RNA–Protein interactions for RNA: ENST00000473171.5

LSAMP-202, Transcript of limbic system associated membrane protein, humanhuman

TSL 3

Gene LSAMP, Length 640 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LSAMP-202ENST00000473171 MICALL2Q8IY33 904 aa12.1□□□□□ -0.47
LSAMP-202ENST00000473171 SHPRHQ149N8 1683 aa12.1□□□□□ -0.47
LSAMP-202ENST00000473171 DIP2AQ14689 1571 aa12.09□□□□□ -0.47
LSAMP-202ENST00000473171 ABCF1Q8NE71 845 aaKnown RBP eCLIP12.09□□□□□ -0.47
LSAMP-202ENST00000473171 DDX17Q92841 729 aaKnown RBP12.09□□□□□ -0.47
LSAMP-202ENST00000473171 QTRT2Q9H974 415 aaKnown RBP12.09□□□□□ -0.47
LSAMP-202ENST00000473171 AMOTL2Q9Y2J4 779 aa12.09□□□□□ -0.47
LSAMP-202ENST00000473171 PTPRUQ92729 1446 aa12.09□□□□□ -0.47
LSAMP-202ENST00000473171 ASXL1Q8IXJ9 1541 aa12.08□□□□□ -0.48
LSAMP-202ENST00000473171 SIPA1L2Q9P2F8 1722 aaPredicted RBP12.08□□□□□ -0.48
LSAMP-202ENST00000473171 RPRD2Q5VT52 1461 aaKnown RBP12.08□□□□□ -0.48
LSAMP-202ENST00000473171 CHD2O14647 1828 aaKnown RBP12.07□□□□□ -0.48
LSAMP-202ENST00000473171 RBM6P78332 1123 aaKnown RBP12.07□□□□□ -0.48
LSAMP-202ENST00000473171 POTEGQ6S5H5 508 aa12.07□□□□□ -0.48
LSAMP-202ENST00000473171 FAM163AQ96GL9 167 aaPredicted RBP12.07□□□□□ -0.48
LSAMP-202ENST00000473171 TMEM121BQ9BXQ6 578 aaPredicted RBP12.07□□□□□ -0.48
LSAMP-202ENST00000473171 TMEM131LA2VDJ0 1609 aa12.07□□□□□ -0.48
LSAMP-202ENST00000473171 GCC2Q8IWJ2 1684 aa12.06□□□□□ -0.48
LSAMP-202ENST00000473171 SETD5Q9C0A6 1442 aa12.06□□□□□ -0.48
LSAMP-202ENST00000473171 ANKRD50Q9ULJ7 1429 aa12.06□□□□□ -0.48
LSAMP-202ENST00000473171 ADAMTS2O95450 1211 aa12.06□□□□□ -0.48
LSAMP-202ENST00000473171 PNPLA6Q8IY17 1366 aa12.05□□□□□ -0.48
LSAMP-202ENST00000473171 PIK3R4Q99570 1358 aa12.05□□□□□ -0.48
LSAMP-202ENST00000473171 MST1RQ04912 1400 aa12.05□□□□□ -0.48
LSAMP-202ENST00000473171 FAM50AQ14320 339 aaKnown RBP12.05□□□□□ -0.48
LSAMP-202ENST00000473171 SNPHO15079 494 aa12.04□□□□□ -0.48
LSAMP-202ENST00000473171 LRRC59Q96AG4 307 aaKnown RBP12.04□□□□□ -0.48
LSAMP-202ENST00000473171 DCCP43146 1447 aa12.03□□□□□ -0.48
LSAMP-202ENST00000473171 ADGRL2O95490 1459 aa12.03□□□□□ -0.48
LSAMP-202ENST00000473171 TRPM2O94759 1503 aa12.03□□□□□ -0.48
LSAMP-202ENST00000473171 NGLY1Q96IV0 654 aa12.03□□□□□ -0.48
LSAMP-202ENST00000473171 RYDENQ9NUL5 291 aaKnown RBP12.03□□□□□ -0.48
LSAMP-202ENST00000473171 ATAD2Q6PL18 1390 aa12.03□□□□□ -0.48
LSAMP-202ENST00000473171 MYO5BQ9ULV0 1848 aa12.02□□□□□ -0.48
LSAMP-202ENST00000473171 PCDH10Q9P2E7 1040 aa12.01□□□□□ -0.49
LSAMP-202ENST00000473171 METP08581 1390 aa12□□□□□ -0.49
LSAMP-202ENST00000473171 NKX1-1Q15270 411 aaPredicted RBP11.99□□□□□ -0.49
LSAMP-202ENST00000473171 USP21Q9UK80 565 aa11.99□□□□□ -0.49
LSAMP-202ENST00000473171 SETBP1Q9Y6X0 1596 aa11.99□□□□□ -0.49
LSAMP-202ENST00000473171 NHSL1Q5SYE7 1610 aa11.98□□□□□ -0.49
LSAMP-202ENST00000473171 UNC13BO14795 1591 aa11.98□□□□□ -0.49
LSAMP-202ENST00000473171 ADGRL3Q9HAR2 1447 aa11.98□□□□□ -0.49
LSAMP-202ENST00000473171 PPP1R37O75864 691 aa11.97□□□□□ -0.49
LSAMP-202ENST00000473171 ZNF326Q5BKZ1 582 aaKnown RBP11.97□□□□□ -0.49
LSAMP-202ENST00000473171 XRN1Q8IZH2 1706 aaKnown RBP11.97□□□□□ -0.49
LSAMP-202ENST00000473171 ORAI2Q96SN7 254 aa11.96□□□□□ -0.49
LSAMP-202ENST00000473171 TRPC5Q9UL62 973 aaPredicted RBP11.96□□□□□ -0.49
LSAMP-202ENST00000473171 C1orf167Q5SNV9 1468 aa11.95□□□□□ -0.5
LSAMP-202ENST00000473171 E9PCH4 1651 aa11.95□□□□□ -0.5
LSAMP-202ENST00000473171 NUP155O75694 1391 aa11.94□□□□□ -0.5
LSAMP-202ENST00000473171 NRXN3Q9Y4C0 1643 aa11.94□□□□□ -0.5
LSAMP-202ENST00000473171 ATRNO75882 1429 aa11.94□□□□□ -0.5
LSAMP-202ENST00000473171 FNBP4Q8N3X1 1017 aaPredicted RBP11.93□□□□□ -0.5
LSAMP-202ENST00000473171 SOS2Q07890 1332 aaPredicted RBP11.92□□□□□ -0.5
LSAMP-202ENST00000473171 TMEM92Q6UXU6 159 aa11.92□□□□□ -0.5
LSAMP-202ENST00000473171 ST18O60284 1047 aa11.91□□□□□ -0.5
LSAMP-202ENST00000473171 PTCH1Q13635 1447 aa11.91□□□□□ -0.5
LSAMP-202ENST00000473171 NALCNQ8IZF0 1738 aa11.91□□□□□ -0.5
LSAMP-202ENST00000473171 ITGAEP38570 1179 aa11.9□□□□□ -0.5
LSAMP-202ENST00000473171 XPCQ01831 940 aaPredicted RBP11.9□□□□□ -0.5
LSAMP-202ENST00000473171 TMC2Q8TDI7 906 aa11.9□□□□□ -0.5
LSAMP-202ENST00000473171 ROBO2Q9HCK4 1378 aa11.9□□□□□ -0.5
LSAMP-202ENST00000473171 IQGAP3Q86VI3 1631 aa11.89□□□□□ -0.51
LSAMP-202ENST00000473171 ZNF710Q8N1W2 664 aa11.89□□□□□ -0.51
LSAMP-202ENST00000473171 BCL9LQ86UU0 1499 aa11.89□□□□□ -0.51
LSAMP-202ENST00000473171 DOK7Q18PE1 504 aa11.88□□□□□ -0.51
LSAMP-202ENST00000473171 DEFB132Q7Z7B7 95 aa11.88□□□□□ -0.51
LSAMP-202ENST00000473171 CCDC125Q86Z20 511 aa11.88□□□□□ -0.51
LSAMP-202ENST00000473171 GJD4Q96KN9 370 aaPredicted RBP11.88□□□□□ -0.51
LSAMP-202ENST00000473171 EP400Q96L91 3159 aa11.88□□□□□ -0.51
LSAMP-202ENST00000473171 MYOM2P54296 1465 aa11.88□□□□□ -0.51
LSAMP-202ENST00000473171 GTPBP6O43824 516 aaPredicted RBP11.87□□□□□ -0.51
LSAMP-202ENST00000473171 LCE2DQ5TA82 110 aaPredicted RBP11.87□□□□□ -0.51
LSAMP-202ENST00000473171 BBXQ8WY36 941 aaPredicted RBP11.87□□□□□ -0.51
LSAMP-202ENST00000473171 RIMBP2O15034 1052 aa11.86□□□□□ -0.51
LSAMP-202ENST00000473171 ESCO1Q5FWF5 840 aa11.86□□□□□ -0.51
LSAMP-202ENST00000473171 ROCK1Q13464 1354 aa11.86□□□□□ -0.51
LSAMP-202ENST00000473171 NEXMIFQ5QGS0 1516 aa11.86□□□□□ -0.51
LSAMP-202ENST00000473171 C2orf72A6NCS6 295 aa11.85□□□□□ -0.51
LSAMP-202ENST00000473171 BLMP54132 1417 aaPredicted RBP11.85□□□□□ -0.51
LSAMP-202ENST00000473171 NPHP3Q7Z494 1330 aa11.85□□□□□ -0.51
LSAMP-202ENST00000473171 NUTM2FA1L443 756 aa11.84□□□□□ -0.51
LSAMP-202ENST00000473171 FOXO3O43524 673 aa11.84□□□□□ -0.51
LSAMP-202ENST00000473171 ZBTB4Q9P1Z0 1013 aaPredicted RBP11.84□□□□□ -0.51
LSAMP-202ENST00000473171 LAMC1P11047 1609 aa11.84□□□□□ -0.51
LSAMP-202ENST00000473171 RALGAPBQ86X10 1494 aa11.83□□□□□ -0.52
LSAMP-202ENST00000473171 PXDNQ92626 1479 aa11.83□□□□□ -0.52
LSAMP-202ENST00000473171 COL22A1Q8NFW1 1626 aaPredicted RBP11.82□□□□□ -0.52
LSAMP-202ENST00000473171 PSDA5PKW4 1024 aaPredicted RBP11.82□□□□□ -0.52
LSAMP-202ENST00000473171 HOXB3P14651 431 aaPredicted RBP11.82□□□□□ -0.52
LSAMP-202ENST00000473171 SF3B2Q13435 895 aaKnown RBP11.82□□□□□ -0.52
LSAMP-202ENST00000473171 UNC5CLQ8IV45 518 aa11.82□□□□□ -0.52
LSAMP-202ENST00000473171 CLTCL1P53675 1640 aa11.81□□□□□ -0.52
LSAMP-202ENST00000473171 SPHKAPQ2M3C7 1700 aa11.8□□□□□ -0.52
LSAMP-202ENST00000473171 HFM1A2PYH4 1435 aa11.8□□□□□ -0.52
LSAMP-202ENST00000473171 SEPT12Q8IYM1 358 aa11.8□□□□□ -0.52
LSAMP-202ENST00000473171 GLI3P10071 1580 aa11.79□□□□□ -0.52
LSAMP-202ENST00000473171 KIF3CO14782 793 aa11.79□□□□□ -0.52
LSAMP-202ENST00000473171 MARVELD3Q96A59 401 aa11.79□□□□□ -0.52
LSAMP-202ENST00000473171 CCDC9Q9Y3X0 531 aaKnown RBP11.79□□□□□ -0.52
Retrieved 100 of 20,778 RNA–protein pairs in 19.3 ms