RNA–Protein interactions for RNA: ENST00000474432.1

COL7A1-209, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 3

Gene COL7A1, Length 728 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-209ENST00000474432 HAP1P54257 671 aaPredicted RBP26.78■■□□□ 1.88
COL7A1-209ENST00000474432 PLEKHG3A1L390 1219 aa26.77■■□□□ 1.88
COL7A1-209ENST00000474432 CCDC61Q9Y6R9 512 aa26.77■■□□□ 1.88
COL7A1-209ENST00000474432 NRAPQ86VF7 1730 aa26.76■■□□□ 1.87
COL7A1-209ENST00000474432 ACEP12821 1306 aa26.75■■□□□ 1.87
COL7A1-209ENST00000474432 NBPF8Q3BBV2 869 aa26.74■■□□□ 1.87
COL7A1-209ENST00000474432 PAK3O75914 559 aaPredicted RBP26.73■■□□□ 1.87
COL7A1-209ENST00000474432 VPS72Q15906 364 aa26.73■■□□□ 1.87
COL7A1-209ENST00000474432 ATAD2Q6PL18 1390 aa26.72■■□□□ 1.87
COL7A1-209ENST00000474432 COL14A1Q05707 1796 aaKnown RBP26.71■■□□□ 1.87
COL7A1-209ENST00000474432 CABP2Q9NPB3 220 aa26.71■■□□□ 1.87
COL7A1-209ENST00000474432 BRWD3Q6RI45 1802 aa26.71■■□□□ 1.87
COL7A1-209ENST00000474432 PHRF1Q9P1Y6 1649 aaKnown RBP26.7■■□□□ 1.86
COL7A1-209ENST00000474432 PPIP5K1Q6PFW1 1433 aa26.68■■□□□ 1.86
COL7A1-209ENST00000474432 SRPK2P78362 688 aaKnown RBP26.68■■□□□ 1.86
COL7A1-209ENST00000474432 ONECUT3O60422 494 aaPredicted RBP26.67■■□□□ 1.86
COL7A1-209ENST00000474432 ROCK2O75116 1388 aaKnown RBP26.67■■□□□ 1.86
COL7A1-209ENST00000474432 EP400Q96L91 3159 aa26.66■■□□□ 1.86
COL7A1-209ENST00000474432 BTG4Q9NY30 223 aa26.66■■□□□ 1.86
COL7A1-209ENST00000474432 TRIM26Q12899 539 aaPredicted RBP26.64■■□□□ 1.86
COL7A1-209ENST00000474432 NUTM2GQ5VZR2 741 aa26.64■■□□□ 1.86
COL7A1-209ENST00000474432 SEPT12Q8IYM1 358 aa26.62■■□□□ 1.85
COL7A1-209ENST00000474432 KIAA0232Q92628 1395 aa26.61■■□□□ 1.85
COL7A1-209ENST00000474432 CABP1Q9NZU7 370 aa26.61■■□□□ 1.85
COL7A1-209ENST00000474432 NRKQ7Z2Y5 1582 aa26.6■■□□□ 1.85
COL7A1-209ENST00000474432 PRDM11Q9NQV5 511 aa26.59■■□□□ 1.85
COL7A1-209ENST00000474432 CCDC9Q9Y3X0 531 aaKnown RBP26.59■■□□□ 1.85
COL7A1-209ENST00000474432 USP19O94966 1318 aa26.59■■□□□ 1.85
COL7A1-209ENST00000474432 EVC2Q86UK5 1308 aa26.59■■□□□ 1.85
COL7A1-209ENST00000474432 SSH2Q76I76 1423 aa26.58■■□□□ 1.85
COL7A1-209ENST00000474432 ABTB2Q8N961 1025 aa26.58■■□□□ 1.85
COL7A1-209ENST00000474432 USP6P35125 1406 aa26.57■■□□□ 1.84
COL7A1-209ENST00000474432 ZC3H6P61129 1189 aaKnown RBP26.57■■□□□ 1.84
COL7A1-209ENST00000474432 CHRNA2Q15822 529 aa26.57■■□□□ 1.84
COL7A1-209ENST00000474432 SPATA31A5Q5VU36 1347 aa26.56■■□□□ 1.84
COL7A1-209ENST00000474432 SPATA31A7Q8IWB4 1347 aa26.56■■□□□ 1.84
COL7A1-209ENST00000474432 BRD4O60885 1362 aaPredicted RBP26.56■■□□□ 1.84
COL7A1-209ENST00000474432 LMO7Q8WWI1 1683 aa26.54■■□□□ 1.84
COL7A1-209ENST00000474432 FAM98CQ17RN3 349 aaKnown RBP26.53■■□□□ 1.84
COL7A1-209ENST00000474432 TONSLQ96HA7 1378 aa26.53■■□□□ 1.84
COL7A1-209ENST00000474432 AKAP12Q02952 1782 aa26.53■■□□□ 1.84
COL7A1-209ENST00000474432 CPDO75976 1380 aa26.52■■□□□ 1.84
COL7A1-209ENST00000474432 CCDC125Q86Z20 511 aa26.52■■□□□ 1.84
COL7A1-209ENST00000474432 THSD7AQ9UPZ6 1657 aa26.52■■□□□ 1.84
COL7A1-209ENST00000474432 SBNO2Q9Y2G9 1366 aa26.52■■□□□ 1.84
COL7A1-209ENST00000474432 CAMTA1Q9Y6Y1 1673 aa26.52■■□□□ 1.84
COL7A1-209ENST00000474432 PIK3C2AO00443 1686 aa26.51■■□□□ 1.83
COL7A1-209ENST00000474432 KRT27Q7Z3Y8 459 aa26.5■■□□□ 1.83
COL7A1-209ENST00000474432 NLRP13Q86W25 1043 aa26.5■■□□□ 1.83
COL7A1-209ENST00000474432 CARD11Q9BXL7 1154 aa26.5■■□□□ 1.83
COL7A1-209ENST00000474432 GCP02774 474 aa26.49■■□□□ 1.83
COL7A1-209ENST00000474432 SLIT3O75094 1523 aa26.49■■□□□ 1.83
COL7A1-209ENST00000474432 BLMP54132 1417 aaPredicted RBP26.48■■□□□ 1.83
COL7A1-209ENST00000474432 SPATA31A1Q5TZJ5 1347 aa26.48■■□□□ 1.83
COL7A1-209ENST00000474432 CPSF1Q10570 1443 aaKnown RBP26.48■■□□□ 1.83
COL7A1-209ENST00000474432 STRN4Q9NRL3 753 aa26.45■■□□□ 1.82
COL7A1-209ENST00000474432 NLRP6P59044 892 aa26.44■■□□□ 1.82
COL7A1-209ENST00000474432 TTC21BQ7Z4L5 1316 aa26.43■■□□□ 1.82
COL7A1-209ENST00000474432 ZNF692Q9BU19 519 aaPredicted RBP26.43■■□□□ 1.82
COL7A1-209ENST00000474432 COL18A1P39060 1754 aa26.42■■□□□ 1.82
COL7A1-209ENST00000474432 MON2Q7Z3U7 1717 aa26.42■■□□□ 1.82
COL7A1-209ENST00000474432 CD163L1Q9NR16 1453 aa26.42■■□□□ 1.82
COL7A1-209ENST00000474432 A0A0G2JS52 829 aa26.41■■□□□ 1.82
COL7A1-209ENST00000474432 MYT1Q01538 1121 aa26.41■■□□□ 1.82
COL7A1-209ENST00000474432 LARP1Q6PKG0 1096 aaKnown RBP26.41■■□□□ 1.82
COL7A1-209ENST00000474432 DEFB132Q7Z7B7 95 aa26.4■■□□□ 1.82
COL7A1-209ENST00000474432 COL5A2P05997 1499 aaPredicted RBP26.39■■□□□ 1.82
COL7A1-209ENST00000474432 FAM182BQ5T319 152 aa26.39■■□□□ 1.82
COL7A1-209ENST00000474432 AATKQ6ZMQ8 1374 aa26.37■■□□□ 1.81
COL7A1-209ENST00000474432 KTN1Q86UP2 1357 aaKnown RBP26.37■■□□□ 1.81
COL7A1-209ENST00000474432 EVA1CP58658 441 aa26.37■■□□□ 1.81
COL7A1-209ENST00000474432 BARGINQ6ZT62 677 aa26.36■■□□□ 1.81
COL7A1-209ENST00000474432 TESK2Q96S53 571 aa26.36■■□□□ 1.81
COL7A1-209ENST00000474432 TTC21AQ8NDW8 1320 aa26.36■■□□□ 1.81
COL7A1-209ENST00000474432 USP35Q9P2H5 1018 aa26.35■■□□□ 1.81
COL7A1-209ENST00000474432 NFAT5O94916 1531 aa26.33■■□□□ 1.81
COL7A1-209ENST00000474432 USP54Q70EL1 1684 aa26.32■■□□□ 1.8
COL7A1-209ENST00000474432 ARHGEF25Q86VW2 580 aa26.32■■□□□ 1.8
COL7A1-209ENST00000474432 SLC12A5Q9H2X9 1139 aa26.32■■□□□ 1.8
COL7A1-209ENST00000474432 ZRANB1Q9UGI0 708 aa26.32■■□□□ 1.8
COL7A1-209ENST00000474432 AXIN2Q9Y2T1 843 aa26.32■■□□□ 1.8
COL7A1-209ENST00000474432 RGPD1P0DJD0 1748 aa26.31■■□□□ 1.8
COL7A1-209ENST00000474432 RGPD5Q99666 1765 aa26.31■■□□□ 1.8
COL7A1-209ENST00000474432 ST20-MTHFSA0A0A6YYL1 179 aa26.31■■□□□ 1.8
COL7A1-209ENST00000474432 TCP11L2Q8N4U5 519 aa26.31■■□□□ 1.8
COL7A1-209ENST00000474432 PUS7Q96PZ0 661 aaKnown RBP26.31■■□□□ 1.8
COL7A1-209ENST00000474432 TNS1Q9HBL0 1735 aaKnown RBP26.31■■□□□ 1.8
COL7A1-209ENST00000474432 USP31Q70CQ4 1352 aa26.3■■□□□ 1.8
COL7A1-209ENST00000474432 CRB1P82279 1406 aa26.3■■□□□ 1.8
COL7A1-209ENST00000474432 ZBTB7CA1YPR0 619 aa26.29■■□□□ 1.8
COL7A1-209ENST00000474432 SF3B2Q13435 895 aaKnown RBP26.29■■□□□ 1.8
COL7A1-209ENST00000474432 PARP4Q9UKK3 1724 aaKnown RBP26.28■■□□□ 1.8
COL7A1-209ENST00000474432 THRAP3Q9Y2W1 955 aaKnown RBP26.28■■□□□ 1.8
COL7A1-209ENST00000474432 KCNH5Q8NCM2 988 aa26.27■■□□□ 1.8
COL7A1-209ENST00000474432 TMC1Q8TDI8 760 aa26.27■■□□□ 1.8
COL7A1-209ENST00000474432 NME9Q86XW9 330 aa26.26■■□□□ 1.79
COL7A1-209ENST00000474432 SUGP2Q8IX01 1082 aaKnown RBP eCLIP26.26■■□□□ 1.79
COL7A1-209ENST00000474432 A0A1W2PP64 1363 aa26.25■■□□□ 1.79
COL7A1-209ENST00000474432 SOX12O15370 315 aa26.24■■□□□ 1.79
COL7A1-209ENST00000474432 DISP2A7MBM2 1401 aa26.23■■□□□ 1.79
Retrieved 100 of 20,778 RNA–protein pairs in 16.4 ms