RNA–Protein interactions for RNA: ENST00000468654.1

SHANK1-206, Transcript of SH3 and multiple ankyrin repeat domains 1, humanhuman

TSL 3

Gene SHANK1, Length 668 nt, Biotype nonsense mediated decay.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHANK1-206ENST00000468654 NBPF1Q3BBV0 1214 aa30.52■■■□□ 2.48
SHANK1-206ENST00000468654 NGDNQ8NEJ9 315 aaKnown RBP30.51■■■□□ 2.47
SHANK1-206ENST00000468654 RGPD1P0DJD0 1748 aa30.5■■■□□ 2.47
SHANK1-206ENST00000468654 NRKQ7Z2Y5 1582 aa30.5■■■□□ 2.47
SHANK1-206ENST00000468654 NUDT16Q96DE0 195 aaKnown RBP30.5■■■□□ 2.47
SHANK1-206ENST00000468654 FAM83GA6ND36 823 aa30.49■■■□□ 2.47
SHANK1-206ENST00000468654 TNS1Q9HBL0 1735 aaKnown RBP30.48■■■□□ 2.47
SHANK1-206ENST00000468654 CCDC125Q86Z20 511 aa30.48■■■□□ 2.47
SHANK1-206ENST00000468654 SEPT12Q8IYM1 358 aa30.48■■■□□ 2.47
SHANK1-206ENST00000468654 CDK19Q9BWU1 502 aa30.48■■■□□ 2.47
SHANK1-206ENST00000468654 L3MBTL2Q969R5 705 aa30.45■■■□□ 2.47
SHANK1-206ENST00000468654 POLR3AO14802 1390 aaPredicted RBP30.44■■■□□ 2.46
SHANK1-206ENST00000468654 CCDC9Q9Y3X0 531 aaKnown RBP30.44■■■□□ 2.46
SHANK1-206ENST00000468654 ONECUT3O60422 494 aaPredicted RBP30.43■■■□□ 2.46
SHANK1-206ENST00000468654 TRPM1Q7Z4N2 1603 aa30.43■■■□□ 2.46
SHANK1-206ENST00000468654 CENPJQ9HC77 1338 aaPredicted RBP30.42■■■□□ 2.46
SHANK1-206ENST00000468654 BTG4Q9NY30 223 aa30.41■■■□□ 2.46
SHANK1-206ENST00000468654 LMO7Q8WWI1 1683 aa30.41■■■□□ 2.46
SHANK1-206ENST00000468654 PAK3O75914 559 aaPredicted RBP30.4■■■□□ 2.46
SHANK1-206ENST00000468654 SIN3AQ96ST3 1273 aa30.4■■■□□ 2.46
SHANK1-206ENST00000468654 CCDC61Q9Y6R9 512 aa30.4■■■□□ 2.46
SHANK1-206ENST00000468654 ZRANB1Q9UGI0 708 aa30.39■■■□□ 2.46
SHANK1-206ENST00000468654 PLEKHG3A1L390 1219 aa30.37■■■□□ 2.45
SHANK1-206ENST00000468654 KRT27Q7Z3Y8 459 aa30.37■■■□□ 2.45
SHANK1-206ENST00000468654 ACEP12821 1306 aa30.37■■■□□ 2.45
SHANK1-206ENST00000468654 DEFB132Q7Z7B7 95 aa30.35■■■□□ 2.45
SHANK1-206ENST00000468654 KIAA0232Q92628 1395 aa30.35■■■□□ 2.45
SHANK1-206ENST00000468654 LRP5O75197 1615 aa30.35■■■□□ 2.45
SHANK1-206ENST00000468654 FAM98CQ17RN3 349 aaKnown RBP30.34■■■□□ 2.45
SHANK1-206ENST00000468654 SPATA31A5Q5VU36 1347 aa30.33■■■□□ 2.45
SHANK1-206ENST00000468654 SPATA31A7Q8IWB4 1347 aa30.33■■■□□ 2.45
SHANK1-206ENST00000468654 NBPF8Q3BBV2 869 aa30.33■■■□□ 2.45
SHANK1-206ENST00000468654 A0A0G2JS52 829 aa30.32■■■□□ 2.44
SHANK1-206ENST00000468654 MYT1Q01538 1121 aa30.32■■■□□ 2.44
SHANK1-206ENST00000468654 PRDM11Q9NQV5 511 aa30.32■■■□□ 2.44
SHANK1-206ENST00000468654 PPIP5K1Q6PFW1 1433 aa30.31■■■□□ 2.44
SHANK1-206ENST00000468654 AKAP12Q02952 1782 aa30.31■■■□□ 2.44
SHANK1-206ENST00000468654 SRPK2P78362 688 aaKnown RBP30.31■■■□□ 2.44
SHANK1-206ENST00000468654 NEUROD1Q13562 356 aa30.31■■■□□ 2.44
SHANK1-206ENST00000468654 WNK3Q9BYP7 1800 aa30.3■■■□□ 2.44
SHANK1-206ENST00000468654 PIK3C2AO00443 1686 aa30.29■■■□□ 2.44
SHANK1-206ENST00000468654 CABP2Q9NPB3 220 aa30.28■■■□□ 2.44
SHANK1-206ENST00000468654 ROCK2O75116 1388 aaKnown RBP30.28■■■□□ 2.44
SHANK1-206ENST00000468654 CAMTA1Q9Y6Y1 1673 aa30.27■■■□□ 2.44
SHANK1-206ENST00000468654 SF3B2Q13435 895 aaKnown RBP30.26■■■□□ 2.43
SHANK1-206ENST00000468654 PARP4Q9UKK3 1724 aaKnown RBP30.25■■■□□ 2.43
SHANK1-206ENST00000468654 CHRNA2Q15822 529 aa30.25■■■□□ 2.43
SHANK1-206ENST00000468654 NUTM2GQ5VZR2 741 aa30.25■■■□□ 2.43
SHANK1-206ENST00000468654 RREB1Q92766 1687 aa30.23■■■□□ 2.43
SHANK1-206ENST00000468654 USP19O94966 1318 aa30.23■■■□□ 2.43
SHANK1-206ENST00000468654 BRD4O60885 1362 aaPredicted RBP30.23■■■□□ 2.43
SHANK1-206ENST00000468654 SPATA31A1Q5TZJ5 1347 aa30.22■■■□□ 2.43
SHANK1-206ENST00000468654 SSH2Q76I76 1423 aa30.22■■■□□ 2.43
SHANK1-206ENST00000468654 ABTB2Q8N961 1025 aa30.21■■■□□ 2.43
SHANK1-206ENST00000468654 SLIT3O75094 1523 aa30.21■■■□□ 2.43
SHANK1-206ENST00000468654 RGPD5Q99666 1765 aa30.2■■■□□ 2.43
SHANK1-206ENST00000468654 ZC3H6P61129 1189 aaKnown RBP30.2■■■□□ 2.43
SHANK1-206ENST00000468654 FAM182BQ5T319 152 aa30.2■■■□□ 2.43
SHANK1-206ENST00000468654 COL18A1P39060 1754 aa30.2■■■□□ 2.42
SHANK1-206ENST00000468654 DISP2A7MBM2 1401 aa30.2■■■□□ 2.42
SHANK1-206ENST00000468654 USP6P35125 1406 aa30.2■■■□□ 2.42
SHANK1-206ENST00000468654 EVC2Q86UK5 1308 aa30.2■■■□□ 2.42
SHANK1-206ENST00000468654 CPDO75976 1380 aa30.19■■■□□ 2.42
SHANK1-206ENST00000468654 NUP188Q5SRE5 1749 aa30.19■■■□□ 2.42
SHANK1-206ENST00000468654 MON2Q7Z3U7 1717 aa30.17■■■□□ 2.42
SHANK1-206ENST00000468654 STRN4Q9NRL3 753 aa30.17■■■□□ 2.42
SHANK1-206ENST00000468654 CABP1Q9NZU7 370 aa30.17■■■□□ 2.42
SHANK1-206ENST00000468654 LRRC37A3O60309 1634 aa30.16■■■□□ 2.42
SHANK1-206ENST00000468654 SBF2Q86WG5 1849 aa30.16■■■□□ 2.42
SHANK1-206ENST00000468654 COL5A2P05997 1499 aaPredicted RBP30.15■■■□□ 2.42
SHANK1-206ENST00000468654 BAG6P46379 1132 aa30.15■■■□□ 2.42
SHANK1-206ENST00000468654 NLRP13Q86W25 1043 aa30.14■■■□□ 2.42
SHANK1-206ENST00000468654 PEAK1Q9H792 1746 aa30.13■■■□□ 2.41
SHANK1-206ENST00000468654 SBNO2Q9Y2G9 1366 aa30.1■■■□□ 2.41
SHANK1-206ENST00000468654 GCP02774 474 aa30.09■■■□□ 2.41
SHANK1-206ENST00000468654 USP54Q70EL1 1684 aa30.08■■■□□ 2.41
SHANK1-206ENST00000468654 TONSLQ96HA7 1378 aa30.08■■■□□ 2.41
SHANK1-206ENST00000468654 EN1Q05925 392 aaPredicted RBP30.07■■■□□ 2.4
SHANK1-206ENST00000468654 USP35Q9P2H5 1018 aa30.07■■■□□ 2.4
SHANK1-206ENST00000468654 RGPD3A6NKT7 1758 aaPredicted RBP30.07■■■□□ 2.4
SHANK1-206ENST00000468654 RGPD4Q7Z3J3 1758 aa30.07■■■□□ 2.4
SHANK1-206ENST00000468654 LARP1Q6PKG0 1096 aaKnown RBP30.06■■■□□ 2.4
SHANK1-206ENST00000468654 PSDA5PKW4 1024 aaPredicted RBP30.05■■■□□ 2.4
SHANK1-206ENST00000468654 BARGINQ6ZT62 677 aa30.05■■■□□ 2.4
SHANK1-206ENST00000468654 CARD11Q9BXL7 1154 aa30.04■■■□□ 2.4
SHANK1-206ENST00000468654 NLRP6P59044 892 aa30.03■■■□□ 2.4
SHANK1-206ENST00000468654 CPSF1Q10570 1443 aaKnown RBP30.03■■■□□ 2.4
SHANK1-206ENST00000468654 LTN1O94822 1766 aa30.03■■■□□ 2.4
SHANK1-206ENST00000468654 EVA1CP58658 441 aa30.02■■■□□ 2.4
SHANK1-206ENST00000468654 CRB1P82279 1406 aa30.02■■■□□ 2.4
SHANK1-206ENST00000468654 TRIM26Q12899 539 aaPredicted RBP30.01■■■□□ 2.39
SHANK1-206ENST00000468654 ZNF692Q9BU19 519 aaPredicted RBP30.01■■■□□ 2.39
SHANK1-206ENST00000468654 NFAT5O94916 1531 aa30.01■■■□□ 2.39
SHANK1-206ENST00000468654 TTC21BQ7Z4L5 1316 aa29.99■■■□□ 2.39
SHANK1-206ENST00000468654 TRIM37O94972 964 aa29.99■■■□□ 2.39
SHANK1-206ENST00000468654 FAM196AQ6ZSG2 479 aa29.99■■■□□ 2.39
SHANK1-206ENST00000468654 TCP11L2Q8N4U5 519 aa29.99■■■□□ 2.39
SHANK1-206ENST00000468654 AATKQ6ZMQ8 1374 aa29.99■■■□□ 2.39
SHANK1-206ENST00000468654 EZH2Q15910 746 aaKnown RBP29.97■■■□□ 2.39
SHANK1-206ENST00000468654 TTC21AQ8NDW8 1320 aa29.96■■■□□ 2.39
Retrieved 100 of 20,778 RNA–protein pairs in 28.9 ms