RNA–Protein interactions for RNA: ENST00000471494.5

RNF220-208, Transcript of ring finger protein 220, human

TSL 5

Gene RNF220, Length 720 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
RNF220-208	ENST00000471494	UNC5CL	Q8IV45	518 aa		33.5	■■■□□ 2.95
RNF220-208	ENST00000471494	POLR3A	O14802	1390 aa	Predicted RBP	33.49	■■■□□ 2.95
RNF220-208	ENST00000471494	UPF1	Q92900	1129 aa	Known RBP eCLIP	33.47	■■■□□ 2.95
RNF220-208	ENST00000471494	ACE	P12821	1306 aa		33.47	■■■□□ 2.95
RNF220-208	ENST00000471494	PPIP5K1	Q6PFW1	1433 aa		33.45	■■■□□ 2.95
RNF220-208	ENST00000471494	PLEKHG3	A1L390	1219 aa		33.45	■■■□□ 2.95
RNF220-208	ENST00000471494	NBPF8	Q3BBV2	869 aa		33.45	■■■□□ 2.95
RNF220-208	ENST00000471494	GJD4	Q96KN9	370 aa	Predicted RBP	33.45	■■■□□ 2.95
RNF220-208	ENST00000471494	CABP2	Q9NPB3	220 aa		33.45	■■■□□ 2.95
RNF220-208	ENST00000471494	COL14A1	Q05707	1796 aa	Known RBP	33.44	■■■□□ 2.94
RNF220-208	ENST00000471494	GLI3	P10071	1580 aa		33.43	■■■□□ 2.94
RNF220-208	ENST00000471494	RALGAPB	Q86X10	1494 aa		33.43	■■■□□ 2.94
RNF220-208	ENST00000471494	PHRF1	Q9P1Y6	1649 aa	Known RBP	33.42	■■■□□ 2.94
RNF220-208	ENST00000471494	NRAP	Q86VF7	1730 aa		33.4	■■■□□ 2.94
RNF220-208	ENST00000471494	EVC2	Q86UK5	1308 aa		33.4	■■■□□ 2.94
RNF220-208	ENST00000471494	FAM83G	A6ND36	823 aa		33.39	■■■□□ 2.94
RNF220-208	ENST00000471494	ATAD2	Q6PL18	1390 aa		33.38	■■■□□ 2.93
RNF220-208	ENST00000471494	VPS72	Q15906	364 aa		33.36	■■■□□ 2.93
RNF220-208	ENST00000471494	CARD11	Q9BXL7	1154 aa		33.34	■■■□□ 2.93
RNF220-208	ENST00000471494	CCDC9	Q9Y3X0	531 aa	Known RBP	33.34	■■■□□ 2.93
RNF220-208	ENST00000471494	NUTM2G	Q5VZR2	741 aa		33.32	■■■□□ 2.92
RNF220-208	ENST00000471494	BRWD3	Q6RI45	1802 aa		33.31	■■■□□ 2.92
RNF220-208	ENST00000471494	PRDM11	Q9NQV5	511 aa		33.31	■■■□□ 2.92
RNF220-208	ENST00000471494	BTG4	Q9NY30	223 aa		33.31	■■■□□ 2.92
RNF220-208	ENST00000471494	CABP1	Q9NZU7	370 aa		33.31	■■■□□ 2.92
RNF220-208	ENST00000471494	ABTB2	Q8N961	1025 aa		33.3	■■■□□ 2.92
RNF220-208	ENST00000471494	BRD4	O60885	1362 aa	Predicted RBP	33.3	■■■□□ 2.92
RNF220-208	ENST00000471494	NRK	Q7Z2Y5	1582 aa		33.29	■■■□□ 2.92
RNF220-208	ENST00000471494	USP6	P35125	1406 aa		33.28	■■■□□ 2.92
RNF220-208	ENST00000471494	KIAA0232	Q92628	1395 aa		33.27	■■■□□ 2.92
RNF220-208	ENST00000471494	SBNO2	Q9Y2G9	1366 aa		33.27	■■■□□ 2.92
RNF220-208	ENST00000471494	AKAP12	Q02952	1782 aa		33.26	■■■□□ 2.92
RNF220-208	ENST00000471494	ZC3H6	P61129	1189 aa	Known RBP	33.22	■■■□□ 2.91
RNF220-208	ENST00000471494	USP19	O94966	1318 aa		33.22	■■■□□ 2.91
RNF220-208	ENST00000471494	NLRP13	Q86W25	1043 aa		33.21	■■■□□ 2.91
RNF220-208	ENST00000471494	SEPT12	Q8IYM1	358 aa		33.21	■■■□□ 2.91
RNF220-208	ENST00000471494	EP400	Q96L91	3159 aa		33.2	■■■□□ 2.91
RNF220-208	ENST00000471494	CHRNA2	Q15822	529 aa		33.2	■■■□□ 2.91
RNF220-208	ENST00000471494	PIK3C2A	O00443	1686 aa		33.19	■■■□□ 2.9
RNF220-208	ENST00000471494	ONECUT3	O60422	494 aa	Predicted RBP	33.17	■■■□□ 2.9
RNF220-208	ENST00000471494		A0A0G2JS52	829 aa		33.16	■■■□□ 2.9
RNF220-208	ENST00000471494	MYT1	Q01538	1121 aa		33.16	■■■□□ 2.9
RNF220-208	ENST00000471494	SSH2	Q76I76	1423 aa		33.16	■■■□□ 2.9
RNF220-208	ENST00000471494	CPD	O75976	1380 aa		33.15	■■■□□ 2.9
RNF220-208	ENST00000471494	ZNF692	Q9BU19	519 aa	Predicted RBP	33.15	■■■□□ 2.9
RNF220-208	ENST00000471494	MON2	Q7Z3U7	1717 aa		33.14	■■■□□ 2.9
RNF220-208	ENST00000471494	SPATA31A5	Q5VU36	1347 aa		33.14	■■■□□ 2.9
RNF220-208	ENST00000471494	SPATA31A7	Q8IWB4	1347 aa		33.14	■■■□□ 2.9
RNF220-208	ENST00000471494	FAM98C	Q17RN3	349 aa	Known RBP	33.14	■■■□□ 2.9
RNF220-208	ENST00000471494	LMO7	Q8WWI1	1683 aa		33.13	■■■□□ 2.89
RNF220-208	ENST00000471494	NLRP6	P59044	892 aa		33.13	■■■□□ 2.89
RNF220-208	ENST00000471494	GC	P02774	474 aa		33.12	■■■□□ 2.89
RNF220-208	ENST00000471494	STRN4	Q9NRL3	753 aa		33.12	■■■□□ 2.89
RNF220-208	ENST00000471494	SLIT3	O75094	1523 aa		33.12	■■■□□ 2.89
RNF220-208	ENST00000471494	CPSF1	Q10570	1443 aa	Known RBP	33.11	■■■□□ 2.89
RNF220-208	ENST00000471494	KTN1	Q86UP2	1357 aa	Known RBP	33.09	■■■□□ 2.89
RNF220-208	ENST00000471494	CCDC125	Q86Z20	511 aa		33.09	■■■□□ 2.89
RNF220-208	ENST00000471494	CAMTA1	Q9Y6Y1	1673 aa		33.09	■■■□□ 2.89
RNF220-208	ENST00000471494	TTC21B	Q7Z4L5	1316 aa		33.08	■■■□□ 2.89
RNF220-208	ENST00000471494	THSD7A	Q9UPZ6	1657 aa		33.08	■■■□□ 2.89
RNF220-208	ENST00000471494	KRT27	Q7Z3Y8	459 aa		33.08	■■■□□ 2.89
RNF220-208	ENST00000471494	PCGF6	Q9BYE7	350 aa		33.08	■■■□□ 2.89
RNF220-208	ENST00000471494	TTC21A	Q8NDW8	1320 aa		33.06	■■■□□ 2.88
RNF220-208	ENST00000471494	EVA1C	P58658	441 aa		33.06	■■■□□ 2.88
RNF220-208	ENST00000471494	SPATA31A1	Q5TZJ5	1347 aa		33.05	■■■□□ 2.88
RNF220-208	ENST00000471494	BLM	P54132	1417 aa	Predicted RBP	33.04	■■■□□ 2.88
RNF220-208	ENST00000471494	TMC1	Q8TDI8	760 aa		33.03	■■■□□ 2.88
RNF220-208	ENST00000471494	CLSPN	Q9HAW4	1339 aa		33.02	■■■□□ 2.88
RNF220-208	ENST00000471494	ZBTB7C	A1YPR0	619 aa		33.02	■■■□□ 2.88
RNF220-208	ENST00000471494	ST20-MTHFS	A0A0A6YYL1	179 aa		33.01	■■■□□ 2.87
RNF220-208	ENST00000471494	CD163L1	Q9NR16	1453 aa		33	■■■□□ 2.87
RNF220-208	ENST00000471494	COL5A2	P05997	1499 aa	Predicted RBP	32.99	■■■□□ 2.87
RNF220-208	ENST00000471494	PUS7	Q96PZ0	661 aa	Known RBP	32.99	■■■□□ 2.87
RNF220-208	ENST00000471494	TESK2	Q96S53	571 aa		32.99	■■■□□ 2.87
RNF220-208	ENST00000471494	HDGFL2	Q7Z4V5	671 aa	Predicted RBP	32.98	■■■□□ 2.87
RNF220-208	ENST00000471494	USP35	Q9P2H5	1018 aa		32.98	■■■□□ 2.87
RNF220-208	ENST00000471494	AATK	Q6ZMQ8	1374 aa		32.97	■■■□□ 2.87
RNF220-208	ENST00000471494	COL18A1	P39060	1754 aa		32.97	■■■□□ 2.87
RNF220-208	ENST00000471494	SLC24A1	O60721	1099 aa		32.97	■■■□□ 2.87
RNF220-208	ENST00000471494	LARP1	Q6PKG0	1096 aa	Known RBP	32.97	■■■□□ 2.87
RNF220-208	ENST00000471494	USP54	Q70EL1	1684 aa		32.97	■■■□□ 2.87
RNF220-208	ENST00000471494	USP47	Q96K76	1375 aa		32.96	■■■□□ 2.87
RNF220-208	ENST00000471494	KCNH5	Q8NCM2	988 aa		32.96	■■■□□ 2.87
RNF220-208	ENST00000471494	TIMELESS	Q9UNS1	1208 aa		32.96	■■■□□ 2.87
RNF220-208	ENST00000471494	SF3B2	Q13435	895 aa	Known RBP	32.95	■■■□□ 2.87
RNF220-208	ENST00000471494	SLC12A5	Q9H2X9	1139 aa		32.95	■■■□□ 2.87
RNF220-208	ENST00000471494	SUGP2	Q8IX01	1082 aa	Known RBP eCLIP	32.94	■■■□□ 2.86
RNF220-208	ENST00000471494	TERF2IP	Q9NYB0	399 aa		32.94	■■■□□ 2.86
RNF220-208	ENST00000471494	SOX12	O15370	315 aa		32.93	■■■□□ 2.86
RNF220-208	ENST00000471494	RGPD5	Q99666	1765 aa		32.93	■■■□□ 2.86
RNF220-208	ENST00000471494	NFAT5	O94916	1531 aa		32.92	■■■□□ 2.86
RNF220-208	ENST00000471494	RGPD1	P0DJD0	1748 aa		32.92	■■■□□ 2.86
RNF220-208	ENST00000471494	NINL	Q9Y2I6	1382 aa		32.92	■■■□□ 2.86
RNF220-208	ENST00000471494	EDC4	Q6P2E9	1401 aa	Known RBP	32.92	■■■□□ 2.86
RNF220-208	ENST00000471494	BARGIN	Q6ZT62	677 aa		32.91	■■■□□ 2.86
RNF220-208	ENST00000471494		A0A1W2PP64	1363 aa		32.91	■■■□□ 2.86
RNF220-208	ENST00000471494	TCP11L2	Q8N4U5	519 aa		32.9	■■■□□ 2.86
RNF220-208	ENST00000471494	CRB1	P82279	1406 aa		32.9	■■■□□ 2.86
RNF220-208	ENST00000471494	USP31	Q70CQ4	1352 aa		32.89	■■■□□ 2.86
RNF220-208	ENST00000471494	ARHGEF25	Q86VW2	580 aa		32.88	■■■□□ 2.85

Retrieved 100 of 20,778 RNA–protein pairs in 62 ms