RNA–Protein interactions for RNA: ENST00000476045.5

VPS13D-206, Transcript of vacuolar protein sorting 13 homolog D, humanhuman

TSL 5

Gene VPS13D, Length 380 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13D-206ENST00000476045 SCUBE3Q8IX30 993 aa6.94□□□□□ -1.3
VPS13D-206ENST00000476045 FAM217BQ9NTX9 383 aaPredicted RBP6.94□□□□□ -1.3
VPS13D-206ENST00000476045 MYO5CQ9NQX4 1742 aa6.93□□□□□ -1.3
VPS13D-206ENST00000476045 ATP10BO94823 1461 aa6.93□□□□□ -1.3
VPS13D-206ENST00000476045 TTBK1Q5TCY1 1321 aaPredicted RBP6.93□□□□□ -1.3
VPS13D-206ENST00000476045 RICTORQ6R327 1708 aa6.93□□□□□ -1.3
VPS13D-206ENST00000476045 FMN1Q68DA7 1419 aa6.93□□□□□ -1.3
VPS13D-206ENST00000476045 ZMYM4Q5VZL5 1548 aa6.92□□□□□ -1.3
VPS13D-206ENST00000476045 RNF223E7ERA6 249 aa6.92□□□□□ -1.3
VPS13D-206ENST00000476045 ANKLE1Q8NAG6 615 aa6.92□□□□□ -1.3
VPS13D-206ENST00000476045 EMID1Q96A84 441 aaPredicted RBP6.92□□□□□ -1.3
VPS13D-206ENST00000476045 FHOD3Q2V2M9 1422 aa6.92□□□□□ -1.3
VPS13D-206ENST00000476045 FRMPD1Q5SYB0 1578 aa6.91□□□□□ -1.3
VPS13D-206ENST00000476045 KIF14Q15058 1648 aa6.91□□□□□ -1.3
VPS13D-206ENST00000476045 USP46P62068 366 aa6.91□□□□□ -1.3
VPS13D-206ENST00000476045 PUS10Q3MIT2 529 aaKnown RBP6.91□□□□□ -1.3
VPS13D-206ENST00000476045 REPIN1Q9BWE0 567 aaKnown RBP6.91□□□□□ -1.3
VPS13D-206ENST00000476045 SLC27A5Q9Y2P5 690 aa6.91□□□□□ -1.3
VPS13D-206ENST00000476045 COL17A1Q9UMD9 1497 aaPredicted RBP6.91□□□□□ -1.3
VPS13D-206ENST00000476045 TTC37Q6PGP7 1564 aa6.91□□□□□ -1.3
VPS13D-206ENST00000476045 S1PR4O95977 384 aa6.9□□□□□ -1.3
VPS13D-206ENST00000476045 MSS51Q4VC12 460 aa6.9□□□□□ -1.3
VPS13D-206ENST00000476045 BRICD5Q6PL45 260 aa6.9□□□□□ -1.3
VPS13D-206ENST00000476045 IRX2Q9BZI1 471 aaPredicted RBP6.9□□□□□ -1.3
VPS13D-206ENST00000476045 PRKD2Q9BZL6 878 aa6.9□□□□□ -1.3
VPS13D-206ENST00000476045 HOXA2O43364 376 aa6.89□□□□□ -1.31
VPS13D-206ENST00000476045 KDM4AO75164 1064 aa6.89□□□□□ -1.31
VPS13D-206ENST00000476045 SPSB2Q99619 263 aa6.89□□□□□ -1.31
VPS13D-206ENST00000476045 SLC6A16Q9GZN6 736 aa6.89□□□□□ -1.31
VPS13D-206ENST00000476045 BCORL1Q5H9F3 1711 aa6.89□□□□□ -1.31
VPS13D-206ENST00000476045 ADAMTSL3P82987 1691 aa6.88□□□□□ -1.31
VPS13D-206ENST00000476045 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP6.88□□□□□ -1.31
VPS13D-206ENST00000476045 CCDC18Q5T9S5 1454 aa6.88□□□□□ -1.31
VPS13D-206ENST00000476045 GRIPAP1Q4V328 841 aa6.88□□□□□ -1.31
VPS13D-206ENST00000476045 FANCAO15360 1455 aa6.87□□□□□ -1.31
VPS13D-206ENST00000476045 MAGI2Q86UL8 1455 aa6.87□□□□□ -1.31
VPS13D-206ENST00000476045 FMNL1O95466 1100 aaPredicted RBP6.87□□□□□ -1.31
VPS13D-206ENST00000476045 LAPTM4AQ15012 233 aa6.87□□□□□ -1.31
VPS13D-206ENST00000476045 FAM160A2Q8N612 972 aaPredicted RBP6.87□□□□□ -1.31
VPS13D-206ENST00000476045 PREX2Q70Z35 1606 aa6.87□□□□□ -1.31
VPS13D-206ENST00000476045 PCF11O94913 1555 aaKnown RBP6.86□□□□□ -1.31
VPS13D-206ENST00000476045 HECW2Q9P2P5 1572 aa6.86□□□□□ -1.31
VPS13D-206ENST00000476045 CDK13Q14004 1512 aaKnown RBP6.86□□□□□ -1.31
VPS13D-206ENST00000476045 ZFYVE16Q7Z3T8 1539 aa6.86□□□□□ -1.31
VPS13D-206ENST00000476045 FYCO1Q9BQS8 1478 aa6.86□□□□□ -1.31
VPS13D-206ENST00000476045 ARHGAP35Q9NRY4 1499 aa6.86□□□□□ -1.31
VPS13D-206ENST00000476045 CLIP1P30622 1438 aa6.86□□□□□ -1.31
VPS13D-206ENST00000476045 Q3C1V9 767 aa6.86□□□□□ -1.31
VPS13D-206ENST00000476045 PLA2G2CQ5R387 149 aa6.86□□□□□ -1.31
VPS13D-206ENST00000476045 RNF19BQ6ZMZ0 732 aa6.86□□□□□ -1.31
VPS13D-206ENST00000476045 PARP9Q8IXQ6 854 aa6.86□□□□□ -1.31
VPS13D-206ENST00000476045 LRRIQ1Q96JM4 1722 aa6.86□□□□□ -1.31
VPS13D-206ENST00000476045 DENND4BO75064 1496 aaPredicted RBP6.85□□□□□ -1.31
VPS13D-206ENST00000476045 FER1L4A9Z1Z3 1794 aa6.85□□□□□ -1.31
VPS13D-206ENST00000476045 TRIM66O15016 1216 aa6.85□□□□□ -1.31
VPS13D-206ENST00000476045 MMP16P51512 607 aa6.85□□□□□ -1.31
VPS13D-206ENST00000476045 GIGYF2Q6Y7W6 1299 aaKnown RBP6.85□□□□□ -1.31
VPS13D-206ENST00000476045 AK7Q96M32 723 aa6.85□□□□□ -1.31
VPS13D-206ENST00000476045 POGZQ7Z3K3 1410 aa6.84□□□□□ -1.31
VPS13D-206ENST00000476045 MADDQ8WXG6 1647 aa6.84□□□□□ -1.31
VPS13D-206ENST00000476045 KDM5CP41229 1560 aa6.84□□□□□ -1.31
VPS13D-206ENST00000476045 REREQ9P2R6 1566 aa6.84□□□□□ -1.31
VPS13D-206ENST00000476045 NRG2O14511 850 aaPredicted RBP6.84□□□□□ -1.31
VPS13D-206ENST00000476045 SPRYD7Q5W111 196 aa6.84□□□□□ -1.31
VPS13D-206ENST00000476045 TRIM67Q6ZTA4 783 aa6.84□□□□□ -1.31
VPS13D-206ENST00000476045 KRI1Q8N9T8 703 aaKnown RBP6.84□□□□□ -1.31
VPS13D-206ENST00000476045 TROQ12816 1431 aaPredicted RBP6.84□□□□□ -1.32
VPS13D-206ENST00000476045 AKNAQ7Z591 1439 aa6.84□□□□□ -1.32
VPS13D-206ENST00000476045 DXOO77932 396 aaKnown RBP6.83□□□□□ -1.32
VPS13D-206ENST00000476045 SSTR3P32745 418 aaPredicted RBP6.83□□□□□ -1.32
VPS13D-206ENST00000476045 SLC19A1P41440 591 aa6.83□□□□□ -1.32
VPS13D-206ENST00000476045 PRR20EP86478 221 aa6.83□□□□□ -1.32
VPS13D-206ENST00000476045 PRR20CP86479 221 aa6.83□□□□□ -1.32
VPS13D-206ENST00000476045 PRR20DP86480 221 aa6.83□□□□□ -1.32
VPS13D-206ENST00000476045 PRR20BP86481 221 aa6.83□□□□□ -1.32
VPS13D-206ENST00000476045 PRR20AP86496 221 aa6.83□□□□□ -1.32
VPS13D-206ENST00000476045 LIAT1Q6ZQX7 453 aa6.83□□□□□ -1.32
VPS13D-206ENST00000476045 HLA-CQ95604 372 aa6.83□□□□□ -1.32
VPS13D-206ENST00000476045 PRDM9Q9NQV7 894 aa6.83□□□□□ -1.32
VPS13D-206ENST00000476045 ZNF518AQ6AHZ1 1483 aa6.83□□□□□ -1.32
VPS13D-206ENST00000476045 ITSN2Q9NZM3 1697 aa6.83□□□□□ -1.32
VPS13D-206ENST00000476045 RIMS1Q86UR5 1692 aaKnown RBP6.82□□□□□ -1.32
VPS13D-206ENST00000476045 PLEKHD1A6NEE1 506 aa6.82□□□□□ -1.32
VPS13D-206ENST00000476045 PPEF1O14829 653 aaPredicted RBP6.82□□□□□ -1.32
VPS13D-206ENST00000476045 GJA5P36382 358 aa6.82□□□□□ -1.32
VPS13D-206ENST00000476045 RPIAP49247 311 aa6.82□□□□□ -1.32
VPS13D-206ENST00000476045 ZNF598Q86UK7 904 aaKnown RBP6.82□□□□□ -1.32
VPS13D-206ENST00000476045 CDK11AQ9UQ88 783 aaPredicted RBP6.82□□□□□ -1.32
VPS13D-206ENST00000476045 CASKIN1Q8WXD9 1431 aa6.82□□□□□ -1.32
VPS13D-206ENST00000476045 CDC42BPAQ5VT25 1732 aa6.81□□□□□ -1.32
VPS13D-206ENST00000476045 CDC42BPBQ9Y5S2 1711 aa6.81□□□□□ -1.32
VPS13D-206ENST00000476045 ABCC1P33527 1531 aa6.81□□□□□ -1.32
VPS13D-206ENST00000476045 ARHGAP5Q13017 1502 aa6.81□□□□□ -1.32
VPS13D-206ENST00000476045 LCE2BO14633 110 aa6.81□□□□□ -1.32
VPS13D-206ENST00000476045 TTLL12Q14166 644 aaPredicted RBP6.81□□□□□ -1.32
VPS13D-206ENST00000476045 SPIRE2Q8WWL2 714 aa6.81□□□□□ -1.32
VPS13D-206ENST00000476045 BCANQ96GW7 911 aa6.81□□□□□ -1.32
VPS13D-206ENST00000476045 USB1Q9BQ65 265 aaKnown RBP6.81□□□□□ -1.32
VPS13D-206ENST00000476045 PLCH2O75038 1416 aa6.81□□□□□ -1.32
VPS13D-206ENST00000476045 PTPRMP28827 1452 aa6.8□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 20.7 ms