RNA–Protein interactions for RNA: ENST00000469802.5

COL9A3-208, Transcript of collagen type IX alpha 3 chain, humanhuman

TSL 2

Gene COL9A3, Length 680 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL9A3-208ENST00000469802 CDK19Q9BWU1 502 aa23.57■■□□□ 1.36
COL9A3-208ENST00000469802 NGDNQ8NEJ9 315 aaKnown RBP23.56■■□□□ 1.36
COL9A3-208ENST00000469802 SIN3AQ96ST3 1273 aa23.56■■□□□ 1.36
COL9A3-208ENST00000469802 CENPJQ9HC77 1338 aaPredicted RBP23.55■■□□□ 1.36
COL9A3-208ENST00000469802 PLEKHG5O94827 1062 aa23.52■■□□□ 1.36
COL9A3-208ENST00000469802 VPS72Q15906 364 aa23.52■■□□□ 1.36
COL9A3-208ENST00000469802 CCDC61Q9Y6R9 512 aa23.52■■□□□ 1.36
COL9A3-208ENST00000469802 NRKQ7Z2Y5 1582 aa23.52■■□□□ 1.36
COL9A3-208ENST00000469802 FAM83GA6ND36 823 aa23.51■■□□□ 1.35
COL9A3-208ENST00000469802 PLEKHG3A1L390 1219 aa23.5■■□□□ 1.35
COL9A3-208ENST00000469802 ACEP12821 1306 aa23.5■■□□□ 1.35
COL9A3-208ENST00000469802 PPIP5K1Q6PFW1 1433 aa23.49■■□□□ 1.35
COL9A3-208ENST00000469802 PAK3O75914 559 aaPredicted RBP23.47■■□□□ 1.35
COL9A3-208ENST00000469802 NBPF8Q3BBV2 869 aa23.46■■□□□ 1.35
COL9A3-208ENST00000469802 AKAP12Q02952 1782 aa23.45■■□□□ 1.34
COL9A3-208ENST00000469802 THSD7AQ9UPZ6 1657 aa23.45■■□□□ 1.34
COL9A3-208ENST00000469802 ROCK2O75116 1388 aaKnown RBP23.45■■□□□ 1.34
COL9A3-208ENST00000469802 NEUROD1Q13562 356 aa23.45■■□□□ 1.34
COL9A3-208ENST00000469802 LMO7Q8WWI1 1683 aa23.44■■□□□ 1.34
COL9A3-208ENST00000469802 ONECUT3O60422 494 aaPredicted RBP23.44■■□□□ 1.34
COL9A3-208ENST00000469802 SRPK2P78362 688 aaKnown RBP23.43■■□□□ 1.34
COL9A3-208ENST00000469802 BTG4Q9NY30 223 aa23.43■■□□□ 1.34
COL9A3-208ENST00000469802 CABP2Q9NPB3 220 aa23.42■■□□□ 1.34
COL9A3-208ENST00000469802 PIK3C2AO00443 1686 aa23.41■■□□□ 1.34
COL9A3-208ENST00000469802 BRD4O60885 1362 aaPredicted RBP23.41■■□□□ 1.34
COL9A3-208ENST00000469802 KIAA0232Q92628 1395 aa23.41■■□□□ 1.34
COL9A3-208ENST00000469802 SEPT12Q8IYM1 358 aa23.41■■□□□ 1.34
COL9A3-208ENST00000469802 USP19O94966 1318 aa23.4■■□□□ 1.34
COL9A3-208ENST00000469802 PRDM11Q9NQV5 511 aa23.4■■□□□ 1.34
COL9A3-208ENST00000469802 USP6P35125 1406 aa23.4■■□□□ 1.34
COL9A3-208ENST00000469802 CCDC125Q86Z20 511 aa23.38■■□□□ 1.33
COL9A3-208ENST00000469802 CCDC9Q9Y3X0 531 aaKnown RBP23.38■■□□□ 1.33
COL9A3-208ENST00000469802 BLMP54132 1417 aaPredicted RBP23.37■■□□□ 1.33
COL9A3-208ENST00000469802 SSH2Q76I76 1423 aa23.37■■□□□ 1.33
COL9A3-208ENST00000469802 SLIT3O75094 1523 aa23.37■■□□□ 1.33
COL9A3-208ENST00000469802 CPDO75976 1380 aa23.37■■□□□ 1.33
COL9A3-208ENST00000469802 SBNO2Q9Y2G9 1366 aa23.37■■□□□ 1.33
COL9A3-208ENST00000469802 MON2Q7Z3U7 1717 aa23.36■■□□□ 1.33
COL9A3-208ENST00000469802 SPATA31A5Q5VU36 1347 aa23.36■■□□□ 1.33
COL9A3-208ENST00000469802 EVC2Q86UK5 1308 aa23.36■■□□□ 1.33
COL9A3-208ENST00000469802 SPATA31A7Q8IWB4 1347 aa23.36■■□□□ 1.33
COL9A3-208ENST00000469802 NUTM2GQ5VZR2 741 aa23.36■■□□□ 1.33
COL9A3-208ENST00000469802 CAMTA1Q9Y6Y1 1673 aa23.35■■□□□ 1.33
COL9A3-208ENST00000469802 ABTB2Q8N961 1025 aa23.34■■□□□ 1.33
COL9A3-208ENST00000469802 CABP1Q9NZU7 370 aa23.33■■□□□ 1.33
COL9A3-208ENST00000469802 RGPD1P0DJD0 1748 aa23.33■■□□□ 1.32
COL9A3-208ENST00000469802 CHRNA2Q15822 529 aa23.32■■□□□ 1.32
COL9A3-208ENST00000469802 FAM98CQ17RN3 349 aaKnown RBP23.32■■□□□ 1.32
COL9A3-208ENST00000469802 KRT27Q7Z3Y8 459 aa23.32■■□□□ 1.32
COL9A3-208ENST00000469802 TONSLQ96HA7 1378 aa23.31■■□□□ 1.32
COL9A3-208ENST00000469802 ZC3H6P61129 1189 aaKnown RBP23.31■■□□□ 1.32
COL9A3-208ENST00000469802 TNS1Q9HBL0 1735 aaKnown RBP23.3■■□□□ 1.32
COL9A3-208ENST00000469802 COL18A1P39060 1754 aa23.3■■□□□ 1.32
COL9A3-208ENST00000469802 USP54Q70EL1 1684 aa23.3■■□□□ 1.32
COL9A3-208ENST00000469802 TRIM26Q12899 539 aaPredicted RBP23.3■■□□□ 1.32
COL9A3-208ENST00000469802 SPATA31A1Q5TZJ5 1347 aa23.3■■□□□ 1.32
COL9A3-208ENST00000469802 CPSF1Q10570 1443 aaKnown RBP23.29■■□□□ 1.32
COL9A3-208ENST00000469802 NLRP13Q86W25 1043 aa23.29■■□□□ 1.32
COL9A3-208ENST00000469802 COL5A2P05997 1499 aaPredicted RBP23.27■■□□□ 1.32
COL9A3-208ENST00000469802 WNK3Q9BYP7 1800 aa23.26■■□□□ 1.31
COL9A3-208ENST00000469802 PARP4Q9UKK3 1724 aaKnown RBP23.26■■□□□ 1.31
COL9A3-208ENST00000469802 GCP02774 474 aa23.26■■□□□ 1.31
COL9A3-208ENST00000469802 A0A0G2JS52 829 aa23.25■■□□□ 1.31
COL9A3-208ENST00000469802 MYT1Q01538 1121 aa23.25■■□□□ 1.31
COL9A3-208ENST00000469802 CARD11Q9BXL7 1154 aa23.25■■□□□ 1.31
COL9A3-208ENST00000469802 STRN4Q9NRL3 753 aa23.24■■□□□ 1.31
COL9A3-208ENST00000469802 RGPD5Q99666 1765 aa23.24■■□□□ 1.31
COL9A3-208ENST00000469802 CD163L1Q9NR16 1453 aa23.24■■□□□ 1.31
COL9A3-208ENST00000469802 NFAT5O94916 1531 aa23.23■■□□□ 1.31
COL9A3-208ENST00000469802 NLRP6P59044 892 aa23.21■■□□□ 1.31
COL9A3-208ENST00000469802 ZNF692Q9BU19 519 aaPredicted RBP23.21■■□□□ 1.31
COL9A3-208ENST00000469802 TTC21BQ7Z4L5 1316 aa23.21■■□□□ 1.31
COL9A3-208ENST00000469802 AATKQ6ZMQ8 1374 aa23.21■■□□□ 1.31
COL9A3-208ENST00000469802 TTC21AQ8NDW8 1320 aa23.2■■□□□ 1.3
COL9A3-208ENST00000469802 BARGINQ6ZT62 677 aa23.2■■□□□ 1.3
COL9A3-208ENST00000469802 DEFB132Q7Z7B7 95 aa23.2■■□□□ 1.3
COL9A3-208ENST00000469802 LARP1Q6PKG0 1096 aaKnown RBP23.19■■□□□ 1.3
COL9A3-208ENST00000469802 ABCC6O95255 1503 aa23.18■■□□□ 1.3
COL9A3-208ENST00000469802 DISP2A7MBM2 1401 aa23.18■■□□□ 1.3
COL9A3-208ENST00000469802 KTN1Q86UP2 1357 aaKnown RBP23.18■■□□□ 1.3
COL9A3-208ENST00000469802 ZRANB1Q9UGI0 708 aa23.18■■□□□ 1.3
COL9A3-208ENST00000469802 LRRC37A3O60309 1634 aa23.18■■□□□ 1.3
COL9A3-208ENST00000469802 CRB1P82279 1406 aa23.17■■□□□ 1.3
COL9A3-208ENST00000469802 EVA1CP58658 441 aa23.17■■□□□ 1.3
COL9A3-208ENST00000469802 SF3B2Q13435 895 aaKnown RBP23.17■■□□□ 1.3
COL9A3-208ENST00000469802 LTN1O94822 1766 aa23.16■■□□□ 1.3
COL9A3-208ENST00000469802 FAM182BQ5T319 152 aa23.15■■□□□ 1.3
COL9A3-208ENST00000469802 PEAK1Q9H792 1746 aa23.15■■□□□ 1.3
COL9A3-208ENST00000469802 TCP11L2Q8N4U5 519 aa23.14■■□□□ 1.29
COL9A3-208ENST00000469802 USP35Q9P2H5 1018 aa23.14■■□□□ 1.29
COL9A3-208ENST00000469802 THRAP3Q9Y2W1 955 aaKnown RBP23.14■■□□□ 1.29
COL9A3-208ENST00000469802 USP31Q70CQ4 1352 aa23.13■■□□□ 1.29
COL9A3-208ENST00000469802 SRCAPQ6ZRS2 3230 aa23.12■■□□□ 1.29
COL9A3-208ENST00000469802 PUS7Q96PZ0 661 aaKnown RBP23.12■■□□□ 1.29
COL9A3-208ENST00000469802 RREB1Q92766 1687 aa23.12■■□□□ 1.29
COL9A3-208ENST00000469802 SBF2Q86WG5 1849 aa23.11■■□□□ 1.29
COL9A3-208ENST00000469802 BAG6P46379 1132 aa23.11■■□□□ 1.29
COL9A3-208ENST00000469802 ARHGEF25Q86VW2 580 aa23.11■■□□□ 1.29
COL9A3-208ENST00000469802 KCNH5Q8NCM2 988 aa23.11■■□□□ 1.29
COL9A3-208ENST00000469802 TESK2Q96S53 571 aa23.11■■□□□ 1.29
Retrieved 100 of 20,778 RNA–protein pairs in 46.5 ms