RNA–Protein interactions for RNA: ENST00000474962.1

CLIP2-204, Transcript of CAP-Gly domain containing linker protein 2, humanhuman

TSL 3

Gene CLIP2, Length 690 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP2-204ENST00000474962 BTG4Q9NY30 223 aa16.98■□□□□ 0.31
CLIP2-204ENST00000474962 ARHGEF28Q8N1W1 1705 aaKnown RBP16.98■□□□□ 0.31
CLIP2-204ENST00000474962 PLEKHG3A1L390 1219 aa16.97■□□□□ 0.31
CLIP2-204ENST00000474962 ONECUT3O60422 494 aaPredicted RBP16.97■□□□□ 0.31
CLIP2-204ENST00000474962 CABP2Q9NPB3 220 aa16.97■□□□□ 0.31
CLIP2-204ENST00000474962 SRPK2P78362 688 aaKnown RBP16.96■□□□□ 0.31
CLIP2-204ENST00000474962 ATP7BP35670 1465 aa16.96■□□□□ 0.31
CLIP2-204ENST00000474962 TRPM3Q9HCF6 1732 aaPredicted RBP16.96■□□□□ 0.3
CLIP2-204ENST00000474962 CENPJQ9HC77 1338 aaPredicted RBP16.96■□□□□ 0.3
CLIP2-204ENST00000474962 GLI3P10071 1580 aa16.94■□□□□ 0.3
CLIP2-204ENST00000474962 KIAA1210Q9ULL0 1709 aa16.93■□□□□ 0.3
CLIP2-204ENST00000474962 ZC3H6P61129 1189 aaKnown RBP16.93■□□□□ 0.3
CLIP2-204ENST00000474962 CHRNA2Q15822 529 aa16.93■□□□□ 0.3
CLIP2-204ENST00000474962 PRDM11Q9NQV5 511 aa16.93■□□□□ 0.3
CLIP2-204ENST00000474962 POLR3AO14802 1390 aaPredicted RBP16.92■□□□□ 0.3
CLIP2-204ENST00000474962 ALS2Q96Q42 1657 aa16.92■□□□□ 0.3
CLIP2-204ENST00000474962 FAM98CQ17RN3 349 aaKnown RBP16.92■□□□□ 0.3
CLIP2-204ENST00000474962 CCDC125Q86Z20 511 aa16.92■□□□□ 0.3
CLIP2-204ENST00000474962 ABTB2Q8N961 1025 aa16.92■□□□□ 0.3
CLIP2-204ENST00000474962 CABP1Q9NZU7 370 aa16.92■□□□□ 0.3
CLIP2-204ENST00000474962 TNKS1BP1Q9C0C2 1729 aaKnown RBP16.92■□□□□ 0.3
CLIP2-204ENST00000474962 CLSPNQ9HAW4 1339 aa16.92■□□□□ 0.3
CLIP2-204ENST00000474962 A0A0G2JS52 829 aa16.9■□□□□ 0.3
CLIP2-204ENST00000474962 MYT1Q01538 1121 aa16.9■□□□□ 0.3
CLIP2-204ENST00000474962 KRT27Q7Z3Y8 459 aa16.9■□□□□ 0.3
CLIP2-204ENST00000474962 ABCA3Q99758 1704 aa16.9■□□□□ 0.3
CLIP2-204ENST00000474962 KIAA0232Q92628 1395 aa16.89■□□□□ 0.3
CLIP2-204ENST00000474962 PLCH1Q4KWH8 1693 aa16.88■□□□□ 0.29
CLIP2-204ENST00000474962 SPATA31A5Q5VU36 1347 aa16.88■□□□□ 0.29
CLIP2-204ENST00000474962 SPATA31A7Q8IWB4 1347 aa16.88■□□□□ 0.29
CLIP2-204ENST00000474962 PPIP5K1Q6PFW1 1433 aa16.87■□□□□ 0.29
CLIP2-204ENST00000474962 NWD2Q9ULI1 1742 aa16.87■□□□□ 0.29
CLIP2-204ENST00000474962 DEFB132Q7Z7B7 95 aa16.87■□□□□ 0.29
CLIP2-204ENST00000474962 STRN4Q9NRL3 753 aa16.87■□□□□ 0.29
CLIP2-204ENST00000474962 TONSLQ96HA7 1378 aa16.87■□□□□ 0.29
CLIP2-204ENST00000474962 FAM182BQ5T319 152 aa16.86■□□□□ 0.29
CLIP2-204ENST00000474962 ROCK2O75116 1388 aaKnown RBP16.86■□□□□ 0.29
CLIP2-204ENST00000474962 ITSN1Q15811 1721 aa16.85■□□□□ 0.29
CLIP2-204ENST00000474962 BRWD3Q6RI45 1802 aa16.85■□□□□ 0.29
CLIP2-204ENST00000474962 EVA1CP58658 441 aa16.85■□□□□ 0.29
CLIP2-204ENST00000474962 EVC2Q86UK5 1308 aa16.85■□□□□ 0.29
CLIP2-204ENST00000474962 GCP02774 474 aa16.84■□□□□ 0.29
CLIP2-204ENST00000474962 NLRP13Q86W25 1043 aa16.84■□□□□ 0.29
CLIP2-204ENST00000474962 COL14A1Q05707 1796 aaKnown RBP16.84■□□□□ 0.29
CLIP2-204ENST00000474962 SPATA31A1Q5TZJ5 1347 aa16.83■□□□□ 0.28
CLIP2-204ENST00000474962 USP35Q9P2H5 1018 aa16.83■□□□□ 0.28
CLIP2-204ENST00000474962 ZRANB1Q9UGI0 708 aa16.83■□□□□ 0.28
CLIP2-204ENST00000474962 TOPAZ1Q8N9V7 1692 aa16.82■□□□□ 0.28
CLIP2-204ENST00000474962 BLMP54132 1417 aaPredicted RBP16.82■□□□□ 0.28
CLIP2-204ENST00000474962 NLRP6P59044 892 aa16.82■□□□□ 0.28
CLIP2-204ENST00000474962 SF3B2Q13435 895 aaKnown RBP16.82■□□□□ 0.28
CLIP2-204ENST00000474962 CRYBG1Q9Y4K1 1723 aa16.82■□□□□ 0.28
CLIP2-204ENST00000474962 LARP1Q6PKG0 1096 aaKnown RBP16.81■□□□□ 0.28
CLIP2-204ENST00000474962 NRAPQ86VF7 1730 aa16.81■□□□□ 0.28
CLIP2-204ENST00000474962 USP19O94966 1318 aa16.8■□□□□ 0.28
CLIP2-204ENST00000474962 QRICH2Q9H0J4 1663 aa16.8■□□□□ 0.28
CLIP2-204ENST00000474962 TRPM1Q7Z4N2 1603 aa16.8■□□□□ 0.28
CLIP2-204ENST00000474962 ZBTB7CA1YPR0 619 aa16.79■□□□□ 0.28
CLIP2-204ENST00000474962 CARD11Q9BXL7 1154 aa16.79■□□□□ 0.28
CLIP2-204ENST00000474962 ZNF692Q9BU19 519 aaPredicted RBP16.78■□□□□ 0.28
CLIP2-204ENST00000474962 TIMELESSQ9UNS1 1208 aa16.78■□□□□ 0.28
CLIP2-204ENST00000474962 USP6P35125 1406 aa16.78■□□□□ 0.28
CLIP2-204ENST00000474962 CPDO75976 1380 aa16.77■□□□□ 0.28
CLIP2-204ENST00000474962 KCNA4P22459 653 aa16.77■□□□□ 0.28
CLIP2-204ENST00000474962 CAMTA1Q9Y6Y1 1673 aa16.77■□□□□ 0.28
CLIP2-204ENST00000474962 PPP4R3CPQ6ZMV5 832 aa16.76■□□□□ 0.27
CLIP2-204ENST00000474962 PHRF1Q9P1Y6 1649 aaKnown RBP16.76■□□□□ 0.27
CLIP2-204ENST00000474962 SSH2Q76I76 1423 aa16.76■□□□□ 0.27
CLIP2-204ENST00000474962 BRD4O60885 1362 aaPredicted RBP16.76■□□□□ 0.27
CLIP2-204ENST00000474962 TTC21BQ7Z4L5 1316 aa16.75■□□□□ 0.27
CLIP2-204ENST00000474962 BARGINQ6ZT62 677 aa16.75■□□□□ 0.27
CLIP2-204ENST00000474962 EN1Q05925 392 aaPredicted RBP16.74■□□□□ 0.27
CLIP2-204ENST00000474962 TCP11L2Q8N4U5 519 aa16.74■□□□□ 0.27
CLIP2-204ENST00000474962 AXIN2Q9Y2T1 843 aa16.74■□□□□ 0.27
CLIP2-204ENST00000474962 SOX12O15370 315 aa16.73■□□□□ 0.27
CLIP2-204ENST00000474962 MSH5O43196 834 aa16.73■□□□□ 0.27
CLIP2-204ENST00000474962 BAG6P46379 1132 aa16.73■□□□□ 0.27
CLIP2-204ENST00000474962 NRKQ7Z2Y5 1582 aa16.72■□□□□ 0.27
CLIP2-204ENST00000474962 TRIM37O94972 964 aa16.72■□□□□ 0.27
CLIP2-204ENST00000474962 PDE3BQ13370 1112 aa16.72■□□□□ 0.27
CLIP2-204ENST00000474962 FAM196AQ6ZSG2 479 aa16.72■□□□□ 0.27
CLIP2-204ENST00000474962 TMC1Q8TDI8 760 aa16.72■□□□□ 0.27
CLIP2-204ENST00000474962 SLC12A5Q9H2X9 1139 aa16.72■□□□□ 0.27
CLIP2-204ENST00000474962 SUGP2Q8IX01 1082 aaKnown RBP eCLIP16.71■□□□□ 0.27
CLIP2-204ENST00000474962 CPSF1Q10570 1443 aaKnown RBP16.7■□□□□ 0.26
CLIP2-204ENST00000474962 AATKQ6ZMQ8 1374 aa16.7■□□□□ 0.26
CLIP2-204ENST00000474962 KTN1Q86UP2 1357 aaKnown RBP16.7■□□□□ 0.26
CLIP2-204ENST00000474962 ARHGEF25Q86VW2 580 aa16.7■□□□□ 0.26
CLIP2-204ENST00000474962 THRAP3Q9Y2W1 955 aaKnown RBP16.7■□□□□ 0.26
CLIP2-204ENST00000474962 THSD7AQ9UPZ6 1657 aa16.69■□□□□ 0.26
CLIP2-204ENST00000474962 TTC21AQ8NDW8 1320 aa16.69■□□□□ 0.26
CLIP2-204ENST00000474962 ST20-MTHFSA0A0A6YYL1 179 aa16.68■□□□□ 0.26
CLIP2-204ENST00000474962 PSDA5PKW4 1024 aaPredicted RBP16.68■□□□□ 0.26
CLIP2-204ENST00000474962 TOM1L2Q6ZVM7 507 aa16.68■□□□□ 0.26
CLIP2-204ENST00000474962 KCNH5Q8NCM2 988 aa16.68■□□□□ 0.26
CLIP2-204ENST00000474962 LMO7Q8WWI1 1683 aa16.68■□□□□ 0.26
CLIP2-204ENST00000474962 COL5A2P05997 1499 aaPredicted RBP16.67■□□□□ 0.26
CLIP2-204ENST00000474962 SBNO2Q9Y2G9 1366 aa16.67■□□□□ 0.26
CLIP2-204ENST00000474962 APBA3O96018 575 aa16.67■□□□□ 0.26
CLIP2-204ENST00000474962 EZH2Q15910 746 aaKnown RBP16.67■□□□□ 0.26
Retrieved 100 of 20,778 RNA–protein pairs in 26.8 ms