RNA–Protein interactions for RNA: ENST00000468937.2

SYNE1-218, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 2

Gene SYNE1, Length 688 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-218ENST00000468937 FBXO31Q5XUX0 539 aaPredicted RBP11.78□□□□□ -0.52
SYNE1-218ENST00000468937 MAP10Q9P2G4 905 aa11.78□□□□□ -0.52
SYNE1-218ENST00000468937 RC3H1Q5TC82 1133 aaKnown RBP11.76□□□□□ -0.53
SYNE1-218ENST00000468937 BAP1Q92560 729 aa11.76□□□□□ -0.53
SYNE1-218ENST00000468937 SKOR1P84550 965 aa11.75□□□□□ -0.53
SYNE1-218ENST00000468937 CYP4X1Q8N118 509 aa11.75□□□□□ -0.53
SYNE1-218ENST00000468937 SH3BP2P78314 561 aa11.74□□□□□ -0.53
SYNE1-218ENST00000468937 LINC01559Q495D7 138 aa11.74□□□□□ -0.53
SYNE1-218ENST00000468937 Q6ZNB5 142 aa11.74□□□□□ -0.53
SYNE1-218ENST00000468937 ZNF511Q8NB15 262 aa11.74□□□□□ -0.53
SYNE1-218ENST00000468937 EHBP1Q8NDI1 1231 aa11.73□□□□□ -0.53
SYNE1-218ENST00000468937 LRRN4Q8WUT4 740 aa11.73□□□□□ -0.53
SYNE1-218ENST00000468937 MRGPRX2Q96LB1 330 aa11.73□□□□□ -0.53
SYNE1-218ENST00000468937 USP17L8P0C7I0 530 aa11.72□□□□□ -0.53
SYNE1-218ENST00000468937 NBPF14Q5TI25 921 aa11.72□□□□□ -0.53
SYNE1-218ENST00000468937 TTC24A2A3L6 582 aaPredicted RBP11.71□□□□□ -0.53
SYNE1-218ENST00000468937 PNMA1Q8ND90 353 aa11.71□□□□□ -0.53
SYNE1-218ENST00000468937 SNIP1Q8TAD8 396 aaKnown RBP11.71□□□□□ -0.53
SYNE1-218ENST00000468937 GPKOWQ92917 476 aaPredicted RBP eCLIP11.71□□□□□ -0.53
SYNE1-218ENST00000468937 DGAT1O75907 488 aa11.7□□□□□ -0.54
SYNE1-218ENST00000468937 PKDCCQ504Y2 493 aa11.7□□□□□ -0.54
SYNE1-218ENST00000468937 TOR4AQ9NXH8 423 aa11.7□□□□□ -0.54
SYNE1-218ENST00000468937 VARSP26640 1264 aaKnown RBP11.69□□□□□ -0.54
SYNE1-218ENST00000468937 BPHLQ86WA6 291 aaPredicted RBP11.69□□□□□ -0.54
SYNE1-218ENST00000468937 BANK1Q8NDB2 785 aa11.69□□□□□ -0.54
SYNE1-218ENST00000468937 FAM187AA6NFU0 413 aa11.68□□□□□ -0.54
SYNE1-218ENST00000468937 AGERQ15109 404 aa11.68□□□□□ -0.54
SYNE1-218ENST00000468937 NR6A1Q15406 480 aa11.67□□□□□ -0.54
SYNE1-218ENST00000468937 ZC3H4Q9UPT8 1303 aaKnown RBP11.66□□□□□ -0.54
SYNE1-218ENST00000468937 FKBPLQ9UIM3 349 aa11.66□□□□□ -0.54
SYNE1-218ENST00000468937 FAM174AQ8TBP5 190 aa11.65□□□□□ -0.54
SYNE1-218ENST00000468937 SIAH2O43255 324 aa11.64□□□□□ -0.55
SYNE1-218ENST00000468937 TRAF7Q6Q0C0 670 aa11.64□□□□□ -0.55
SYNE1-218ENST00000468937 APBB1O00213 710 aa11.63□□□□□ -0.55
SYNE1-218ENST00000468937 PDXDC2PQ6P474 469 aa11.63□□□□□ -0.55
SYNE1-218ENST00000468937 FOXJ1Q92949 421 aa11.63□□□□□ -0.55
SYNE1-218ENST00000468937 MPNDQ8N594 471 aa11.62□□□□□ -0.55
SYNE1-218ENST00000468937 HMX1Q9NP08 348 aaPredicted RBP11.62□□□□□ -0.55
SYNE1-218ENST00000468937 SOCS7O14512 581 aa11.61□□□□□ -0.55
SYNE1-218ENST00000468937 ALDH1A1P00352 501 aa11.61□□□□□ -0.55
SYNE1-218ENST00000468937 SMPD1P17405 629 aa11.6□□□□□ -0.55
SYNE1-218ENST00000468937 SH3BP5LQ7L8J4 393 aa11.6□□□□□ -0.55
SYNE1-218ENST00000468937 WASF2Q9Y6W5 498 aa11.6□□□□□ -0.55
SYNE1-218ENST00000468937 J3QL48 77 aa11.59□□□□□ -0.55
SYNE1-218ENST00000468937 PTK2Q05397 1052 aa11.59□□□□□ -0.55
SYNE1-218ENST00000468937 TMEM132AQ24JP5 1023 aa11.59□□□□□ -0.55
SYNE1-218ENST00000468937 SH3RF1Q7Z6J0 888 aa11.59□□□□□ -0.55
SYNE1-218ENST00000468937 GPSM3Q9Y4H4 160 aa11.59□□□□□ -0.55
SYNE1-218ENST00000468937 AVPP01185 164 aa11.58□□□□□ -0.56
SYNE1-218ENST00000468937 EPS8L1Q8TE68 723 aa11.58□□□□□ -0.56
SYNE1-218ENST00000468937 ARHGAP9Q9BRR9 750 aa11.58□□□□□ -0.56
SYNE1-218ENST00000468937 MAGEB6P1A0A0J9YX57 407 aa11.57□□□□□ -0.56
SYNE1-218ENST00000468937 MYT1Q01538 1121 aa11.57□□□□□ -0.56
SYNE1-218ENST00000468937 TRIM34Q9BYJ4 488 aa11.57□□□□□ -0.56
SYNE1-218ENST00000468937 CTC1Q2NKJ3 1217 aa11.56□□□□□ -0.56
SYNE1-218ENST00000468937 C4orf48Q5BLP8 95 aa11.56□□□□□ -0.56
SYNE1-218ENST00000468937 ZBTB33Q86T24 672 aa11.55□□□□□ -0.56
SYNE1-218ENST00000468937 GJD4Q96KN9 370 aaPredicted RBP11.55□□□□□ -0.56
SYNE1-218ENST00000468937 CDK15Q96Q40 435 aa11.55□□□□□ -0.56
SYNE1-218ENST00000468937 C1QTNF2Q9BXJ5 285 aa11.55□□□□□ -0.56
SYNE1-218ENST00000468937 PRM3Q9NNZ6 103 aa11.55□□□□□ -0.56
SYNE1-218ENST00000468937 TLL2Q9Y6L7 1015 aa11.55□□□□□ -0.56
SYNE1-218ENST00000468937 ARID5BQ14865 1188 aa11.54□□□□□ -0.56
SYNE1-218ENST00000468937 TRMT44Q8IYL2 757 aaKnown RBP11.54□□□□□ -0.56
SYNE1-218ENST00000468937 CRIPAKQ8N1N5 446 aa11.54□□□□□ -0.56
SYNE1-218ENST00000468937 CARD14Q9BXL6 1004 aa11.54□□□□□ -0.56
SYNE1-218ENST00000468937 MTMR14Q8NCE2 650 aa11.53□□□□□ -0.56
SYNE1-218ENST00000468937 SNRKQ9NRH2 765 aa11.53□□□□□ -0.56
SYNE1-218ENST00000468937 AXIN1O15169 862 aa11.52□□□□□ -0.57
SYNE1-218ENST00000468937 ADH1CP00326 375 aa11.52□□□□□ -0.57
SYNE1-218ENST00000468937 SMCPP49901 116 aaPredicted RBP11.52□□□□□ -0.57
SYNE1-218ENST00000468937 CDV3Q9UKY7 258 aaKnown RBP11.52□□□□□ -0.57
SYNE1-218ENST00000468937 MAP4K5Q9Y4K4 846 aa11.52□□□□□ -0.57
SYNE1-218ENST00000468937 NDUFB9Q9Y6M9 179 aa11.52□□□□□ -0.57
SYNE1-218ENST00000468937 ERFEQ4G0M1 354 aa11.51□□□□□ -0.57
SYNE1-218ENST00000468937 HPS1Q92902 700 aa11.51□□□□□ -0.57
SYNE1-218ENST00000468937 NR5A1Q13285 461 aa11.5□□□□□ -0.57
SYNE1-218ENST00000468937 SLC10A4Q96EP9 437 aa11.5□□□□□ -0.57
SYNE1-218ENST00000468937 AAASQ9NRG9 546 aa11.5□□□□□ -0.57
SYNE1-218ENST00000468937 LCE2BO14633 110 aa11.49□□□□□ -0.57
SYNE1-218ENST00000468937 VASH1Q7L8A9 365 aaPredicted RBP11.49□□□□□ -0.57
SYNE1-218ENST00000468937 NNTQ13423 1086 aa11.48□□□□□ -0.57
SYNE1-218ENST00000468937 ADAM32Q8TC27 787 aa11.48□□□□□ -0.57
SYNE1-218ENST00000468937 ZBBXA8MT70 800 aa11.47□□□□□ -0.57
SYNE1-218ENST00000468937 ST8SIA5O15466 376 aa11.46□□□□□ -0.57
SYNE1-218ENST00000468937 GRM5P41594 1212 aa11.46□□□□□ -0.57
SYNE1-218ENST00000468937 ZNF592Q92610 1267 aa11.45□□□□□ -0.58
SYNE1-218ENST00000468937 OCSTAMPQ9BR26 566 aa11.45□□□□□ -0.58
SYNE1-218ENST00000468937 ZNF330Q9Y3S2 320 aaPredicted RBP11.45□□□□□ -0.58
SYNE1-218ENST00000468937 NBPF20Q3BBV1 942 aa11.44□□□□□ -0.58
SYNE1-218ENST00000468937 DZIP3Q86Y13 1208 aaKnown RBP11.44□□□□□ -0.58
SYNE1-218ENST00000468937 CAPN5O15484 640 aaPredicted RBP11.43□□□□□ -0.58
SYNE1-218ENST00000468937 FSHRP23945 695 aa11.43□□□□□ -0.58
SYNE1-218ENST00000468937 FLIIQ13045 1269 aa11.42□□□□□ -0.58
SYNE1-218ENST00000468937 NR1H3Q13133 447 aa11.42□□□□□ -0.58
SYNE1-218ENST00000468937 MCM6Q14566 821 aa11.42□□□□□ -0.58
SYNE1-218ENST00000468937 KCTD15Q96SI1 283 aaPredicted RBP11.42□□□□□ -0.58
SYNE1-218ENST00000468937 FBXO45P0C2W1 286 aa11.41□□□□□ -0.58
SYNE1-218ENST00000468937 WDR4P57081 412 aaKnown RBP11.41□□□□□ -0.58
SYNE1-218ENST00000468937 MCCD1P59942 119 aaPredicted RBP11.41□□□□□ -0.58
Retrieved 100 of 20,778 RNA–protein pairs in 30.9 ms