RNA–Protein interactions for RNA: ENST00000469694.5

GPC1-208, Transcript of glypican 1, humanhuman

TSL 2

Gene GPC1, Length 2,862 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
GPC1-208ENST00000469694 NINLQ9Y2I6 1382 aa17.91■□□□□ 0.46
GPC1-208ENST00000469694 CRBNQ96SW2 442 aa17.91■□□□□ 0.46
GPC1-208ENST00000469694 NUDT16Q96DE0 195 aaKnown RBP17.9■□□□□ 0.46
GPC1-208ENST00000469694 INSRP06213 1382 aa17.9■□□□□ 0.46
GPC1-208ENST00000469694 NEUROD2Q15784 382 aa17.9■□□□□ 0.46
GPC1-208ENST00000469694 THEMISQ8N1K5 641 aaPredicted RBP17.9■□□□□ 0.46
GPC1-208ENST00000469694 PKNOX2Q96KN3 472 aa17.9■□□□□ 0.46
GPC1-208ENST00000469694 PTPRUQ92729 1446 aa17.89■□□□□ 0.45
GPC1-208ENST00000469694 RRP7AQ9Y3A4 280 aaKnown RBP17.89■□□□□ 0.45
GPC1-208ENST00000469694 USP32Q8NFA0 1604 aa17.88■□□□□ 0.45
GPC1-208ENST00000469694 SPINK5Q9NQ38 1064 aaPredicted RBP17.88■□□□□ 0.45
GPC1-208ENST00000469694 ZRANB1Q9UGI0 708 aa17.88■□□□□ 0.45
GPC1-208ENST00000469694 AMOTL2Q9Y2J4 779 aa17.88■□□□□ 0.45
GPC1-208ENST00000469694 DMRT2Q9Y5R5 561 aa17.88■□□□□ 0.45
GPC1-208ENST00000469694 PRR36Q9H6K5 1346 aa17.88■□□□□ 0.45
GPC1-208ENST00000469694 PPIP5K1Q6PFW1 1433 aa17.88■□□□□ 0.45
GPC1-208ENST00000469694 KDM2BQ8NHM5 1336 aa17.88■□□□□ 0.45
GPC1-208ENST00000469694 FAM161AQ3B820 660 aa17.87■□□□□ 0.45
GPC1-208ENST00000469694 TECPR2O15040 1411 aa17.87■□□□□ 0.45
GPC1-208ENST00000469694 NSD2O96028 1365 aa17.87■□□□□ 0.45
GPC1-208ENST00000469694 C8orf34Q49A92 452 aa17.86■□□□□ 0.45
GPC1-208ENST00000469694 FAM135BQ49AJ0 1406 aa17.86■□□□□ 0.45
GPC1-208ENST00000469694 ZNF521Q96K83 1311 aa17.86■□□□□ 0.45
GPC1-208ENST00000469694 NME9Q86XW9 330 aa17.85■□□□□ 0.45
GPC1-208ENST00000469694 CFAP53Q96M91 514 aa17.85■□□□□ 0.45
GPC1-208ENST00000469694 CCDC61Q9Y6R9 512 aa17.85■□□□□ 0.45
GPC1-208ENST00000469694 U2AF1L5P0DN76 240 aaPredicted RBP17.85■□□□□ 0.45
GPC1-208ENST00000469694 U2AF1Q01081 240 aaKnown RBP eCLIP17.85■□□□□ 0.45
GPC1-208ENST00000469694 C20orf194Q5TEA3 1177 aa17.85■□□□□ 0.45
GPC1-208ENST00000469694 RIMS1Q86UR5 1692 aaKnown RBP17.84■□□□□ 0.45
GPC1-208ENST00000469694 ARHGAP23Q9P227 1491 aa17.84■□□□□ 0.45
GPC1-208ENST00000469694 GOLGA2Q08379 1002 aa17.84■□□□□ 0.45
GPC1-208ENST00000469694 SLIT1O75093 1534 aa17.83■□□□□ 0.45
GPC1-208ENST00000469694 CPS1P31327 1500 aa17.83■□□□□ 0.45
GPC1-208ENST00000469694 MED14O60244 1454 aa17.83■□□□□ 0.45
GPC1-208ENST00000469694 U2SURPO15042 1029 aaKnown RBP17.83■□□□□ 0.45
GPC1-208ENST00000469694 DUSP27Q5VZP5 1158 aa17.83■□□□□ 0.45
GPC1-208ENST00000469694 SHPRHQ149N8 1683 aa17.83■□□□□ 0.44
GPC1-208ENST00000469694 CENPQQ7L2Z9 268 aaPredicted RBP17.83■□□□□ 0.44
GPC1-208ENST00000469694 SIRT1Q96EB6 747 aa17.83■□□□□ 0.44
GPC1-208ENST00000469694 RBM33Q96EV2 1170 aaKnown RBP17.83■□□□□ 0.44
GPC1-208ENST00000469694 RRAGDQ9NQL2 400 aaPredicted RBP17.82■□□□□ 0.44
GPC1-208ENST00000469694 GLIPR1L2Q4G1C9 344 aa17.82■□□□□ 0.44
GPC1-208ENST00000469694 TBX22Q9Y458 520 aa17.81■□□□□ 0.44
GPC1-208ENST00000469694 TCP11L2Q8N4U5 519 aa17.81■□□□□ 0.44
GPC1-208ENST00000469694 SIPA1L2Q9P2F8 1722 aaPredicted RBP17.81■□□□□ 0.44
GPC1-208ENST00000469694 ATP7BP35670 1465 aa17.8■□□□□ 0.44
GPC1-208ENST00000469694 KCNA6P17658 529 aa17.8■□□□□ 0.44
GPC1-208ENST00000469694 CPSF1Q10570 1443 aaKnown RBP17.8■□□□□ 0.44
GPC1-208ENST00000469694 KNDC1Q76NI1 1749 aa17.8■□□□□ 0.44
GPC1-208ENST00000469694 SLFN5Q08AF3 891 aa17.79■□□□□ 0.44
GPC1-208ENST00000469694 RUNDC1Q96C34 613 aa17.79■□□□□ 0.44
GPC1-208ENST00000469694 CEP170BQ9Y4F5 1589 aaPredicted RBP17.79■□□□□ 0.44
GPC1-208ENST00000469694 WWC1Q8IX03 1113 aa17.78■□□□□ 0.44
GPC1-208ENST00000469694 PMFBP1Q8TBY8 1022 aa17.78■□□□□ 0.44
GPC1-208ENST00000469694 EMILIN1Q9Y6C2 1016 aa17.78■□□□□ 0.44
GPC1-208ENST00000469694 POLKQ9UBT6 870 aa17.77■□□□□ 0.44
GPC1-208ENST00000469694 ACEP12821 1306 aa17.76■□□□□ 0.43
GPC1-208ENST00000469694 RRS1Q15050 365 aaKnown RBP17.76■□□□□ 0.43
GPC1-208ENST00000469694 EDC4Q6P2E9 1401 aaKnown RBP17.75■□□□□ 0.43
GPC1-208ENST00000469694 L1TD1Q5T7N2 865 aaKnown RBP17.75■□□□□ 0.43
GPC1-208ENST00000469694 SOX12O15370 315 aa17.74■□□□□ 0.43
GPC1-208ENST00000469694 ANKLE2Q86XL3 938 aa17.73■□□□□ 0.43
GPC1-208ENST00000469694 DIAPH1O60610 1272 aaKnown RBP17.73■□□□□ 0.43
GPC1-208ENST00000469694 COL3A1P02461 1466 aaPredicted RBP17.73■□□□□ 0.43
GPC1-208ENST00000469694 CDC42BPGQ6DT37 1551 aa17.73■□□□□ 0.43
GPC1-208ENST00000469694 NKTRP30414 1462 aaKnown RBP17.73■□□□□ 0.43
GPC1-208ENST00000469694 KIF20BQ96Q89 1820 aa17.72■□□□□ 0.43
GPC1-208ENST00000469694 TRMT2AQ8IZ69 625 aaKnown RBP17.72■□□□□ 0.43
GPC1-208ENST00000469694 COG3Q96JB2 828 aa17.72■□□□□ 0.43
GPC1-208ENST00000469694 ZMYND15Q9H091 742 aa17.71■□□□□ 0.43
GPC1-208ENST00000469694 ANKRD26Q9UPS8 1709 aa17.71■□□□□ 0.43
GPC1-208ENST00000469694 ADAMTSL3P82987 1691 aa17.71■□□□□ 0.42
GPC1-208ENST00000469694 E9PSI1 815 aa17.7■□□□□ 0.42
GPC1-208ENST00000469694 IQSEC2Q5JU85 1478 aa17.7■□□□□ 0.42
GPC1-208ENST00000469694 HMOX1P09601 288 aa17.7■□□□□ 0.42
GPC1-208ENST00000469694 PLEKHF1Q96S99 279 aa17.7■□□□□ 0.42
GPC1-208ENST00000469694 ZNF692Q9BU19 519 aaPredicted RBP17.7■□□□□ 0.42
GPC1-208ENST00000469694 BCAR3O75815 825 aa17.69■□□□□ 0.42
GPC1-208ENST00000469694 VSIG10Q8N0Z9 540 aa17.69■□□□□ 0.42
GPC1-208ENST00000469694 TTC21BQ7Z4L5 1316 aa17.69■□□□□ 0.42
GPC1-208ENST00000469694 PNPLA6Q8IY17 1366 aa17.69■□□□□ 0.42
GPC1-208ENST00000469694 RGS3P49796 1198 aa17.69■□□□□ 0.42
GPC1-208ENST00000469694 PTCH1Q13635 1447 aa17.69■□□□□ 0.42
GPC1-208ENST00000469694 PLEKHG3A1L390 1219 aa17.68■□□□□ 0.42
GPC1-208ENST00000469694 USP19O94966 1318 aa17.68■□□□□ 0.42
GPC1-208ENST00000469694 ADGRB2O60241 1585 aa17.68■□□□□ 0.42
GPC1-208ENST00000469694 NGDNQ8NEJ9 315 aaKnown RBP17.67■□□□□ 0.42
GPC1-208ENST00000469694 PHF23Q9BUL5 403 aaPredicted RBP17.67■□□□□ 0.42
GPC1-208ENST00000469694 MAPK8IP3Q9UPT6 1336 aa17.66■□□□□ 0.42
GPC1-208ENST00000469694 TMPOP42166 694 aaKnown RBP17.65■□□□□ 0.42
GPC1-208ENST00000469694 MON2Q7Z3U7 1717 aa17.65■□□□□ 0.42
GPC1-208ENST00000469694 RRP9O43818 475 aaKnown RBP17.65■□□□□ 0.42
GPC1-208ENST00000469694 PRKAR2BP31323 418 aa17.65■□□□□ 0.42
GPC1-208ENST00000469694 CLCN1P35523 988 aa17.65■□□□□ 0.42
GPC1-208ENST00000469694 HSP90AA2PQ14568 343 aaPredicted RBP17.65■□□□□ 0.42
GPC1-208ENST00000469694 USP6P35125 1406 aa17.65■□□□□ 0.42
GPC1-208ENST00000469694 DIP2AQ14689 1571 aa17.65■□□□□ 0.42
GPC1-208ENST00000469694 NUTM2GQ5VZR2 741 aa17.65■□□□□ 0.42
GPC1-208ENST00000469694 NAP1L5Q96NT1 182 aaPredicted RBP17.65■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 21.3 ms