RNA–Protein interactions for RNA: ENST00000474215.5

CKS1B-206, Transcript of CDC28 protein kinase regulatory subunit 1B, humanhuman

TSL 3

Gene CKS1B, Length 739 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CKS1B-206ENST00000474215 MARF1Q9Y4F3 1742 aaKnown RBP15.91■□□□□ 0.14
CKS1B-206ENST00000474215 SLIT2O94813 1529 aa15.9■□□□□ 0.14
CKS1B-206ENST00000474215 GJD4Q96KN9 370 aaPredicted RBP15.9■□□□□ 0.14
CKS1B-206ENST00000474215 PPIP5K1Q6PFW1 1433 aa15.9■□□□□ 0.14
CKS1B-206ENST00000474215 ALS2Q96Q42 1657 aa15.89■□□□□ 0.13
CKS1B-206ENST00000474215 RGS12O14924 1447 aa15.89■□□□□ 0.13
CKS1B-206ENST00000474215 PCGF6Q9BYE7 350 aa15.89■□□□□ 0.13
CKS1B-206ENST00000474215 TOPAZ1Q8N9V7 1692 aa15.89■□□□□ 0.13
CKS1B-206ENST00000474215 RALGAPBQ86X10 1494 aa15.88■□□□□ 0.13
CKS1B-206ENST00000474215 NUTM2GQ5VZR2 741 aa15.87■□□□□ 0.13
CKS1B-206ENST00000474215 ABTB2Q8N961 1025 aa15.87■□□□□ 0.13
CKS1B-206ENST00000474215 VPS72Q15906 364 aa15.86■□□□□ 0.13
CKS1B-206ENST00000474215 UPF1Q92900 1129 aaKnown RBP eCLIP15.86■□□□□ 0.132e-28■■■□□ 15.7
CKS1B-206ENST00000474215 BRD4O60885 1362 aaPredicted RBP15.86■□□□□ 0.13
CKS1B-206ENST00000474215 SBNO2Q9Y2G9 1366 aa15.85■□□□□ 0.13
CKS1B-206ENST00000474215 ABCA3Q99758 1704 aa15.85■□□□□ 0.13
CKS1B-206ENST00000474215 ZNF692Q9BU19 519 aaPredicted RBP15.84■□□□□ 0.13
CKS1B-206ENST00000474215 BTG4Q9NY30 223 aa15.84■□□□□ 0.13
CKS1B-206ENST00000474215 TIMELESSQ9UNS1 1208 aa15.84■□□□□ 0.13
CKS1B-206ENST00000474215 CLSPNQ9HAW4 1339 aa15.84■□□□□ 0.13
CKS1B-206ENST00000474215 NLRP13Q86W25 1043 aa15.83■□□□□ 0.12
CKS1B-206ENST00000474215 PRDM11Q9NQV5 511 aa15.83■□□□□ 0.12
CKS1B-206ENST00000474215 CCDC9Q9Y3X0 531 aaKnown RBP15.83■□□□□ 0.12
CKS1B-206ENST00000474215 TNKS1BP1Q9C0C2 1729 aaKnown RBP15.82■□□□□ 0.12
CKS1B-206ENST00000474215 ZC3H6P61129 1189 aaKnown RBP15.82■□□□□ 0.12
CKS1B-206ENST00000474215 ATAD2Q6PL18 1390 aa15.82■□□□□ 0.12
CKS1B-206ENST00000474215 USP6P35125 1406 aa15.82■□□□□ 0.12
CKS1B-206ENST00000474215 KIAA0232Q92628 1395 aa15.81■□□□□ 0.12
CKS1B-206ENST00000474215 NWD2Q9ULI1 1742 aa15.8■□□□□ 0.12
CKS1B-206ENST00000474215 PLCH1Q4KWH8 1693 aa15.8■□□□□ 0.12
CKS1B-206ENST00000474215 USP19O94966 1318 aa15.8■□□□□ 0.12
CKS1B-206ENST00000474215 ST20-MTHFSA0A0A6YYL1 179 aa15.8■□□□□ 0.12
CKS1B-206ENST00000474215 ONECUT3O60422 494 aaPredicted RBP15.8■□□□□ 0.12
CKS1B-206ENST00000474215 GCP02774 474 aa15.79■□□□□ 0.12
CKS1B-206ENST00000474215 NLRP6P59044 892 aa15.79■□□□□ 0.12
CKS1B-206ENST00000474215 CHRNA2Q15822 529 aa15.79■□□□□ 0.12
CKS1B-206ENST00000474215 COL14A1Q05707 1796 aaKnown RBP15.79■□□□□ 0.12
CKS1B-206ENST00000474215 CRYBG1Q9Y4K1 1723 aa15.79■□□□□ 0.12
CKS1B-206ENST00000474215 GLI3P10071 1580 aa15.79■□□□□ 0.12
CKS1B-206ENST00000474215 SSH2Q76I76 1423 aa15.78■□□□□ 0.12
CKS1B-206ENST00000474215 SLC24A1O60721 1099 aa15.78■□□□□ 0.12
CKS1B-206ENST00000474215 SEPT12Q8IYM1 358 aa15.78■□□□□ 0.12
CKS1B-206ENST00000474215 PUS7Q96PZ0 661 aaKnown RBP15.78■□□□□ 0.12
CKS1B-206ENST00000474215 TESK2Q96S53 571 aa15.78■□□□□ 0.12
CKS1B-206ENST00000474215 CPSF1Q10570 1443 aaKnown RBP15.77■□□□□ 0.12
CKS1B-206ENST00000474215 TTC21BQ7Z4L5 1316 aa15.77■□□□□ 0.12
CKS1B-206ENST00000474215 CPDO75976 1380 aa15.76■□□□□ 0.11
CKS1B-206ENST00000474215 KTN1Q86UP2 1357 aaKnown RBP15.76■□□□□ 0.11
CKS1B-206ENST00000474215 TMC1Q8TDI8 760 aa15.76■□□□□ 0.11
CKS1B-206ENST00000474215 PHRF1Q9P1Y6 1649 aaKnown RBP15.76■□□□□ 0.11
CKS1B-206ENST00000474215 SPATA31A5Q5VU36 1347 aa15.75■□□□□ 0.11
CKS1B-206ENST00000474215 SPATA31A7Q8IWB4 1347 aa15.75■□□□□ 0.11
CKS1B-206ENST00000474215 EVA1CP58658 441 aa15.75■□□□□ 0.11
CKS1B-206ENST00000474215 CCER1Q8TC90 406 aaPredicted RBP15.75■□□□□ 0.11
CKS1B-206ENST00000474215 SLC12A5Q9H2X9 1139 aa15.75■□□□□ 0.11
CKS1B-206ENST00000474215 TTC21AQ8NDW8 1320 aa15.74■□□□□ 0.11
CKS1B-206ENST00000474215 FAM98CQ17RN3 349 aaKnown RBP15.74■□□□□ 0.11
CKS1B-206ENST00000474215 STRN4Q9NRL3 753 aa15.74■□□□□ 0.11
CKS1B-206ENST00000474215 A0A0G2JS52 829 aa15.73■□□□□ 0.11
CKS1B-206ENST00000474215 MYT1Q01538 1121 aa15.73■□□□□ 0.11
CKS1B-206ENST00000474215 HDGFL2Q7Z4V5 671 aaPredicted RBP15.73■□□□□ 0.11
CKS1B-206ENST00000474215 TERF2IPQ9NYB0 399 aa15.73■□□□□ 0.11
CKS1B-206ENST00000474215 NRAPQ86VF7 1730 aa15.73■□□□□ 0.11
CKS1B-206ENST00000474215 NRKQ7Z2Y5 1582 aa15.72■□□□□ 0.11
CKS1B-206ENST00000474215 CCDC125Q86Z20 511 aa15.72■□□□□ 0.11
CKS1B-206ENST00000474215 USP47Q96K76 1375 aa15.72■□□□□ 0.11
CKS1B-206ENST00000474215 SPATA31A1Q5TZJ5 1347 aa15.71■□□□□ 0.11
CKS1B-206ENST00000474215 KRT27Q7Z3Y8 459 aa15.71■□□□□ 0.11
CKS1B-206ENST00000474215 SUGP2Q8IX01 1082 aaKnown RBP eCLIP15.71■□□□□ 0.11
CKS1B-206ENST00000474215 KCNH5Q8NCM2 988 aa15.71■□□□□ 0.11
CKS1B-206ENST00000474215 CD163L1Q9NR16 1453 aa15.71■□□□□ 0.1
CKS1B-206ENST00000474215 CAMTA1Q9Y6Y1 1673 aa15.7■□□□□ 0.1
CKS1B-206ENST00000474215 ZBTB7CA1YPR0 619 aa15.7■□□□□ 0.1
CKS1B-206ENST00000474215 AATKQ6ZMQ8 1374 aa15.7■□□□□ 0.1
CKS1B-206ENST00000474215 AKAP12Q02952 1782 aa15.7■□□□□ 0.1
CKS1B-206ENST00000474215 SLIT3O75094 1523 aa15.69■□□□□ 0.1
CKS1B-206ENST00000474215 TMF1P82094 1093 aa15.69■□□□□ 0.1
CKS1B-206ENST00000474215 LARP1Q6PKG0 1096 aaKnown RBP15.69■□□□□ 0.1
CKS1B-206ENST00000474215 EP400Q96L91 3159 aa15.69■□□□□ 0.1
CKS1B-206ENST00000474215 PIK3C2AO00443 1686 aa15.69■□□□□ 0.1
CKS1B-206ENST00000474215 ARHGEF25Q86VW2 580 aa15.68■□□□□ 0.1
CKS1B-206ENST00000474215 USP35Q9P2H5 1018 aa15.68■□□□□ 0.1
CKS1B-206ENST00000474215 ZRANB1Q9UGI0 708 aa15.68■□□□□ 0.1
CKS1B-206ENST00000474215 USP31Q70CQ4 1352 aa15.67■□□□□ 0.1
CKS1B-206ENST00000474215 NINLQ9Y2I6 1382 aa15.67■□□□□ 0.1
CKS1B-206ENST00000474215 SOX12O15370 315 aa15.67■□□□□ 0.1
CKS1B-206ENST00000474215 NME9Q86XW9 330 aa15.67■□□□□ 0.1
CKS1B-206ENST00000474215 EDC4Q6P2E9 1401 aaKnown RBP15.67■□□□□ 0.1
CKS1B-206ENST00000474215 A0A1W2PP64 1363 aa15.66■□□□□ 0.1
CKS1B-206ENST00000474215 CDCA8Q53HL2 280 aa15.66■□□□□ 0.1
CKS1B-206ENST00000474215 BARGINQ6ZT62 677 aa15.66■□□□□ 0.1
CKS1B-206ENST00000474215 TCP11L2Q8N4U5 519 aa15.66■□□□□ 0.1
CKS1B-206ENST00000474215 AXIN2Q9Y2T1 843 aa15.66■□□□□ 0.1
CKS1B-206ENST00000474215 LMO7Q8WWI1 1683 aa15.66■□□□□ 0.1
CKS1B-206ENST00000474215 BRWD3Q6RI45 1802 aa15.66■□□□□ 0.1
CKS1B-206ENST00000474215 MON2Q7Z3U7 1717 aa15.65■□□□□ 0.1
CKS1B-206ENST00000474215 BLMP54132 1417 aaPredicted RBP15.64■□□□□ 0.09
CKS1B-206ENST00000474215 THRAP3Q9Y2W1 955 aaKnown RBP15.64■□□□□ 0.09
CKS1B-206ENST00000474215 COL5A2P05997 1499 aaPredicted RBP15.64■□□□□ 0.09
CKS1B-206ENST00000474215 CRB1P82279 1406 aa15.62■□□□□ 0.09
Retrieved 100 of 20,778 RNA–protein pairs in 7.6 ms