RNA–Protein interactions for RNA: ENST00000471307.6

CCDC39-202, Transcript of coiled-coil domain containing 39, humanhuman

TSL 3

Gene CCDC39, Length 783 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC39-202ENST00000471307 RC3H1Q5TC82 1133 aaKnown RBP12.86□□□□□ -0.35
CCDC39-202ENST00000471307 PRKCSHP14314 528 aaPredicted RBP12.85□□□□□ -0.35
CCDC39-202ENST00000471307 MRGPRX2Q96LB1 330 aa12.85□□□□□ -0.35
CCDC39-202ENST00000471307 SH3BP2P78314 561 aa12.84□□□□□ -0.35
CCDC39-202ENST00000471307 TRAF7Q6Q0C0 670 aa12.84□□□□□ -0.35
CCDC39-202ENST00000471307 SNIP1Q8TAD8 396 aaKnown RBP12.84□□□□□ -0.35
CCDC39-202ENST00000471307 MAP10Q9P2G4 905 aa12.84□□□□□ -0.35
CCDC39-202ENST00000471307 ZNF511Q8NB15 262 aa12.83□□□□□ -0.36
CCDC39-202ENST00000471307 ARMC2Q8NEN0 867 aa12.83□□□□□ -0.36
CCDC39-202ENST00000471307 FAM187AA6NFU0 413 aa12.82□□□□□ -0.36
CCDC39-202ENST00000471307 CTDSPL2Q05D32 466 aa12.82□□□□□ -0.36
CCDC39-202ENST00000471307 FBXO31Q5XUX0 539 aaPredicted RBP12.82□□□□□ -0.36
CCDC39-202ENST00000471307 BAP1Q92560 729 aa12.82□□□□□ -0.36
CCDC39-202ENST00000471307 TTC24A2A3L6 582 aaPredicted RBP12.81□□□□□ -0.36
CCDC39-202ENST00000471307 EHBP1Q8NDI1 1231 aa12.81□□□□□ -0.36
CCDC39-202ENST00000471307 RFC5P40937 340 aa12.79□□□□□ -0.36
CCDC39-202ENST00000471307 LINC01559Q495D7 138 aa12.79□□□□□ -0.36
CCDC39-202ENST00000471307 VARSP26640 1264 aaKnown RBP12.78□□□□□ -0.36
CCDC39-202ENST00000471307 NBPF14Q5TI25 921 aa12.78□□□□□ -0.36
CCDC39-202ENST00000471307 LCE2BO14633 110 aa12.77□□□□□ -0.37
CCDC39-202ENST00000471307 TMEM259Q4ZIN3 620 aa12.77□□□□□ -0.37
CCDC39-202ENST00000471307 GPKOWQ92917 476 aaPredicted RBP eCLIP12.77□□□□□ -0.37
CCDC39-202ENST00000471307 SIAH2O43255 324 aa12.76□□□□□ -0.37
CCDC39-202ENST00000471307 AP1G2O75843 785 aa12.76□□□□□ -0.37
CCDC39-202ENST00000471307 AVPP01185 164 aa12.76□□□□□ -0.37
CCDC39-202ENST00000471307 MYT1Q01538 1121 aa12.75□□□□□ -0.37
CCDC39-202ENST00000471307 MPNDQ8N594 471 aa12.75□□□□□ -0.37
CCDC39-202ENST00000471307 CRIPAKQ8N1N5 446 aa12.74□□□□□ -0.37
CCDC39-202ENST00000471307 LRRN4Q8WUT4 740 aa12.74□□□□□ -0.37
CCDC39-202ENST00000471307 SMPD1P17405 629 aa12.73□□□□□ -0.37
CCDC39-202ENST00000471307 CTC1Q2NKJ3 1217 aa12.73□□□□□ -0.37
CCDC39-202ENST00000471307 BPHLQ86WA6 291 aaPredicted RBP12.73□□□□□ -0.37
CCDC39-202ENST00000471307 ZC3H4Q9UPT8 1303 aaKnown RBP12.72□□□□□ -0.37
CCDC39-202ENST00000471307 USP17L8P0C7I0 530 aa12.72□□□□□ -0.37
CCDC39-202ENST00000471307 FAM174AQ8TBP5 190 aa12.71□□□□□ -0.37
CCDC39-202ENST00000471307 J3QL48 77 aa12.7□□□□□ -0.38
CCDC39-202ENST00000471307 SMCPP49901 116 aaPredicted RBP12.7□□□□□ -0.38
CCDC39-202ENST00000471307 PNMA1Q8ND90 353 aa12.7□□□□□ -0.38
CCDC39-202ENST00000471307 FKBPLQ9UIM3 349 aa12.7□□□□□ -0.38
CCDC39-202ENST00000471307 ALDH1A1P00352 501 aa12.69□□□□□ -0.38
CCDC39-202ENST00000471307 SH3RF1Q7Z6J0 888 aa12.69□□□□□ -0.38
CCDC39-202ENST00000471307 FOXJ1Q92949 421 aa12.69□□□□□ -0.38
CCDC39-202ENST00000471307 AGERQ15109 404 aa12.68□□□□□ -0.38
CCDC39-202ENST00000471307 NR6A1Q15406 480 aa12.68□□□□□ -0.38
CCDC39-202ENST00000471307 SH3BP5LQ7L8J4 393 aa12.68□□□□□ -0.38
CCDC39-202ENST00000471307 PDXDC2PQ6P474 469 aa12.67□□□□□ -0.38
CCDC39-202ENST00000471307 BANK1Q8NDB2 785 aa12.67□□□□□ -0.38
CCDC39-202ENST00000471307 SOCS7O14512 581 aa12.66□□□□□ -0.38
CCDC39-202ENST00000471307 AAASQ9NRG9 546 aa12.66□□□□□ -0.38
CCDC39-202ENST00000471307 WASF2Q9Y6W5 498 aa12.66□□□□□ -0.38
CCDC39-202ENST00000471307 C4orf48Q5BLP8 95 aa12.65□□□□□ -0.38
CCDC39-202ENST00000471307 CDK15Q96Q40 435 aa12.65□□□□□ -0.38
CCDC39-202ENST00000471307 AXIN1O15169 862 aa12.64□□□□□ -0.39
CCDC39-202ENST00000471307 C1QTNF2Q9BXJ5 285 aa12.64□□□□□ -0.39
CCDC39-202ENST00000471307 HMX1Q9NP08 348 aaPredicted RBP12.64□□□□□ -0.39
CCDC39-202ENST00000471307 GPSM3Q9Y4H4 160 aa12.64□□□□□ -0.39
CCDC39-202ENST00000471307 TLL2Q9Y6L7 1015 aa12.64□□□□□ -0.39
CCDC39-202ENST00000471307 TRMT44Q8IYL2 757 aaKnown RBP12.62□□□□□ -0.39
CCDC39-202ENST00000471307 HPS1Q92902 700 aa12.61□□□□□ -0.39
CCDC39-202ENST00000471307 ST8SIA5O15466 376 aa12.6□□□□□ -0.39
CCDC39-202ENST00000471307 ADH1CP00326 375 aa12.6□□□□□ -0.39
CCDC39-202ENST00000471307 EPS8L1Q8TE68 723 aa12.6□□□□□ -0.39
CCDC39-202ENST00000471307 MAP4K5Q9Y4K4 846 aa12.6□□□□□ -0.39
CCDC39-202ENST00000471307 PTK2Q05397 1052 aa12.59□□□□□ -0.39
CCDC39-202ENST00000471307 ARHGAP9Q9BRR9 750 aa12.59□□□□□ -0.39
CCDC39-202ENST00000471307 TRIM34Q9BYJ4 488 aa12.59□□□□□ -0.39
CCDC39-202ENST00000471307 MAGEB6P1A0A0J9YX57 407 aa12.58□□□□□ -0.4
CCDC39-202ENST00000471307 APBB1O00213 710 aa12.58□□□□□ -0.4
CCDC39-202ENST00000471307 NR5A1Q13285 461 aa12.57□□□□□ -0.4
CCDC39-202ENST00000471307 CDV3Q9UKY7 258 aaKnown RBP12.57□□□□□ -0.4
CCDC39-202ENST00000471307 NNTQ13423 1086 aa12.56□□□□□ -0.4
CCDC39-202ENST00000471307 ERFEQ4G0M1 354 aa12.56□□□□□ -0.4
CCDC39-202ENST00000471307 GJD4Q96KN9 370 aaPredicted RBP12.56□□□□□ -0.4
CCDC39-202ENST00000471307 ARID5BQ14865 1188 aa12.55□□□□□ -0.4
CCDC39-202ENST00000471307 ZBTB33Q86T24 672 aa12.55□□□□□ -0.4
CCDC39-202ENST00000471307 CARD14Q9BXL6 1004 aa12.55□□□□□ -0.4
CCDC39-202ENST00000471307 ZNF787Q6DD87 383 aa12.54□□□□□ -0.4
CCDC39-202ENST00000471307 GRM5P41594 1212 aa12.53□□□□□ -0.4
CCDC39-202ENST00000471307 VASH1Q7L8A9 365 aaPredicted RBP12.52□□□□□ -0.41
CCDC39-202ENST00000471307 SLC10A4Q96EP9 437 aa12.52□□□□□ -0.41
CCDC39-202ENST00000471307 OCSTAMPQ9BR26 566 aa12.52□□□□□ -0.41
CCDC39-202ENST00000471307 MTMR14Q8NCE2 650 aa12.51□□□□□ -0.41
CCDC39-202ENST00000471307 CAPN5O15484 640 aaPredicted RBP12.5□□□□□ -0.41
CCDC39-202ENST00000471307 ATP13A2Q9NQ11 1180 aa12.5□□□□□ -0.41
CCDC39-202ENST00000471307 DACH1Q9UI36 760 aa12.5□□□□□ -0.41
CCDC39-202ENST00000471307 ADAM32Q8TC27 787 aa12.49□□□□□ -0.41
CCDC39-202ENST00000471307 NDUFB9Q9Y6M9 179 aa12.49□□□□□ -0.41
CCDC39-202ENST00000471307 FSHRP23945 695 aa12.48□□□□□ -0.41
CCDC39-202ENST00000471307 KLF16Q9BXK1 252 aaPredicted RBP12.48□□□□□ -0.41
CCDC39-202ENST00000471307 TIMP2P16035 220 aa12.47□□□□□ -0.41
CCDC39-202ENST00000471307 SENP2Q9HC62 589 aa12.47□□□□□ -0.41
CCDC39-202ENST00000471307 SNRKQ9NRH2 765 aa12.47□□□□□ -0.41
CCDC39-202ENST00000471307 ZBBXA8MT70 800 aa12.46□□□□□ -0.41
CCDC39-202ENST00000471307 NR3C2P08235 984 aa12.46□□□□□ -0.41
CCDC39-202ENST00000471307 WDR4P57081 412 aaKnown RBP12.46□□□□□ -0.41
CCDC39-202ENST00000471307 NBPF20Q3BBV1 942 aa12.46□□□□□ -0.41
CCDC39-202ENST00000471307 PRM3Q9NNZ6 103 aa12.45□□□□□ -0.42
CCDC39-202ENST00000471307 GMPR2Q9P2T1 348 aaKnown RBP12.45□□□□□ -0.42
CCDC39-202ENST00000471307 CCDC116Q8IYX3 515 aa12.44□□□□□ -0.42
CCDC39-202ENST00000471307 KIFC2Q96AC6 838 aa12.44□□□□□ -0.42
Retrieved 100 of 20,778 RNA–protein pairs in 17.4 ms