RNA–Protein interactions for RNA: ENST00000475482.5

CPSF3-203, Transcript of cleavage and polyadenylation specific factor 3, humanhuman

TSL 4

Gene CPSF3, Length 871 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF3-203ENST00000475482 UNC5CLQ8IV45 518 aa22.26■■□□□ 1.15
CPSF3-203ENST00000475482 ROCK2O75116 1388 aaKnown RBP22.25■■□□□ 1.15
CPSF3-203ENST00000475482 UPF1Q92900 1129 aaKnown RBP eCLIP22.25■■□□□ 1.15
CPSF3-203ENST00000475482 PLCH1Q4KWH8 1693 aa22.24■■□□□ 1.15
CPSF3-203ENST00000475482 ACEP12821 1306 aa22.24■■□□□ 1.15
CPSF3-203ENST00000475482 GJD4Q96KN9 370 aaPredicted RBP22.23■■□□□ 1.15
CPSF3-203ENST00000475482 TIMELESSQ9UNS1 1208 aa22.23■■□□□ 1.15
CPSF3-203ENST00000475482 GLI3P10071 1580 aa22.21■■□□□ 1.15
CPSF3-203ENST00000475482 FAM83GA6ND36 823 aa22.21■■□□□ 1.15
CPSF3-203ENST00000475482 HAP1P54257 671 aaPredicted RBP22.21■■□□□ 1.15
CPSF3-203ENST00000475482 CABP2Q9NPB3 220 aa22.21■■□□□ 1.15
CPSF3-203ENST00000475482 SRPK2P78362 688 aaKnown RBP22.2■■□□□ 1.14
CPSF3-203ENST00000475482 PPIP5K1Q6PFW1 1433 aa22.2■■□□□ 1.14
CPSF3-203ENST00000475482 TONSLQ96HA7 1378 aa22.19■■□□□ 1.14
CPSF3-203ENST00000475482 RALGAPBQ86X10 1494 aa22.19■■□□□ 1.14
CPSF3-203ENST00000475482 COL14A1Q05707 1796 aaKnown RBP22.18■■□□□ 1.14
CPSF3-203ENST00000475482 NRAPQ86VF7 1730 aa22.18■■□□□ 1.14
CPSF3-203ENST00000475482 PAK3O75914 559 aaPredicted RBP22.18■■□□□ 1.14
CPSF3-203ENST00000475482 SBNO2Q9Y2G9 1366 aa22.17■■□□□ 1.14
CPSF3-203ENST00000475482 EVC2Q86UK5 1308 aa22.17■■□□□ 1.14
CPSF3-203ENST00000475482 VPS72Q15906 364 aa22.17■■□□□ 1.14
CPSF3-203ENST00000475482 PHRF1Q9P1Y6 1649 aaKnown RBP22.17■■□□□ 1.14
CPSF3-203ENST00000475482 BRD4O60885 1362 aaPredicted RBP22.16■■□□□ 1.14
CPSF3-203ENST00000475482 PLEKHG5O94827 1062 aa22.16■■□□□ 1.14
CPSF3-203ENST00000475482 ONECUT3O60422 494 aaPredicted RBP22.14■■□□□ 1.13
CPSF3-203ENST00000475482 CABP1Q9NZU7 370 aa22.14■■□□□ 1.13
CPSF3-203ENST00000475482 SSH2Q76I76 1423 aa22.13■■□□□ 1.13
CPSF3-203ENST00000475482 CARD11Q9BXL7 1154 aa22.12■■□□□ 1.13
CPSF3-203ENST00000475482 USP6P35125 1406 aa22.12■■□□□ 1.13
CPSF3-203ENST00000475482 ATAD2Q6PL18 1390 aa22.12■■□□□ 1.13
CPSF3-203ENST00000475482 USP19O94966 1318 aa22.11■■□□□ 1.13
CPSF3-203ENST00000475482 EP400Q96L91 3159 aa22.11■■□□□ 1.13
CPSF3-203ENST00000475482 BTG4Q9NY30 223 aa22.1■■□□□ 1.13
CPSF3-203ENST00000475482 BRWD3Q6RI45 1802 aa22.1■■□□□ 1.13
CPSF3-203ENST00000475482 NRKQ7Z2Y5 1582 aa22.09■■□□□ 1.13
CPSF3-203ENST00000475482 ABTB2Q8N961 1025 aa22.09■■□□□ 1.13
CPSF3-203ENST00000475482 AKAP12Q02952 1782 aa22.09■■□□□ 1.13
CPSF3-203ENST00000475482 KIAA0232Q92628 1395 aa22.09■■□□□ 1.13
CPSF3-203ENST00000475482 NUTM2GQ5VZR2 741 aa22.08■■□□□ 1.13
CPSF3-203ENST00000475482 PRDM11Q9NQV5 511 aa22.07■■□□□ 1.12
CPSF3-203ENST00000475482 CPSF1Q10570 1443 aaKnown RBP22.06■■□□□ 1.12
CPSF3-203ENST00000475482 NLRP13Q86W25 1043 aa22.06■■□□□ 1.12
CPSF3-203ENST00000475482 CPDO75976 1380 aa22.06■■□□□ 1.12
CPSF3-203ENST00000475482 ZNF692Q9BU19 519 aaPredicted RBP22.05■■□□□ 1.12
CPSF3-203ENST00000475482 SEPT12Q8IYM1 358 aa22.04■■□□□ 1.12
CPSF3-203ENST00000475482 PIK3C2AO00443 1686 aa22.04■■□□□ 1.12
CPSF3-203ENST00000475482 LMO7Q8WWI1 1683 aa22.04■■□□□ 1.12
CPSF3-203ENST00000475482 SPATA31A5Q5VU36 1347 aa22.04■■□□□ 1.12
CPSF3-203ENST00000475482 SPATA31A7Q8IWB4 1347 aa22.04■■□□□ 1.12
CPSF3-203ENST00000475482 ZC3H6P61129 1189 aaKnown RBP22.03■■□□□ 1.12
CPSF3-203ENST00000475482 SLIT3O75094 1523 aa22.02■■□□□ 1.12
CPSF3-203ENST00000475482 GCP02774 474 aa22.02■■□□□ 1.12
CPSF3-203ENST00000475482 CHRNA2Q15822 529 aa22.02■■□□□ 1.12
CPSF3-203ENST00000475482 CCDC9Q9Y3X0 531 aaKnown RBP22.02■■□□□ 1.12
CPSF3-203ENST00000475482 PUS7Q96PZ0 661 aaKnown RBP22.01■■□□□ 1.11
CPSF3-203ENST00000475482 CAMTA1Q9Y6Y1 1673 aa22.01■■□□□ 1.11
CPSF3-203ENST00000475482 MON2Q7Z3U7 1717 aa22■■□□□ 1.11
CPSF3-203ENST00000475482 CCDC125Q86Z20 511 aa22■■□□□ 1.11
CPSF3-203ENST00000475482 TESK2Q96S53 571 aa22■■□□□ 1.11
CPSF3-203ENST00000475482 TTC21BQ7Z4L5 1316 aa22■■□□□ 1.11
CPSF3-203ENST00000475482 THSD7AQ9UPZ6 1657 aa21.99■■□□□ 1.11
CPSF3-203ENST00000475482 CD163L1Q9NR16 1453 aa21.99■■□□□ 1.11
CPSF3-203ENST00000475482 NLRP6P59044 892 aa21.98■■□□□ 1.11
CPSF3-203ENST00000475482 SPATA31A1Q5TZJ5 1347 aa21.98■■□□□ 1.11
CPSF3-203ENST00000475482 FAM98CQ17RN3 349 aaKnown RBP21.97■■□□□ 1.11
CPSF3-203ENST00000475482 TTC21AQ8NDW8 1320 aa21.97■■□□□ 1.11
CPSF3-203ENST00000475482 COL18A1P39060 1754 aa21.95■■□□□ 1.1
CPSF3-203ENST00000475482 ST20-MTHFSA0A0A6YYL1 179 aa21.95■■□□□ 1.1
CPSF3-203ENST00000475482 KRT27Q7Z3Y8 459 aa21.95■■□□□ 1.1
CPSF3-203ENST00000475482 KTN1Q86UP2 1357 aaKnown RBP21.95■■□□□ 1.1
CPSF3-203ENST00000475482 USP54Q70EL1 1684 aa21.94■■□□□ 1.1
CPSF3-203ENST00000475482 SLC24A1O60721 1099 aa21.93■■□□□ 1.1
CPSF3-203ENST00000475482 BLMP54132 1417 aaPredicted RBP21.93■■□□□ 1.1
CPSF3-203ENST00000475482 AATKQ6ZMQ8 1374 aa21.93■■□□□ 1.1
CPSF3-203ENST00000475482 COL5A2P05997 1499 aaPredicted RBP21.92■■□□□ 1.1
CPSF3-203ENST00000475482 SLC12A5Q9H2X9 1139 aa21.92■■□□□ 1.1
CPSF3-203ENST00000475482 STRN4Q9NRL3 753 aa21.92■■□□□ 1.1
CPSF3-203ENST00000475482 USP31Q70CQ4 1352 aa21.91■■□□□ 1.1
CPSF3-203ENST00000475482 BARGINQ6ZT62 677 aa21.91■■□□□ 1.1
CPSF3-203ENST00000475482 LARP1Q6PKG0 1096 aaKnown RBP21.9■■□□□ 1.1
CPSF3-203ENST00000475482 NFAT5O94916 1531 aa21.9■■□□□ 1.1
CPSF3-203ENST00000475482 EVA1CP58658 441 aa21.89■■□□□ 1.09
CPSF3-203ENST00000475482 ARHGEF25Q86VW2 580 aa21.89■■□□□ 1.09
CPSF3-203ENST00000475482 KCNH5Q8NCM2 988 aa21.89■■□□□ 1.09
CPSF3-203ENST00000475482 USP47Q96K76 1375 aa21.88■■□□□ 1.09
CPSF3-203ENST00000475482 NINLQ9Y2I6 1382 aa21.88■■□□□ 1.09
CPSF3-203ENST00000475482 TMC1Q8TDI8 760 aa21.87■■□□□ 1.09
CPSF3-203ENST00000475482 EDC4Q6P2E9 1401 aaKnown RBP21.87■■□□□ 1.09
CPSF3-203ENST00000475482 A0A1W2PP64 1363 aa21.87■■□□□ 1.09
CPSF3-203ENST00000475482 A0A0G2JS52 829 aa21.86■■□□□ 1.09
CPSF3-203ENST00000475482 MYT1Q01538 1121 aa21.86■■□□□ 1.09
CPSF3-203ENST00000475482 HDGFL2Q7Z4V5 671 aaPredicted RBP21.86■■□□□ 1.09
CPSF3-203ENST00000475482 TCP11L2Q8N4U5 519 aa21.86■■□□□ 1.09
CPSF3-203ENST00000475482 THRAP3Q9Y2W1 955 aaKnown RBP21.86■■□□□ 1.09
CPSF3-203ENST00000475482 TERF2IPQ9NYB0 399 aa21.85■■□□□ 1.09
CPSF3-203ENST00000475482 AXIN2Q9Y2T1 843 aa21.85■■□□□ 1.09
CPSF3-203ENST00000475482 ABCC6O95255 1503 aa21.85■■□□□ 1.09
CPSF3-203ENST00000475482 RGPD5Q99666 1765 aa21.84■■□□□ 1.09
CPSF3-203ENST00000475482 CRB1P82279 1406 aa21.84■■□□□ 1.09
CPSF3-203ENST00000475482 ZRANB1Q9UGI0 708 aa21.84■■□□□ 1.09
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms