RNA–Protein interactions for RNA: ENST00000476395.1

VAPB-205, Transcript of VAMP associated protein B and C, humanhuman

TSL 2

Gene VAPB, Length 3,583 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAPB-205ENST00000476395 CLCN1P35523 988 aa10.71□□□□□ -0.69
VAPB-205ENST00000476395 TCP11L2Q8N4U5 519 aa10.71□□□□□ -0.7
VAPB-205ENST00000476395 DIP2CQ9Y2E4 1556 aa10.71□□□□□ -0.7
VAPB-205ENST00000476395 ARID3AQ99856 593 aa10.7□□□□□ -0.7
VAPB-205ENST00000476395 PTPRMP28827 1452 aa10.7□□□□□ -0.7
VAPB-205ENST00000476395 RICTORQ6R327 1708 aa10.7□□□□□ -0.7
VAPB-205ENST00000476395 PLEKHF1Q96S99 279 aa10.7□□□□□ -0.7
VAPB-205ENST00000476395 TRAK1Q9UPV9 953 aa10.7□□□□□ -0.7
VAPB-205ENST00000476395 TMEM131LA2VDJ0 1609 aa10.7□□□□□ -0.7
VAPB-205ENST00000476395 CGNL1Q0VF96 1302 aa10.7□□□□□ -0.7
VAPB-205ENST00000476395 CCDC27Q2M243 656 aa10.7□□□□□ -0.7
VAPB-205ENST00000476395 GOLGA6L2Q8N9W4 650 aaPredicted RBP10.69□□□□□ -0.7
VAPB-205ENST00000476395 RUNDC1Q96C34 613 aa10.69□□□□□ -0.7
VAPB-205ENST00000476395 SETD1AO15047 1707 aaKnown RBP10.69□□□□□ -0.7
VAPB-205ENST00000476395 NGEFQ8N5V2 710 aa10.69□□□□□ -0.7
VAPB-205ENST00000476395 MTHFSP49914 203 aa10.68□□□□□ -0.7
VAPB-205ENST00000476395 CFAP74Q9C0B2 1584 aa10.68□□□□□ -0.7
VAPB-205ENST00000476395 ZMYM3Q14202 1370 aa10.68□□□□□ -0.7
VAPB-205ENST00000476395 ANKRD36BQ8N2N9 1353 aa10.68□□□□□ -0.7
VAPB-205ENST00000476395 GOLGA6L3A6NEY3 463 aa10.68□□□□□ -0.7
VAPB-205ENST00000476395 TNNT2P45379 298 aaPredicted RBP10.67□□□□□ -0.7
VAPB-205ENST00000476395 KIF20BQ96Q89 1820 aa10.67□□□□□ -0.7
VAPB-205ENST00000476395 L1TD1Q5T7N2 865 aaKnown RBP10.67□□□□□ -0.7
VAPB-205ENST00000476395 CDC42BPGQ6DT37 1551 aa10.67□□□□□ -0.7
VAPB-205ENST00000476395 PREX1Q8TCU6 1659 aa10.67□□□□□ -0.7
VAPB-205ENST00000476395 WDR63Q8IWG1 891 aa10.67□□□□□ -0.7
VAPB-205ENST00000476395 BCL2L13Q9BXK5 485 aa10.67□□□□□ -0.7
VAPB-205ENST00000476395 TRIM35Q9UPQ4 493 aa10.66□□□□□ -0.7
VAPB-205ENST00000476395 MED14O60244 1454 aa10.66□□□□□ -0.7
VAPB-205ENST00000476395 A0A1W2PP64 1363 aa10.66□□□□□ -0.7
VAPB-205ENST00000476395 ABCC11Q96J66 1382 aa10.66□□□□□ -0.7
VAPB-205ENST00000476395 FSD2A1L4K1 749 aa10.66□□□□□ -0.7
VAPB-205ENST00000476395 NEUROD2Q15784 382 aa10.65□□□□□ -0.7
VAPB-205ENST00000476395 MORC1Q86VD1 984 aa10.65□□□□□ -0.7
VAPB-205ENST00000476395 TBC1D32Q96NH3 1257 aa10.65□□□□□ -0.71
VAPB-205ENST00000476395 PDZRN3Q9UPQ7 1066 aa10.65□□□□□ -0.71
VAPB-205ENST00000476395 CNKSR2Q8WXI2 1034 aa10.64□□□□□ -0.71
VAPB-205ENST00000476395 TBC1D2Q9BYX2 928 aa10.64□□□□□ -0.71
VAPB-205ENST00000476395 ZFYVE9O95405 1425 aa10.63□□□□□ -0.71
VAPB-205ENST00000476395 MAPK8IP3Q9UPT6 1336 aa10.63□□□□□ -0.71
VAPB-205ENST00000476395 ESPNB1AK53 854 aa10.63□□□□□ -0.71
VAPB-205ENST00000476395 PUS7Q96PZ0 661 aaKnown RBP10.63□□□□□ -0.71
VAPB-205ENST00000476395 PRDM4Q9UKN5 801 aa10.63□□□□□ -0.71
VAPB-205ENST00000476395 LRRC7Q96NW7 1537 aa10.63□□□□□ -0.71
VAPB-205ENST00000476395 ARHGAP31Q2M1Z3 1444 aa10.63□□□□□ -0.71
VAPB-205ENST00000476395 KNDC1Q76NI1 1749 aa10.63□□□□□ -0.71
VAPB-205ENST00000476395 NSD2O96028 1365 aa10.63□□□□□ -0.71
VAPB-205ENST00000476395 PNPLA6Q8IY17 1366 aa10.63□□□□□ -0.71
VAPB-205ENST00000476395 NUTM2DQ5VT03 806 aaPredicted RBP10.62□□□□□ -0.71
VAPB-205ENST00000476395 TSR2Q969E8 191 aaKnown RBP10.62□□□□□ -0.71
VAPB-205ENST00000476395 RPGRIP1LQ68CZ1 1315 aa10.62□□□□□ -0.71
VAPB-205ENST00000476395 DLG5Q8TDM6 1919 aa10.62□□□□□ -0.71
VAPB-205ENST00000476395 CABP2Q9NPB3 220 aa10.62□□□□□ -0.71
VAPB-205ENST00000476395 ARHGEF40Q8TER5 1519 aa10.62□□□□□ -0.71
VAPB-205ENST00000476395 MVPQ14764 893 aaKnown RBP10.61□□□□□ -0.71
VAPB-205ENST00000476395 MCM4P33991 863 aa10.61□□□□□ -0.71
VAPB-205ENST00000476395 TRIM27P14373 513 aa10.6□□□□□ -0.71
VAPB-205ENST00000476395 HSP90B1P14625 803 aaKnown RBP10.6□□□□□ -0.71
VAPB-205ENST00000476395 FAM69CQ0P6D2 419 aa10.6□□□□□ -0.71
VAPB-205ENST00000476395 GAS2L3Q86XJ1 694 aa10.6□□□□□ -0.71
VAPB-205ENST00000476395 ZNF692Q9BU19 519 aaPredicted RBP10.6□□□□□ -0.71
VAPB-205ENST00000476395 NEO1Q92859 1461 aa10.6□□□□□ -0.71
VAPB-205ENST00000476395 TRAK2O60296 914 aa10.6□□□□□ -0.71
VAPB-205ENST00000476395 SENP3Q9H4L4 574 aaPredicted RBP10.6□□□□□ -0.71
VAPB-205ENST00000476395 MAP2P11137 1827 aaKnown RBP10.6□□□□□ -0.71
VAPB-205ENST00000476395 NCOA3Q9Y6Q9 1424 aa10.6□□□□□ -0.71
VAPB-205ENST00000476395 ALKQ9UM73 1620 aa10.59□□□□□ -0.71
VAPB-205ENST00000476395 DDIT3P35638 169 aa10.59□□□□□ -0.71
VAPB-205ENST00000476395 NRXN3Q9Y4C0 1643 aa10.59□□□□□ -0.71
VAPB-205ENST00000476395 KIAA1211Q6ZU35 1233 aa10.59□□□□□ -0.71
VAPB-205ENST00000476395 YEATS2Q9ULM3 1422 aa10.59□□□□□ -0.71
VAPB-205ENST00000476395 FYB1O15117 783 aa10.59□□□□□ -0.71
VAPB-205ENST00000476395 SSH1Q8WYL5 1049 aa10.59□□□□□ -0.71
VAPB-205ENST00000476395 MYH16Q9H6N6 1097 aa10.59□□□□□ -0.71
VAPB-205ENST00000476395 GRPEL1Q9HAV7 217 aa10.59□□□□□ -0.71
VAPB-205ENST00000476395 RAPGEF3O95398 923 aa10.58□□□□□ -0.72
VAPB-205ENST00000476395 GGT6Q6P531 493 aa10.58□□□□□ -0.72
VAPB-205ENST00000476395 TMPOP42166 694 aaKnown RBP10.58□□□□□ -0.72
VAPB-205ENST00000476395 EXOSC9Q06265 439 aaKnown RBP10.58□□□□□ -0.72
VAPB-205ENST00000476395 IDI1Q13907 227 aa10.58□□□□□ -0.72
VAPB-205ENST00000476395 PMFBP1Q8TBY8 1022 aa10.58□□□□□ -0.72
VAPB-205ENST00000476395 PRDM10Q9NQV6 1147 aa10.58□□□□□ -0.72
VAPB-205ENST00000476395 BECN1Q14457 450 aa10.57□□□□□ -0.72
VAPB-205ENST00000476395 CHGAP10645 457 aaKnown RBP10.57□□□□□ -0.72
VAPB-205ENST00000476395 HDAC1Q13547 482 aaPredicted RBP10.57□□□□□ -0.72
VAPB-205ENST00000476395 DIP2BQ9P265 1576 aa10.57□□□□□ -0.72
VAPB-205ENST00000476395 FAM135BQ49AJ0 1406 aa10.57□□□□□ -0.72
VAPB-205ENST00000476395 EVC2Q86UK5 1308 aa10.57□□□□□ -0.72
VAPB-205ENST00000476395 RIPK4P57078 832 aa10.56□□□□□ -0.72
VAPB-205ENST00000476395 GGNBP2Q9H3C7 697 aa10.56□□□□□ -0.72
VAPB-205ENST00000476395 ZBTB40Q9NUA8 1239 aa10.56□□□□□ -0.72
VAPB-205ENST00000476395 FAM13BQ9NYF5 915 aa10.56□□□□□ -0.72
VAPB-205ENST00000476395 ZHX1Q9UKY1 873 aaPredicted RBP10.56□□□□□ -0.72
VAPB-205ENST00000476395 PPIP5K1Q6PFW1 1433 aa10.56□□□□□ -0.72
VAPB-205ENST00000476395 YTHDC2Q9H6S0 1430 aaKnown RBP10.56□□□□□ -0.72
VAPB-205ENST00000476395 SMC5Q8IY18 1101 aa10.56□□□□□ -0.72
VAPB-205ENST00000476395 U2AF1L5P0DN76 240 aaPredicted RBP10.55□□□□□ -0.72
VAPB-205ENST00000476395 U2AF1Q01081 240 aaKnown RBP eCLIP10.55□□□□□ -0.72
VAPB-205ENST00000476395 PDCL3Q9H2J4 239 aa10.55□□□□□ -0.72
VAPB-205ENST00000476395 FBLN1P23142 703 aa10.55□□□□□ -0.72
Retrieved 100 of 20,778 RNA–protein pairs in 42.3 ms