RNA–Protein interactions for RNA: ENST00000470076.1

COL7A1-208, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 2

Gene COL7A1, Length 651 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-208ENST00000470076 SEPT12Q8IYM1 358 aa25.33■■□□□ 1.65
COL7A1-208ENST00000470076 NRAPQ86VF7 1730 aa25.32■■□□□ 1.64
COL7A1-208ENST00000470076 CRYBG1Q9Y4K1 1723 aa25.32■■□□□ 1.64
COL7A1-208ENST00000470076 NBPF1Q3BBV0 1214 aa25.3■■□□□ 1.64
COL7A1-208ENST00000470076 BTG4Q9NY30 223 aa25.3■■□□□ 1.64
COL7A1-208ENST00000470076 TOPAZ1Q8N9V7 1692 aa25.29■■□□□ 1.64
COL7A1-208ENST00000470076 CCDC61Q9Y6R9 512 aa25.29■■□□□ 1.64
COL7A1-208ENST00000470076 BLMP54132 1417 aaPredicted RBP25.29■■□□□ 1.64
COL7A1-208ENST00000470076 POLR3AO14802 1390 aaPredicted RBP25.28■■□□□ 1.64
COL7A1-208ENST00000470076 PLEKHG3A1L390 1219 aa25.25■■□□□ 1.63
COL7A1-208ENST00000470076 KRT27Q7Z3Y8 459 aa25.25■■□□□ 1.63
COL7A1-208ENST00000470076 PRDM11Q9NQV5 511 aa25.25■■□□□ 1.63
COL7A1-208ENST00000470076 ZRANB1Q9UGI0 708 aa25.25■■□□□ 1.63
COL7A1-208ENST00000470076 ACEP12821 1306 aa25.25■■□□□ 1.63
COL7A1-208ENST00000470076 CENPJQ9HC77 1338 aaPredicted RBP25.24■■□□□ 1.63
COL7A1-208ENST00000470076 NBPF8Q3BBV2 869 aa25.24■■□□□ 1.63
COL7A1-208ENST00000470076 SRCAPQ6ZRS2 3230 aa25.23■■□□□ 1.63
COL7A1-208ENST00000470076 PHRF1Q9P1Y6 1649 aaKnown RBP25.23■■□□□ 1.63
COL7A1-208ENST00000470076 A0A0G2JS52 829 aa25.22■■□□□ 1.63
COL7A1-208ENST00000470076 MYT1Q01538 1121 aa25.22■■□□□ 1.63
COL7A1-208ENST00000470076 SF3B2Q13435 895 aaKnown RBP25.21■■□□□ 1.63
COL7A1-208ENST00000470076 FAM98CQ17RN3 349 aaKnown RBP25.21■■□□□ 1.63
COL7A1-208ENST00000470076 L3MBTL2Q969R5 705 aa25.21■■□□□ 1.63
COL7A1-208ENST00000470076 SPATA31A5Q5VU36 1347 aa25.2■■□□□ 1.62
COL7A1-208ENST00000470076 SPATA31A7Q8IWB4 1347 aa25.2■■□□□ 1.62
COL7A1-208ENST00000470076 SRPK2P78362 688 aaKnown RBP25.2■■□□□ 1.62
COL7A1-208ENST00000470076 KIAA0232Q92628 1395 aa25.19■■□□□ 1.62
COL7A1-208ENST00000470076 QRICH2Q9H0J4 1663 aa25.19■■□□□ 1.62
COL7A1-208ENST00000470076 NUTM2GQ5VZR2 741 aa25.17■■□□□ 1.62
COL7A1-208ENST00000470076 PPIP5K1Q6PFW1 1433 aa25.17■■□□□ 1.62
COL7A1-208ENST00000470076 ABTB2Q8N961 1025 aa25.16■■□□□ 1.62
COL7A1-208ENST00000470076 ZC3H6P61129 1189 aaKnown RBP25.15■■□□□ 1.62
COL7A1-208ENST00000470076 CHRNA2Q15822 529 aa25.14■■□□□ 1.62
COL7A1-208ENST00000470076 DEFB132Q7Z7B7 95 aa25.14■■□□□ 1.62
COL7A1-208ENST00000470076 SIN3AQ96ST3 1273 aa25.14■■□□□ 1.62
COL7A1-208ENST00000470076 CABP2Q9NPB3 220 aa25.14■■□□□ 1.62
COL7A1-208ENST00000470076 TRPM1Q7Z4N2 1603 aa25.14■■□□□ 1.61
COL7A1-208ENST00000470076 BRD4O60885 1362 aaPredicted RBP25.14■■□□□ 1.61
COL7A1-208ENST00000470076 THSD7AQ9UPZ6 1657 aa25.13■■□□□ 1.61
COL7A1-208ENST00000470076 NRKQ7Z2Y5 1582 aa25.13■■□□□ 1.61
COL7A1-208ENST00000470076 USP19O94966 1318 aa25.12■■□□□ 1.61
COL7A1-208ENST00000470076 SPATA31A1Q5TZJ5 1347 aa25.12■■□□□ 1.61
COL7A1-208ENST00000470076 NLRP13Q86W25 1043 aa25.11■■□□□ 1.61
COL7A1-208ENST00000470076 CPDO75976 1380 aa25.1■■□□□ 1.61
COL7A1-208ENST00000470076 STRN4Q9NRL3 753 aa25.1■■□□□ 1.61
COL7A1-208ENST00000470076 NEUROD1Q13562 356 aa25.09■■□□□ 1.61
COL7A1-208ENST00000470076 BAG6P46379 1132 aa25.08■■□□□ 1.61
COL7A1-208ENST00000470076 CABP1Q9NZU7 370 aa25.08■■□□□ 1.61
COL7A1-208ENST00000470076 EVC2Q86UK5 1308 aa25.08■■□□□ 1.6
COL7A1-208ENST00000470076 ROCK2O75116 1388 aaKnown RBP25.07■■□□□ 1.6
COL7A1-208ENST00000470076 USP6P35125 1406 aa25.06■■□□□ 1.6
COL7A1-208ENST00000470076 SSH2Q76I76 1423 aa25.06■■□□□ 1.6
COL7A1-208ENST00000470076 EVA1CP58658 441 aa25.06■■□□□ 1.6
COL7A1-208ENST00000470076 RGPD1P0DJD0 1748 aa25.06■■□□□ 1.6
COL7A1-208ENST00000470076 LMO7Q8WWI1 1683 aa25.05■■□□□ 1.6
COL7A1-208ENST00000470076 CAMTA1Q9Y6Y1 1673 aa25.05■■□□□ 1.6
COL7A1-208ENST00000470076 GCP02774 474 aa25.05■■□□□ 1.6
COL7A1-208ENST00000470076 FAM182BQ5T319 152 aa25.03■■□□□ 1.6
COL7A1-208ENST00000470076 BARGINQ6ZT62 677 aa25.02■■□□□ 1.6
COL7A1-208ENST00000470076 USP35Q9P2H5 1018 aa25.01■■□□□ 1.59
COL7A1-208ENST00000470076 NLRP6P59044 892 aa25■■□□□ 1.59
COL7A1-208ENST00000470076 LARP1Q6PKG0 1096 aaKnown RBP24.99■■□□□ 1.59
COL7A1-208ENST00000470076 SLIT3O75094 1523 aa24.98■■□□□ 1.59
COL7A1-208ENST00000470076 FAM196AQ6ZSG2 479 aa24.98■■□□□ 1.59
COL7A1-208ENST00000470076 TCP11L2Q8N4U5 519 aa24.98■■□□□ 1.59
COL7A1-208ENST00000470076 TNS1Q9HBL0 1735 aaKnown RBP24.98■■□□□ 1.59
COL7A1-208ENST00000470076 DISP2A7MBM2 1401 aa24.97■■□□□ 1.59
COL7A1-208ENST00000470076 ZNF692Q9BU19 519 aaPredicted RBP24.97■■□□□ 1.59
COL7A1-208ENST00000470076 THRAP3Q9Y2W1 955 aaKnown RBP24.97■■□□□ 1.59
COL7A1-208ENST00000470076 COL5A2P05997 1499 aaPredicted RBP24.96■■□□□ 1.59
COL7A1-208ENST00000470076 EN1Q05925 392 aaPredicted RBP24.96■■□□□ 1.59
COL7A1-208ENST00000470076 PIK3C2AO00443 1686 aa24.96■■□□□ 1.59
COL7A1-208ENST00000470076 PDE3BQ13370 1112 aa24.95■■□□□ 1.58
COL7A1-208ENST00000470076 AKAP12Q02952 1782 aa24.95■■□□□ 1.58
COL7A1-208ENST00000470076 AATKQ6ZMQ8 1374 aa24.94■■□□□ 1.58
COL7A1-208ENST00000470076 SBNO2Q9Y2G9 1366 aa24.93■■□□□ 1.58
COL7A1-208ENST00000470076 CRB1P82279 1406 aa24.92■■□□□ 1.58
COL7A1-208ENST00000470076 TTC21BQ7Z4L5 1316 aa24.91■■□□□ 1.58
COL7A1-208ENST00000470076 ZBTB7CA1YPR0 619 aa24.91■■□□□ 1.58
COL7A1-208ENST00000470076 TRIM37O94972 964 aa24.91■■□□□ 1.58
COL7A1-208ENST00000470076 TTC21AQ8NDW8 1320 aa24.9■■□□□ 1.58
COL7A1-208ENST00000470076 PARP4Q9UKK3 1724 aaKnown RBP24.9■■□□□ 1.58
COL7A1-208ENST00000470076 CPSF1Q10570 1443 aaKnown RBP24.9■■□□□ 1.58
COL7A1-208ENST00000470076 KCNH5Q8NCM2 988 aa24.89■■□□□ 1.58
COL7A1-208ENST00000470076 CARD11Q9BXL7 1154 aa24.89■■□□□ 1.58
COL7A1-208ENST00000470076 COL18A1P39060 1754 aa24.89■■□□□ 1.57
COL7A1-208ENST00000470076 LRP5O75197 1615 aa24.88■■□□□ 1.57
COL7A1-208ENST00000470076 PSDA5PKW4 1024 aaPredicted RBP24.88■■□□□ 1.57
COL7A1-208ENST00000470076 TONSLQ96HA7 1378 aa24.88■■□□□ 1.57
COL7A1-208ENST00000470076 KTN1Q86UP2 1357 aaKnown RBP24.87■■□□□ 1.57
COL7A1-208ENST00000470076 PARD3Q8TEW0 1356 aa24.87■■□□□ 1.57
COL7A1-208ENST00000470076 APBA3O96018 575 aa24.86■■□□□ 1.57
COL7A1-208ENST00000470076 EZH2Q15910 746 aaKnown RBP24.86■■□□□ 1.57
COL7A1-208ENST00000470076 CAMKK2Q96RR4 588 aa24.86■■□□□ 1.57
COL7A1-208ENST00000470076 C11orf95C9JLR9 678 aaPredicted RBP24.85■■□□□ 1.57
COL7A1-208ENST00000470076 ARHGEF25Q86VW2 580 aa24.85■■□□□ 1.57
COL7A1-208ENST00000470076 MON2Q7Z3U7 1717 aa24.85■■□□□ 1.57
COL7A1-208ENST00000470076 TOM1L2Q6ZVM7 507 aa24.84■■□□□ 1.57
COL7A1-208ENST00000470076 AXIN2Q9Y2T1 843 aa24.83■■□□□ 1.57
COL7A1-208ENST00000470076 WDR17Q8IZU2 1322 aa24.83■■□□□ 1.56
Retrieved 100 of 20,778 RNA–protein pairs in 64.3 ms