RNA–Protein interactions for RNA: ENST00000474038.1

LIMS1-212, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 1 (best)

Gene LIMS1, Length 679 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-212ENST00000474038 SLIT2O94813 1529 aa21.44■■□□□ 1.02
LIMS1-212ENST00000474038 SRPK2P78362 688 aaKnown RBP21.43■■□□□ 1.02
LIMS1-212ENST00000474038 CABP2Q9NPB3 220 aa21.43■■□□□ 1.02
LIMS1-212ENST00000474038 SBNO2Q9Y2G9 1366 aa21.42■■□□□ 1.02
LIMS1-212ENST00000474038 TNKS1BP1Q9C0C2 1729 aaKnown RBP21.41■■□□□ 1.02
LIMS1-212ENST00000474038 EVC2Q86UK5 1308 aa21.41■■□□□ 1.02
LIMS1-212ENST00000474038 UNC5CLQ8IV45 518 aa21.41■■□□□ 1.02
LIMS1-212ENST00000474038 CCDC61Q9Y6R9 512 aa21.41■■□□□ 1.02
LIMS1-212ENST00000474038 PAK3O75914 559 aaPredicted RBP21.4■■□□□ 1.02
LIMS1-212ENST00000474038 PLCH1Q4KWH8 1693 aa21.38■■□□□ 1.01
LIMS1-212ENST00000474038 GJD4Q96KN9 370 aaPredicted RBP21.38■■□□□ 1.01
LIMS1-212ENST00000474038 ACEP12821 1306 aa21.37■■□□□ 1.01
LIMS1-212ENST00000474038 PLEKHG3A1L390 1219 aa21.37■■□□□ 1.01
LIMS1-212ENST00000474038 PPIP5K1Q6PFW1 1433 aa21.37■■□□□ 1.01
LIMS1-212ENST00000474038 POLR3AO14802 1390 aaPredicted RBP21.36■■□□□ 1.01
LIMS1-212ENST00000474038 CRYBG1Q9Y4K1 1723 aa21.36■■□□□ 1.01
LIMS1-212ENST00000474038 ST20-MTHFSA0A0A6YYL1 179 aa21.36■■□□□ 1.01
LIMS1-212ENST00000474038 GLI3P10071 1580 aa21.36■■□□□ 1.01
LIMS1-212ENST00000474038 USP47Q96K76 1375 aa21.36■■□□□ 1.01
LIMS1-212ENST00000474038 FAM83GA6ND36 823 aa21.35■■□□□ 1.01
LIMS1-212ENST00000474038 NWD2Q9ULI1 1742 aa21.35■■□□□ 1.01
LIMS1-212ENST00000474038 TESK2Q96S53 571 aa21.33■■□□□ 1.01
LIMS1-212ENST00000474038 NUTM2GQ5VZR2 741 aa21.32■■□□□ 1
LIMS1-212ENST00000474038 CABP1Q9NZU7 370 aa21.32■■□□□ 1
LIMS1-212ENST00000474038 AKAP12Q02952 1782 aa21.32■■□□□ 1
LIMS1-212ENST00000474038 ATAD2Q6PL18 1390 aa21.31■■□□□ 1
LIMS1-212ENST00000474038 NRAPQ86VF7 1730 aa21.3■■□□□ 1
LIMS1-212ENST00000474038 VPS72Q15906 364 aa21.3■■□□□ 1
LIMS1-212ENST00000474038 COL14A1Q05707 1796 aaKnown RBP21.3■■□□□ 1
LIMS1-212ENST00000474038 PHRF1Q9P1Y6 1649 aaKnown RBP21.29■■□□□ 1
LIMS1-212ENST00000474038 BTG4Q9NY30 223 aa21.29■■□□□ 1
LIMS1-212ENST00000474038 CCDC9Q9Y3X0 531 aaKnown RBP21.29■■□□□ 1
LIMS1-212ENST00000474038 EP400Q96L91 3159 aa21.26■□□□□ 0.99
LIMS1-212ENST00000474038 SLC24A1O60721 1099 aa21.26■□□□□ 0.99
LIMS1-212ENST00000474038 PRDM11Q9NQV5 511 aa21.26■□□□□ 0.99
LIMS1-212ENST00000474038 KIAA0232Q92628 1395 aa21.25■□□□□ 0.99
LIMS1-212ENST00000474038 ABTB2Q8N961 1025 aa21.25■□□□□ 0.99
LIMS1-212ENST00000474038 PUS7Q96PZ0 661 aaKnown RBP21.25■□□□□ 0.99
LIMS1-212ENST00000474038 BRWD3Q6RI45 1802 aa21.25■□□□□ 0.99
LIMS1-212ENST00000474038 MON2Q7Z3U7 1717 aa21.24■□□□□ 0.99
LIMS1-212ENST00000474038 USP6P35125 1406 aa21.24■□□□□ 0.99
LIMS1-212ENST00000474038 ZC3H6P61129 1189 aaKnown RBP21.23■□□□□ 0.99
LIMS1-212ENST00000474038 CHRNA2Q15822 529 aa21.23■□□□□ 0.99
LIMS1-212ENST00000474038 SEPT12Q8IYM1 358 aa21.23■□□□□ 0.99
LIMS1-212ENST00000474038 NRKQ7Z2Y5 1582 aa21.23■□□□□ 0.99
LIMS1-212ENST00000474038 BRD4O60885 1362 aaPredicted RBP21.22■□□□□ 0.99
LIMS1-212ENST00000474038 CPSF1Q10570 1443 aaKnown RBP21.21■□□□□ 0.99
LIMS1-212ENST00000474038 TMF1P82094 1093 aa21.21■□□□□ 0.99
LIMS1-212ENST00000474038 SSH2Q76I76 1423 aa21.21■□□□□ 0.99
LIMS1-212ENST00000474038 TMC1Q8TDI8 760 aa21.2■□□□□ 0.98
LIMS1-212ENST00000474038 ZNF692Q9BU19 519 aaPredicted RBP21.2■□□□□ 0.98
LIMS1-212ENST00000474038 USP19O94966 1318 aa21.2■□□□□ 0.98
LIMS1-212ENST00000474038 CD163L1Q9NR16 1453 aa21.2■□□□□ 0.98
LIMS1-212ENST00000474038 ONECUT3O60422 494 aaPredicted RBP21.19■□□□□ 0.98
LIMS1-212ENST00000474038 FAM98CQ17RN3 349 aaKnown RBP21.19■□□□□ 0.98
LIMS1-212ENST00000474038 SLC12A5Q9H2X9 1139 aa21.19■□□□□ 0.98
LIMS1-212ENST00000474038 PIK3C2AO00443 1686 aa21.18■□□□□ 0.98
LIMS1-212ENST00000474038 A0A0G2JS52 829 aa21.18■□□□□ 0.98
LIMS1-212ENST00000474038 EIF4G2P78344 907 aaKnown RBP eCLIP21.18■□□□□ 0.98
LIMS1-212ENST00000474038 MYT1Q01538 1121 aa21.18■□□□□ 0.98
LIMS1-212ENST00000474038 NLRP13Q86W25 1043 aa21.18■□□□□ 0.98
LIMS1-212ENST00000474038 HSPA5P11021 654 aaKnown RBP21.17■□□□□ 0.98
LIMS1-212ENST00000474038 SPATA31A5Q5VU36 1347 aa21.17■□□□□ 0.98
LIMS1-212ENST00000474038 SPATA31A7Q8IWB4 1347 aa21.17■□□□□ 0.98
LIMS1-212ENST00000474038 KTN1Q86UP2 1357 aaKnown RBP21.17■□□□□ 0.98
LIMS1-212ENST00000474038 STRN4Q9NRL3 753 aa21.16■□□□□ 0.98
LIMS1-212ENST00000474038 GCP02774 474 aa21.15■□□□□ 0.98
LIMS1-212ENST00000474038 CPDO75976 1380 aa21.14■□□□□ 0.98
LIMS1-212ENST00000474038 NINLQ9Y2I6 1382 aa21.14■□□□□ 0.98
LIMS1-212ENST00000474038 TTC21BQ7Z4L5 1316 aa21.14■□□□□ 0.97
LIMS1-212ENST00000474038 NLRP6P59044 892 aa21.14■□□□□ 0.97
LIMS1-212ENST00000474038 KRT27Q7Z3Y8 459 aa21.14■□□□□ 0.97
LIMS1-212ENST00000474038 MYOM1P52179 1685 aa21.14■□□□□ 0.97
LIMS1-212ENST00000474038 CAMTA1Q9Y6Y1 1673 aa21.13■□□□□ 0.97
LIMS1-212ENST00000474038 CDCA8Q53HL2 280 aa21.13■□□□□ 0.97
LIMS1-212ENST00000474038 HDGFL2Q7Z4V5 671 aaPredicted RBP21.13■□□□□ 0.97
LIMS1-212ENST00000474038 TERF2IPQ9NYB0 399 aa21.13■□□□□ 0.97
LIMS1-212ENST00000474038 A0A1W2PP64 1363 aa21.12■□□□□ 0.97
LIMS1-212ENST00000474038 LMO7Q8WWI1 1683 aa21.12■□□□□ 0.97
LIMS1-212ENST00000474038 SLIT3O75094 1523 aa21.12■□□□□ 0.97
LIMS1-212ENST00000474038 SPATA31A1Q5TZJ5 1347 aa21.11■□□□□ 0.97
LIMS1-212ENST00000474038 TTC21AQ8NDW8 1320 aa21.11■□□□□ 0.97
LIMS1-212ENST00000474038 CCDC125Q86Z20 511 aa21.11■□□□□ 0.97
LIMS1-212ENST00000474038 THSD7AQ9UPZ6 1657 aa21.11■□□□□ 0.97
LIMS1-212ENST00000474038 ZBTB7CA1YPR0 619 aa21.1■□□□□ 0.97
LIMS1-212ENST00000474038 EVA1CP58658 441 aa21.1■□□□□ 0.97
LIMS1-212ENST00000474038 BLMP54132 1417 aaPredicted RBP21.1■□□□□ 0.97
LIMS1-212ENST00000474038 USP54Q70EL1 1684 aa21.09■□□□□ 0.97
LIMS1-212ENST00000474038 USP35Q9P2H5 1018 aa21.09■□□□□ 0.97
LIMS1-212ENST00000474038 EDC4Q6P2E9 1401 aaKnown RBP21.09■□□□□ 0.97
LIMS1-212ENST00000474038 LARP1Q6PKG0 1096 aaKnown RBP21.08■□□□□ 0.97
LIMS1-212ENST00000474038 SUGP2Q8IX01 1082 aaKnown RBP eCLIP21.08■□□□□ 0.97
LIMS1-212ENST00000474038 ANKRD36BQ8N2N9 1353 aa21.07■□□□□ 0.96
LIMS1-212ENST00000474038 FAM182BQ5T319 152 aa21.06■□□□□ 0.96
LIMS1-212ENST00000474038 COL5A2P05997 1499 aaPredicted RBP21.06■□□□□ 0.96
LIMS1-212ENST00000474038 DEFB132Q7Z7B7 95 aa21.05■□□□□ 0.96
LIMS1-212ENST00000474038 SOX12O15370 315 aa21.04■□□□□ 0.96
LIMS1-212ENST00000474038 NME9Q86XW9 330 aa21.04■□□□□ 0.96
LIMS1-212ENST00000474038 ZRANB1Q9UGI0 708 aa21.04■□□□□ 0.96
LIMS1-212ENST00000474038 AATKQ6ZMQ8 1374 aa21.03■□□□□ 0.96
Retrieved 100 of 20,778 RNA–protein pairs in 26.9 ms