPS8 1709 aa21.4■■□□□ 1.02
TMEM53-208ENST00000476724 PDE4AP27815 886 aa21.4■■□□□ 1.02
TMEM53-208ENST00000476724 MTHFSP49914 203 aa21.4■■□□□ 1.02
TMEM53-208ENST00000476724 KIF20BQ96Q89 1820 aa21.39■■□□□ 1.01
TMEM53-208ENST00000476724 KDM2BQ8NHM5 1336 aa21.39■■□□□ 1.01
TMEM53-208ENST00000476724 BACH2Q9BYV9 841 aa21.38■■□□□ 1.01
TMEM53-208ENST00000476724 GGNBP2Q9H3C7 697 aa21.38■■□□□ 1.01
TMEM53-208ENST00000476724 FYB1O15117 783 aa21.37■■□□□ 1.01
TMEM53-208ENST00000476724 KCNA6P17658 529 aa21.37■■□□□ 1.01
TMEM53-208ENST00000476724 CHD2O14647 1828 aaKnown RBP21.37■■□□□ 1.01
TMEM53-208ENST00000476724 CPSF1Q10570 1443 aaKnown RBP21.36■■□□□ 1.01
TMEM53-208ENST00000476724 NUTM2FA1L443 756 aa21.36■■□□□ 1.01
TMEM53-208ENST00000476724 CCDC27Q2M243 656 aa21.36■■□□□ 1.01
TMEM53-208ENST00000476724 WDR63Q8IWG1 891 aa21.36■■□□□ 1.01
TMEM53-208ENST00000476724 PHF23Q9BUL5 403 aaPredicted RBP21.36■■□□□ 1.01
TMEM53-208ENST00000476724 IQSEC2Q5JU85 1478 aa21.36■■□□□ 1.01
TMEM53-208ENST00000476724 CDC42BPGQ6DT37 1551 aa21.35■■□□□ 1.01
TMEM53-208ENST00000476724 CCDC61Q9Y6R9 512 aa21.35■■□□□ 1.01
TMEM53-208ENST00000476724 TOPAZ1Q8N9V7 1692 aa21.35■■□□□ 1.01
TMEM53-208ENST00000476724 AKAP12Q02952 1782 aa21.34■■□□□ 1.01
TMEM53-208ENST00000476724 PIK3R4Q99570 1358 aa21.34■■□□□ 1.01
TMEM53-208ENST00000476724 PDE3AQ14432 1141 aa21.34■■□□□ 1.01
TMEM53-208ENST00000476724 TCP11L2Q8N4U5 519 aa21.34■■□□□ 1.01
TMEM53-208ENST00000476724 ITSN1Q15811 1721 aa21.34■■□□□ 1.01
TMEM53-208ENST00000476724 MON2Q7Z3U7 1717 aa21.34■■□□□ 1.01
TMEM53-208ENST00000476724 SUGP2Q8IX01 1082 aaKnown RBP eCLIP21.33■■□□□ 1.01
TMEM53-208ENST00000476724 DMRT2Q9Y5R5 561 aa21.33■■□□□ 1
TMEM53-208ENST00000476724 ZBTB47Q9UFB7 747 aaPredicted RBP21.32■■□□□ 1
TMEM53-208ENST00000476724 RGPD8O14715 1765 aaPredicted RBP21.32■■□□□ 1
TMEM53-208ENST00000476724 NPHP4O75161 1426 aaPredicted RBP21.31■■□□□ 1
TMEM53-208ENST00000476724 BCAR3O75815 825 aa21.31■■□□□ 1
TMEM53-208ENST00000476724 EDC4Q6P2E9 1401 aaKnown RBP21.29■■□□□ 1
TMEM53-208ENST00000476724 AAMPQ13685 434 aa21.27■□□□□ 0.99
TMEM53-208ENST00000476724 NALCNQ8IZF0 1738 aa21.26■□□□□ 0.99
TMEM53-208ENST00000476724 NEUROD2Q15784 382 aa21.26■□□□□ 0.99
TMEM53-208ENST00000476724 RBM33Q96EV2 1170 aaKnown RBP21.26■□□□□ 0.99
TMEM53-208ENST00000476724 U2AF1L5P0DN76 240 aaPredicted RBP21.25■□□□□ 0.99
TMEM53-208ENST00000476724 U2AF1Q01081 240 aaKnown RBP eCLIP21.25■□□□□ 0.99
TMEM53-208ENST00000476724 NME9Q86XW9 330 aa21.25■□□□□ 0.99
TMEM53-208ENST00000476724 PAK3O75914 559 aaPredicted RBP21.25■□□□□ 0.99
TMEM53-208ENST00000476724 ZRANB1Q9UGI0 708 aa21.25■□□□□ 0.99
TMEM53-208ENST00000476724 NRKQ7Z2Y5 1582 aa21.24■□□□□ 0.99
TMEM53-208ENST00000476724 ACEP12821 1306 aa21.24■□□□□ 0.99
TMEM53-208ENST00000476724 FBLN1P23142 703 aa21.24■□□□□ 0.99
TMEM53-208ENST00000476724 MYH16Q9H6N6 1097 aa21.24■□□□□ 0.99
TMEM53-208ENST00000476724 RRP7AQ9Y3A4 280 aaKnown RBP21.24■□□□□ 0.99
TMEM53-208ENST00000476724 PLEKHG3A1L390 1219 aa21.24■□□□□ 0.99
TMEM53-208ENST00000476724 FMN2Q9NZ56 1722 aa21.23■□□□□ 0.99
TMEM53-208ENST00000476724 CANXP27824 592 aaKnown RBP21.22■□□□□ 0.99
TMEM53-208ENST00000476724 RARSP54136 660 aaKnown RBP21.22■□□□□ 0.99
TMEM53-208ENST00000476724 ZNF692Q9BU19 519 aaPredicted RBP21.22■□□□□ 0.99
TMEM53-208ENST00000476724 KDM4FA0A1W2PPD8 638 aa21.21■□□□□ 0.99
TMEM53-208ENST00000476724 PMFBP1Q8TBY8 1022 aa21.21■□□□□ 0.99
TMEM53-208ENST00000476724 MAP2P11137 1827 aaKnown RBP21.21■□□□□ 0.99
TMEM53-208ENST00000476724 CT47B1P0C2W7 299 aaPredicted RBP21.2■□□□□ 0.99
TMEM53-208ENST00000476724 COL3A1P02461 1466 aaPredicted RBP21.2■□□□□ 0.98
TMEM53-208ENST00000476724 NPM2Q86SE8 214 aaKnown RBP21.2■□□□□ 0.98
TMEM53-208ENST00000476724 PNNQ9H307 717 aaKnown RBP21.2■□□□□ 0.98
TMEM53-208ENST00000476724 USP6P35125 1406 aa21.19■□□□□ 0.98
TMEM53-208ENST00000476724 FAM161AQ3B820 660 aa21.18■□□□□ 0.98
TMEM53-208ENST00000476724 CLUAP1Q96AJ1 413 aa21.18■□□□□ 0.98
TMEM53-208ENST00000476724 DDRGK1Q96HY6 314 aa21.17■□□□□ 0.98
TMEM53-208ENST00000476724 PLEKHF1Q96S99 279 aa21.17■□□□□ 0.98
TMEM53-208ENST00000476724 TTC21BQ7Z4L5 1316 aa21.17■□□□□ 0.98
TMEM53-208ENST00000476724 NWD1Q149M9 1564 aa21.17■□□□□ 0.98
TMEM53-208ENST00000476724 HSPA2P54652 639 aa21.17■□□□□ 0.98
TMEM53-208ENST00000476724 PNPLA6Q8IY17 1366 aa21.17■□□□□ 0.98
TMEM53-208ENST00000476724 SKAP1Q86WV1 359 aa21.16■□□□□ 0.98
TMEM53-208ENST00000476724 ANKARQ7Z5J8 1434 aa21.16■□□□□ 0.98
TMEM53-208ENST00000476724 POLKQ9UBT6 870 aa21.16■□□□□ 0.98
TMEM53-208ENST00000476724 SSH2Q76I76 1423 aa21.15■□□□□ 0.98
TMEM53-208ENST00000476724 MAPK8IP3Q9UPT6 1336 aa21.15■□□□□ 0.98
TMEM53-208ENST00000476724 U2SURPO15042 1029 aaKnown RBP21.14■□□□□ 0.98
TMEM53-208ENST00000476724 ADGRL3Q9HAR2 1447 aa21.14■□□□□ 0.97
TMEM53-208ENST00000476724 DIAPH1O60610 1272 aaKnown RBP21.14■□□□□ 0.97
TMEM53-208ENST00000476724 TMPOP42166 694 aaKnown RBP21.14■□□□□ 0.97
TMEM53-208ENST00000476724 PANK1Q8TE04 598 aa21.14■□□□□ 0.97
TMEM53-208ENST00000476724 FRAT1Q92837 279 aaPredicted RBP21.14■□□□□ 0.97
TMEM53-208ENST00000476724 COG3Q96JB2 828 aa21.14■□□□□ 0.97
TMEM53-208ENST00000476724 COG6Q9Y2V7 657 aa21.14■□□□□ 0.97
TMEM53-208ENST00000476724 IL16Q14005 1332 aa21.13■□□□□ 0.97
TMEM53-208ENST00000476724 NGDNQ8NEJ9 315 aaKnown RBP21.13■□□□□ 0.97
TMEM53-208ENST00000476724 EMILIN1Q9Y6C2 1016 aa21.13■□□□□ 0.97
TMEM53-208ENST00000476724 PPM1GO15355 546 aaPredicted RBP21.12■□□□□ 0.97
TMEM53-208ENST00000476724 IGHDP01880 384 aa21.11■□□□□ 0.97
TMEM53-208ENST00000476724 C8orf34Q49A92 452 aa21.11■□□□□ 0.97
TMEM53-208ENST00000476724 STRCP1A6NGW2 1772 aa21.11■□□□□ 0.97
Retrieved 100 of 20,778 RNA–protein pairs in 43.4 ms