RNA–Protein interactions for RNA: ENST00000474455.1

SMIM11A-204, Transcript of small integral membrane protein 11A, humanhuman

TSL 1 (best)

Gene SMIM11A, Length 1,857 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMIM11A-204ENST00000474455 POLR3AO14802 1390 aaPredicted RBP27.93■■■□□ 2.06
SMIM11A-204ENST00000474455 DCCP43146 1447 aa27.93■■■□□ 2.06
SMIM11A-204ENST00000474455 FYB1O15117 783 aa27.92■■■□□ 2.06
SMIM11A-204ENST00000474455 ZNF692Q9BU19 519 aaPredicted RBP27.92■■■□□ 2.06
SMIM11A-204ENST00000474455 CADPS2Q86UW7 1296 aa27.91■■■□□ 2.06
SMIM11A-204ENST00000474455 NPC1L1Q9UHC9 1359 aa27.91■■■□□ 2.06
SMIM11A-204ENST00000474455 NRKQ7Z2Y5 1582 aa27.9■■■□□ 2.06
SMIM11A-204ENST00000474455 USP6P35125 1406 aa27.9■■■□□ 2.06
SMIM11A-204ENST00000474455 RALBP1Q15311 655 aa27.9■■■□□ 2.06
SMIM11A-204ENST00000474455 ZRANB1Q9UGI0 708 aa27.9■■■□□ 2.06
SMIM11A-204ENST00000474455 EDC4Q6P2E9 1401 aaKnown RBP27.9■■■□□ 2.06
SMIM11A-204ENST00000474455 HNRNPUQ00839 825 aaKnown RBP eCLIP27.89■■■□□ 2.05
SMIM11A-204ENST00000474455 NME9Q86XW9 330 aa27.88■■■□□ 2.05
SMIM11A-204ENST00000474455 TNNT2P45379 298 aaPredicted RBP27.87■■■□□ 2.05
SMIM11A-204ENST00000474455 FOXO3O43524 673 aa27.87■■■□□ 2.05
SMIM11A-204ENST00000474455 TTC21BQ7Z4L5 1316 aa27.86■■■□□ 2.05
SMIM11A-204ENST00000474455 DDX17Q92841 729 aaKnown RBP27.86■■■□□ 2.05
SMIM11A-204ENST00000474455 ANKRD26Q9UPS8 1709 aa27.86■■■□□ 2.05
SMIM11A-204ENST00000474455 SSH2Q76I76 1423 aa27.85■■■□□ 2.05
SMIM11A-204ENST00000474455 XPCQ01831 940 aaPredicted RBP27.85■■■□□ 2.05
SMIM11A-204ENST00000474455 MYBBP1AQ9BQG0 1328 aaKnown RBP27.85■■■□□ 2.05
SMIM11A-204ENST00000474455 MORC1Q86VD1 984 aa27.84■■■□□ 2.05
SMIM11A-204ENST00000474455 PPP2R1AP30153 589 aa27.82■■■□□ 2.04
SMIM11A-204ENST00000474455 SLAIN2Q9P270 581 aa27.82■■■□□ 2.04
SMIM11A-204ENST00000474455 FBLN1P23142 703 aa27.81■■■□□ 2.04
SMIM11A-204ENST00000474455 PSME1Q06323 249 aa27.81■■■□□ 2.04
SMIM11A-204ENST00000474455 KIF1AQ12756 1690 aa27.8■■■□□ 2.04
SMIM11A-204ENST00000474455 NSD2O96028 1365 aa27.79■■■□□ 2.04
SMIM11A-204ENST00000474455 PAK3O75914 559 aaPredicted RBP27.78■■■□□ 2.04
SMIM11A-204ENST00000474455 PIK3C2AO00443 1686 aa27.78■■■□□ 2.04
SMIM11A-204ENST00000474455 BRINP3Q76B58 766 aa27.78■■■□□ 2.04
SMIM11A-204ENST00000474455 MRS2Q9HD23 443 aa27.78■■■□□ 2.04
SMIM11A-204ENST00000474455 FANCIQ9NVI1 1328 aa27.78■■■□□ 2.04
SMIM11A-204ENST00000474455 NUTM2GQ5VZR2 741 aa27.76■■■□□ 2.04
SMIM11A-204ENST00000474455 MAP2P11137 1827 aaKnown RBP27.76■■■□□ 2.03
SMIM11A-204ENST00000474455 NLRP13Q86W25 1043 aa27.74■■■□□ 2.03
SMIM11A-204ENST00000474455 KRT28Q7Z3Y7 464 aa27.74■■■□□ 2.03
SMIM11A-204ENST00000474455 TRPM3Q9HCF6 1732 aaPredicted RBP27.73■■■□□ 2.03
SMIM11A-204ENST00000474455 MARF1Q9Y4F3 1742 aaKnown RBP27.73■■■□□ 2.03
SMIM11A-204ENST00000474455 TTC21AQ8NDW8 1320 aa27.72■■■□□ 2.03
SMIM11A-204ENST00000474455 COG3Q96JB2 828 aa27.72■■■□□ 2.03
SMIM11A-204ENST00000474455 ABTB2Q8N961 1025 aa27.71■■■□□ 2.03
SMIM11A-204ENST00000474455 PPP4R2Q9NY27 417 aa27.71■■■□□ 2.03
SMIM11A-204ENST00000474455 BRD4O60885 1362 aaPredicted RBP27.7■■■□□ 2.02
SMIM11A-204ENST00000474455 OVOS2A0A0J9YW53 1432 aa27.7■■■□□ 2.02
SMIM11A-204ENST00000474455 OVOS2Q6IE36 1432 aa27.7■■■□□ 2.02
SMIM11A-204ENST00000474455 NLRP6P59044 892 aa27.68■■■□□ 2.02
SMIM11A-204ENST00000474455 ZBED9Q6R2W3 1325 aa27.67■■■□□ 2.02
SMIM11A-204ENST00000474455 SOX12O15370 315 aa27.67■■■□□ 2.02
SMIM11A-204ENST00000474455 MTHFSP49914 203 aa27.67■■■□□ 2.02
SMIM11A-204ENST00000474455 FAM9BQ8IZU0 186 aa27.67■■■□□ 2.02
SMIM11A-204ENST00000474455 PLEKHG5O94827 1062 aa27.66■■■□□ 2.02
SMIM11A-204ENST00000474455 LMOD2Q6P5Q4 547 aa27.65■■■□□ 2.02
SMIM11A-204ENST00000474455 NPHP3Q7Z494 1330 aa27.65■■■□□ 2.02
SMIM11A-204ENST00000474455 ROBO1Q9Y6N7 1651 aa27.65■■■□□ 2.02
SMIM11A-204ENST00000474455 PXDNQ92626 1479 aa27.64■■■□□ 2.02
SMIM11A-204ENST00000474455 USP31Q70CQ4 1352 aa27.64■■■□□ 2.01
SMIM11A-204ENST00000474455 ALS2Q96Q42 1657 aa27.64■■■□□ 2.01
SMIM11A-204ENST00000474455 RRS1Q15050 365 aaKnown RBP27.64■■■□□ 2.01
SMIM11A-204ENST00000474455 PNISRQ8TF01 805 aaKnown RBP27.63■■■□□ 2.01
SMIM11A-204ENST00000474455 POLKQ9UBT6 870 aa27.61■■■□□ 2.01
SMIM11A-204ENST00000474455 EMILIN1Q9Y6C2 1016 aa27.61■■■□□ 2.01
SMIM11A-204ENST00000474455 USP54Q70EL1 1684 aa27.61■■■□□ 2.01
SMIM11A-204ENST00000474455 NHSL1Q5SYE7 1610 aa27.6■■■□□ 2.01
SMIM11A-204ENST00000474455 PPM1GO15355 546 aaPredicted RBP27.59■■■□□ 2.01
SMIM11A-204ENST00000474455 PIP4K2BP78356 416 aa27.57■■■□□ 2
SMIM11A-204ENST00000474455 SOS2Q07890 1332 aaPredicted RBP27.56■■■□□ 2
SMIM11A-204ENST00000474455 AATKQ6ZMQ8 1374 aa27.55■■■□□ 2
SMIM11A-204ENST00000474455 CERKQ8TCT0 537 aa27.55■■■□□ 2
SMIM11A-204ENST00000474455 SBNO1A3KN83 1393 aa27.55■■■□□ 2
SMIM11A-204ENST00000474455 MSH5O43196 834 aa27.55■■■□□ 2
SMIM11A-204ENST00000474455 SPATA31A3Q5VYP0 1347 aa27.54■■■□□ 2
SMIM11A-204ENST00000474455 PEAK1Q9H792 1746 aa27.54■■■□□ 2
SMIM11A-204ENST00000474455 SHPRHQ149N8 1683 aa27.54■■■□□ 2
SMIM11A-204ENST00000474455 UBAP1LF5GYI3 381 aa27.53■■■□□ 2
SMIM11A-204ENST00000474455 TOM1O60784 492 aa27.53■■■□□ 2
SMIM11A-204ENST00000474455 TNS3Q68CZ2 1445 aa27.53■■■□□ 2
SMIM11A-204ENST00000474455 SENP3-EIF4A1A0A087X0R7 540 aa27.52■■■□□ 2
SMIM11A-204ENST00000474455 LTN1O94822 1766 aa27.51■■■□□ 2
SMIM11A-204ENST00000474455 IRX6P78412 446 aaPredicted RBP27.51■■□□□ 1.99
SMIM11A-204ENST00000474455 MED1Q15648 1581 aaPredicted RBP27.51■■□□□ 1.99
SMIM11A-204ENST00000474455 CABLES1Q8TDN4 633 aa27.51■■□□□ 1.99
SMIM11A-204ENST00000474455 MAP3K19Q56UN5 1328 aa27.5■■□□□ 1.99
SMIM11A-204ENST00000474455 ADAMTS8Q9UP79 889 aa27.49■■□□□ 1.99
SMIM11A-204ENST00000474455 COL3A1P02461 1466 aaPredicted RBP27.49■■□□□ 1.99
SMIM11A-204ENST00000474455 GCP02774 474 aa27.48■■□□□ 1.99
SMIM11A-204ENST00000474455 NFAT5O94916 1531 aa27.48■■□□□ 1.99
SMIM11A-204ENST00000474455 SMG6Q86US8 1419 aaKnown RBP27.48■■□□□ 1.99
SMIM11A-204ENST00000474455 PNPLA6Q8IY17 1366 aa27.47■■□□□ 1.99
SMIM11A-204ENST00000474455 USP19O94966 1318 aa27.47■■□□□ 1.99
SMIM11A-204ENST00000474455 CRYBG1Q9Y4K1 1723 aa27.47■■□□□ 1.99
SMIM11A-204ENST00000474455 SLIT3O75094 1523 aa27.47■■□□□ 1.99
SMIM11A-204ENST00000474455 CFAP53Q96M91 514 aa27.47■■□□□ 1.99
SMIM11A-204ENST00000474455 AHDC1Q5TGY3 1603 aaPredicted RBP27.45■■□□□ 1.98
SMIM11A-204ENST00000474455 PHRF1Q9P1Y6 1649 aaKnown RBP27.45■■□□□ 1.98
SMIM11A-204ENST00000474455 HSP90AB2PQ58FF8 381 aa27.44■■□□□ 1.98
SMIM11A-204ENST00000474455 IQSEC2Q5JU85 1478 aa27.44■■□□□ 1.98
SMIM11A-204ENST00000474455 PHLPP1O60346 1717 aa27.44■■□□□ 1.98
SMIM11A-204ENST00000474455 ERICH6Q7L0X2 663 aa27.44■■□□□ 1.98
SMIM11A-204ENST00000474455 ZBTB7CA1YPR0 619 aa27.43■■□□□ 1.98
Retrieved 100 of 20,778 RNA–protein pairs in 22.8 ms