RNA–Protein interactions for RNA: ENST00000473829.1

PTCD3-210, Transcript of pentatricopeptide repeat domain 3, humanhuman

TSL 3

Gene PTCD3, Length 587 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCD3-210ENST00000473829 AKAP12Q02952 1782 aa26.79■■□□□ 1.88
PTCD3-210ENST00000473829 ZNF772Q68DY9 489 aaPredicted RBP26.78■■□□□ 1.88
PTCD3-210ENST00000473829 ATAD2Q6PL18 1390 aa26.77■■□□□ 1.88
PTCD3-210ENST00000473829 NGLY1Q96IV0 654 aa26.77■■□□□ 1.88
PTCD3-210ENST00000473829 PHRF1Q9P1Y6 1649 aaKnown RBP26.76■■□□□ 1.87
PTCD3-210ENST00000473829 USP6P35125 1406 aa26.75■■□□□ 1.87
PTCD3-210ENST00000473829 PLCH1Q4KWH8 1693 aa26.73■■□□□ 1.87
PTCD3-210ENST00000473829 NRKQ7Z2Y5 1582 aa26.72■■□□□ 1.87
PTCD3-210ENST00000473829 FNBP4Q8N3X1 1017 aaPredicted RBP26.72■■□□□ 1.87
PTCD3-210ENST00000473829 HAP1P54257 671 aaPredicted RBP26.71■■□□□ 1.87
PTCD3-210ENST00000473829 SSH2Q76I76 1423 aa26.71■■□□□ 1.87
PTCD3-210ENST00000473829 MON2Q7Z3U7 1717 aa26.7■■□□□ 1.87
PTCD3-210ENST00000473829 SLIT2O94813 1529 aa26.7■■□□□ 1.87
PTCD3-210ENST00000473829 BCL9LQ86UU0 1499 aa26.7■■□□□ 1.87
PTCD3-210ENST00000473829 NUTM2GQ5VZR2 741 aa26.7■■□□□ 1.86
PTCD3-210ENST00000473829 CPSF1Q10570 1443 aaKnown RBP26.7■■□□□ 1.86
PTCD3-210ENST00000473829 TNKS1BP1Q9C0C2 1729 aaKnown RBP26.7■■□□□ 1.86
PTCD3-210ENST00000473829 PIK3C2AO00443 1686 aa26.7■■□□□ 1.86
PTCD3-210ENST00000473829 CD163L1Q9NR16 1453 aa26.69■■□□□ 1.86
PTCD3-210ENST00000473829 USP21Q9UK80 565 aa26.69■■□□□ 1.86
PTCD3-210ENST00000473829 SOCS7O14512 581 aa26.68■■□□□ 1.86
PTCD3-210ENST00000473829 BRD4O60885 1362 aaPredicted RBP26.67■■□□□ 1.86
PTCD3-210ENST00000473829 NWD2Q9ULI1 1742 aa26.66■■□□□ 1.86
PTCD3-210ENST00000473829 ATRNO75882 1429 aa26.65■■□□□ 1.86
PTCD3-210ENST00000473829 ABTB2Q8N961 1025 aa26.65■■□□□ 1.86
PTCD3-210ENST00000473829 QTRT2Q9H974 415 aaKnown RBP26.65■■□□□ 1.86
PTCD3-210ENST00000473829 COL14A1Q05707 1796 aaKnown RBP26.63■■□□□ 1.85
PTCD3-210ENST00000473829 NRAPQ86VF7 1730 aa26.63■■□□□ 1.85
PTCD3-210ENST00000473829 PUS7Q96PZ0 661 aaKnown RBP26.63■■□□□ 1.85
PTCD3-210ENST00000473829 USP19O94966 1318 aa26.63■■□□□ 1.85
PTCD3-210ENST00000473829 KTN1Q86UP2 1357 aaKnown RBP26.62■■□□□ 1.85
PTCD3-210ENST00000473829 FAM83GA6ND36 823 aa26.62■■□□□ 1.85
PTCD3-210ENST00000473829 RXRBP28702 533 aa26.62■■□□□ 1.85
PTCD3-210ENST00000473829 SLC12A5Q9H2X9 1139 aa26.62■■□□□ 1.85
PTCD3-210ENST00000473829 TMC1Q8TDI8 760 aa26.61■■□□□ 1.85
PTCD3-210ENST00000473829 ZNF692Q9BU19 519 aaPredicted RBP26.61■■□□□ 1.85
PTCD3-210ENST00000473829 TRPC5Q9UL62 973 aaPredicted RBP26.6■■□□□ 1.85
PTCD3-210ENST00000473829 CDK12Q9NYV4 1490 aaPredicted RBP26.6■■□□□ 1.85
PTCD3-210ENST00000473829 TTC21BQ7Z4L5 1316 aa26.6■■□□□ 1.85
PTCD3-210ENST00000473829 RGS12O14924 1447 aa26.59■■□□□ 1.85
PTCD3-210ENST00000473829 SLIT3O75094 1523 aa26.59■■□□□ 1.85
PTCD3-210ENST00000473829 A0A1W2PP64 1363 aa26.58■■□□□ 1.85
PTCD3-210ENST00000473829 RBM6P78332 1123 aaKnown RBP26.58■■□□□ 1.85
PTCD3-210ENST00000473829 TMF1P82094 1093 aa26.58■■□□□ 1.85
PTCD3-210ENST00000473829 UNC5CLQ8IV45 518 aa26.58■■□□□ 1.85
PTCD3-210ENST00000473829 KIAA0232Q92628 1395 aa26.58■■□□□ 1.84
PTCD3-210ENST00000473829 SLC24A1O60721 1099 aa26.57■■□□□ 1.84
PTCD3-210ENST00000473829 GLI3P10071 1580 aa26.57■■□□□ 1.84
PTCD3-210ENST00000473829 MYOM1P52179 1685 aa26.57■■□□□ 1.84
PTCD3-210ENST00000473829 NLRP13Q86W25 1043 aa26.56■■□□□ 1.84
PTCD3-210ENST00000473829 NINLQ9Y2I6 1382 aa26.55■■□□□ 1.84
PTCD3-210ENST00000473829 NLRP6P59044 892 aa26.54■■□□□ 1.84
PTCD3-210ENST00000473829 ZC3H6P61129 1189 aaKnown RBP26.54■■□□□ 1.84
PTCD3-210ENST00000473829 TTC21AQ8NDW8 1320 aa26.54■■□□□ 1.84
PTCD3-210ENST00000473829 USP54Q70EL1 1684 aa26.54■■□□□ 1.84
PTCD3-210ENST00000473829 HDGFL2Q7Z4V5 671 aaPredicted RBP26.53■■□□□ 1.84
PTCD3-210ENST00000473829 PRDM11Q9NQV5 511 aa26.53■■□□□ 1.84
PTCD3-210ENST00000473829 LMO7Q8WWI1 1683 aa26.53■■□□□ 1.84
PTCD3-210ENST00000473829 HSPA5P11021 654 aaKnown RBP26.52■■□□□ 1.84
PTCD3-210ENST00000473829 CHRNA2Q15822 529 aa26.52■■□□□ 1.84
PTCD3-210ENST00000473829 EDC4Q6P2E9 1401 aaKnown RBP26.52■■□□□ 1.84
PTCD3-210ENST00000473829 BTG4Q9NY30 223 aa26.52■■□□□ 1.84
PTCD3-210ENST00000473829 GCP02774 474 aa26.51■■□□□ 1.83
PTCD3-210ENST00000473829 SUGP2Q8IX01 1082 aaKnown RBP eCLIP26.51■■□□□ 1.83
PTCD3-210ENST00000473829 CPDO75976 1380 aa26.5■■□□□ 1.83
PTCD3-210ENST00000473829 EIF4G2P78344 907 aaKnown RBP eCLIP26.5■■□□□ 1.83
PTCD3-210ENST00000473829 GJD4Q96KN9 370 aaPredicted RBP26.5■■□□□ 1.83
PTCD3-210ENST00000473829 TERF2IPQ9NYB0 399 aa26.5■■□□□ 1.83
PTCD3-210ENST00000473829 ZRANB1Q9UGI0 708 aa26.49■■□□□ 1.83
PTCD3-210ENST00000473829 ANKRD36BQ8N2N9 1353 aa26.48■■□□□ 1.83
PTCD3-210ENST00000473829 VPS72Q15906 364 aa26.48■■□□□ 1.83
PTCD3-210ENST00000473829 NME9Q86XW9 330 aa26.48■■□□□ 1.83
PTCD3-210ENST00000473829 NFAT5O94916 1531 aa26.47■■□□□ 1.83
PTCD3-210ENST00000473829 CAMTA1Q9Y6Y1 1673 aa26.47■■□□□ 1.83
PTCD3-210ENST00000473829 USP31Q70CQ4 1352 aa26.46■■□□□ 1.83
PTCD3-210ENST00000473829 CDCA8Q53HL2 280 aa26.45■■□□□ 1.82
PTCD3-210ENST00000473829 COL18A1P39060 1754 aa26.45■■□□□ 1.82
PTCD3-210ENST00000473829 OVOS2A0A0J9YW53 1432 aa26.42■■□□□ 1.82
PTCD3-210ENST00000473829 OVOS2Q6IE36 1432 aa26.42■■□□□ 1.82
PTCD3-210ENST00000473829 CCDC9Q9Y3X0 531 aaKnown RBP26.42■■□□□ 1.82
PTCD3-210ENST00000473829 SOX12O15370 315 aa26.41■■□□□ 1.82
PTCD3-210ENST00000473829 BRWD3Q6RI45 1802 aa26.41■■□□□ 1.82
PTCD3-210ENST00000473829 ZBTB7CA1YPR0 619 aa26.4■■□□□ 1.82
PTCD3-210ENST00000473829 RGPD5Q99666 1765 aa26.38■■□□□ 1.81
PTCD3-210ENST00000473829 COL5A2P05997 1499 aaPredicted RBP26.38■■□□□ 1.81
PTCD3-210ENST00000473829 AATKQ6ZMQ8 1374 aa26.38■■□□□ 1.81
PTCD3-210ENST00000473829 STRN4Q9NRL3 753 aa26.38■■□□□ 1.81
PTCD3-210ENST00000473829 LTN1O94822 1766 aa26.38■■□□□ 1.81
PTCD3-210ENST00000473829 SPATA31A5Q5VU36 1347 aa26.38■■□□□ 1.81
PTCD3-210ENST00000473829 SPATA31A7Q8IWB4 1347 aa26.38■■□□□ 1.81
PTCD3-210ENST00000473829 ARHGEF25Q86VW2 580 aa26.37■■□□□ 1.81
PTCD3-210ENST00000473829 KCNH5Q8NCM2 988 aa26.37■■□□□ 1.81
PTCD3-210ENST00000473829 KIF20BQ96Q89 1820 aa26.37■■□□□ 1.81
PTCD3-210ENST00000473829 THSD7AQ9UPZ6 1657 aa26.34■■□□□ 1.81
PTCD3-210ENST00000473829 EP400Q96L91 3159 aa26.34■■□□□ 1.81
PTCD3-210ENST00000473829 C11orf95C9JLR9 678 aaPredicted RBP26.34■■□□□ 1.81
PTCD3-210ENST00000473829 POLR3GLQ9BT43 218 aa26.34■■□□□ 1.81
PTCD3-210ENST00000473829 ONECUT3O60422 494 aaPredicted RBP26.33■■□□□ 1.81
PTCD3-210ENST00000473829 LARP1Q6PKG0 1096 aaKnown RBP26.33■■□□□ 1.81
PTCD3-210ENST00000473829 CARD14Q9BXL6 1004 aa26.33■■□□□ 1.81
Retrieved 100 of 20,778 RNA–protein pairs in 15.7 ms