RNA–Protein interactions for RNA: ENST00000468143.1

CDHR3-205, Transcript of cadherin related family member 3, humanhuman

TSL 4

Gene CDHR3, Length 575 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDHR3-205ENST00000468143 RALGAPBQ86X10 1494 aa16.37■□□□□ 0.21
CDHR3-205ENST00000468143 ATRNO75882 1429 aa16.36■□□□□ 0.21
CDHR3-205ENST00000468143 ITSN1Q15811 1721 aa16.36■□□□□ 0.21
CDHR3-205ENST00000468143 ABTB2Q8N961 1025 aa16.36■□□□□ 0.21
CDHR3-205ENST00000468143 GJD4Q96KN9 370 aaPredicted RBP16.36■□□□□ 0.21
CDHR3-205ENST00000468143 TOPAZ1Q8N9V7 1692 aa16.36■□□□□ 0.21
CDHR3-205ENST00000468143 RGS12O14924 1447 aa16.36■□□□□ 0.21
CDHR3-205ENST00000468143 SLIT2O94813 1529 aa16.35■□□□□ 0.21
CDHR3-205ENST00000468143 ALS2Q96Q42 1657 aa16.34■□□□□ 0.21
CDHR3-205ENST00000468143 ZC3H6P61129 1189 aaKnown RBP16.34■□□□□ 0.21
CDHR3-205ENST00000468143 CCER1Q8TC90 406 aaPredicted RBP16.34■□□□□ 0.21
CDHR3-205ENST00000468143 CCDC9Q9Y3X0 531 aaKnown RBP16.34■□□□□ 0.21
CDHR3-205ENST00000468143 CDK12Q9NYV4 1490 aaPredicted RBP16.34■□□□□ 0.21
CDHR3-205ENST00000468143 MARF1Q9Y4F3 1742 aaKnown RBP16.33■□□□□ 0.21
CDHR3-205ENST00000468143 BTG4Q9NY30 223 aa16.33■□□□□ 0.2
CDHR3-205ENST00000468143 ST20-MTHFSA0A0A6YYL1 179 aa16.32■□□□□ 0.2
CDHR3-205ENST00000468143 CHRNA2Q15822 529 aa16.32■□□□□ 0.2
CDHR3-205ENST00000468143 TMC1Q8TDI8 760 aa16.31■□□□□ 0.2
CDHR3-205ENST00000468143 UPF1Q92900 1129 aaKnown RBP eCLIP16.31■□□□□ 0.2
CDHR3-205ENST00000468143 PRDM11Q9NQV5 511 aa16.31■□□□□ 0.2
CDHR3-205ENST00000468143 ABCA3Q99758 1704 aa16.31■□□□□ 0.2
CDHR3-205ENST00000468143 VPS72Q15906 364 aa16.3■□□□□ 0.2
CDHR3-205ENST00000468143 NLRP13Q86W25 1043 aa16.3■□□□□ 0.2
CDHR3-205ENST00000468143 USP6P35125 1406 aa16.29■□□□□ 0.2
CDHR3-205ENST00000468143 KIAA0232Q92628 1395 aa16.29■□□□□ 0.2
CDHR3-205ENST00000468143 CLSPNQ9HAW4 1339 aa16.29■□□□□ 0.2
CDHR3-205ENST00000468143 NLRP6P59044 892 aa16.29■□□□□ 0.2
CDHR3-205ENST00000468143 ZNF692Q9BU19 519 aaPredicted RBP16.29■□□□□ 0.2
CDHR3-205ENST00000468143 ATAD2Q6PL18 1390 aa16.28■□□□□ 0.2
CDHR3-205ENST00000468143 SBNO2Q9Y2G9 1366 aa16.28■□□□□ 0.2
CDHR3-205ENST00000468143 TESK2Q96S53 571 aa16.28■□□□□ 0.2
CDHR3-205ENST00000468143 SLC12A5Q9H2X9 1139 aa16.28■□□□□ 0.2
CDHR3-205ENST00000468143 TIMELESSQ9UNS1 1208 aa16.28■□□□□ 0.2
CDHR3-205ENST00000468143 ZBTB7CA1YPR0 619 aa16.27■□□□□ 0.2
CDHR3-205ENST00000468143 GCP02774 474 aa16.27■□□□□ 0.2
CDHR3-205ENST00000468143 TTC21BQ7Z4L5 1316 aa16.26■□□□□ 0.19
CDHR3-205ENST00000468143 STRN4Q9NRL3 753 aa16.26■□□□□ 0.19
CDHR3-205ENST00000468143 PLCH1Q4KWH8 1693 aa16.26■□□□□ 0.19
CDHR3-205ENST00000468143 SSH2Q76I76 1423 aa16.26■□□□□ 0.19
CDHR3-205ENST00000468143 BRD4O60885 1362 aaPredicted RBP16.26■□□□□ 0.19
CDHR3-205ENST00000468143 KTN1Q86UP2 1357 aaKnown RBP16.26■□□□□ 0.19
CDHR3-205ENST00000468143 USP19O94966 1318 aa16.25■□□□□ 0.19
CDHR3-205ENST00000468143 SUGP2Q8IX01 1082 aaKnown RBP eCLIP16.25■□□□□ 0.19
CDHR3-205ENST00000468143 SEPT12Q8IYM1 358 aa16.25■□□□□ 0.19
CDHR3-205ENST00000468143 GLI3P10071 1580 aa16.25■□□□□ 0.19
CDHR3-205ENST00000468143 CRYBG1Q9Y4K1 1723 aa16.25■□□□□ 0.19
CDHR3-205ENST00000468143 A0A0G2JS52 829 aa16.24■□□□□ 0.19
CDHR3-205ENST00000468143 SOX12O15370 315 aa16.24■□□□□ 0.19
CDHR3-205ENST00000468143 EVA1CP58658 441 aa16.24■□□□□ 0.19
CDHR3-205ENST00000468143 MYT1Q01538 1121 aa16.24■□□□□ 0.19
CDHR3-205ENST00000468143 CPSF1Q10570 1443 aaKnown RBP16.24■□□□□ 0.19
CDHR3-205ENST00000468143 USP47Q96K76 1375 aa16.24■□□□□ 0.19
CDHR3-205ENST00000468143 TNKS1BP1Q9C0C2 1729 aaKnown RBP16.23■□□□□ 0.19
CDHR3-205ENST00000468143 FAM98CQ17RN3 349 aaKnown RBP16.23■□□□□ 0.19
CDHR3-205ENST00000468143 ZRANB1Q9UGI0 708 aa16.23■□□□□ 0.19
CDHR3-205ENST00000468143 COL14A1Q05707 1796 aaKnown RBP16.23■□□□□ 0.19
CDHR3-205ENST00000468143 PHRF1Q9P1Y6 1649 aaKnown RBP16.23■□□□□ 0.19
CDHR3-205ENST00000468143 HDGFL2Q7Z4V5 671 aaPredicted RBP16.22■□□□□ 0.19
CDHR3-205ENST00000468143 NWD2Q9ULI1 1742 aa16.22■□□□□ 0.19
CDHR3-205ENST00000468143 SPATA31A5Q5VU36 1347 aa16.21■□□□□ 0.19
CDHR3-205ENST00000468143 SPATA31A7Q8IWB4 1347 aa16.21■□□□□ 0.19
CDHR3-205ENST00000468143 ONECUT3O60422 494 aaPredicted RBP16.21■□□□□ 0.19
CDHR3-205ENST00000468143 PUS7Q96PZ0 661 aaKnown RBP16.21■□□□□ 0.19
CDHR3-205ENST00000468143 USP35Q9P2H5 1018 aa16.21■□□□□ 0.19
CDHR3-205ENST00000468143 TTC21AQ8NDW8 1320 aa16.2■□□□□ 0.18
CDHR3-205ENST00000468143 TMF1P82094 1093 aa16.2■□□□□ 0.18
CDHR3-205ENST00000468143 NME9Q86XW9 330 aa16.2■□□□□ 0.18
CDHR3-205ENST00000468143 CD163L1Q9NR16 1453 aa16.2■□□□□ 0.18
CDHR3-205ENST00000468143 NRKQ7Z2Y5 1582 aa16.2■□□□□ 0.18
CDHR3-205ENST00000468143 CPDO75976 1380 aa16.19■□□□□ 0.18
CDHR3-205ENST00000468143 LARP1Q6PKG0 1096 aaKnown RBP16.19■□□□□ 0.18
CDHR3-205ENST00000468143 TERF2IPQ9NYB0 399 aa16.19■□□□□ 0.18
CDHR3-205ENST00000468143 NRAPQ86VF7 1730 aa16.19■□□□□ 0.18
CDHR3-205ENST00000468143 SLC24A1O60721 1099 aa16.18■□□□□ 0.18
CDHR3-205ENST00000468143 SPATA31A1Q5TZJ5 1347 aa16.18■□□□□ 0.18
CDHR3-205ENST00000468143 PIK3C2AO00443 1686 aa16.18■□□□□ 0.18
CDHR3-205ENST00000468143 CAMTA1Q9Y6Y1 1673 aa16.18■□□□□ 0.18
CDHR3-205ENST00000468143 A0A1W2PP64 1363 aa16.17■□□□□ 0.18
CDHR3-205ENST00000468143 KRT27Q7Z3Y8 459 aa16.17■□□□□ 0.18
CDHR3-205ENST00000468143 AKAP12Q02952 1782 aa16.16■□□□□ 0.18
CDHR3-205ENST00000468143 KCNH5Q8NCM2 988 aa16.16■□□□□ 0.18
CDHR3-205ENST00000468143 AXIN2Q9Y2T1 843 aa16.16■□□□□ 0.18
CDHR3-205ENST00000468143 SLIT3O75094 1523 aa16.15■□□□□ 0.18
CDHR3-205ENST00000468143 FAM182BQ5T319 152 aa16.15■□□□□ 0.18
CDHR3-205ENST00000468143 ARHGEF25Q86VW2 580 aa16.14■□□□□ 0.17
CDHR3-205ENST00000468143 AATKQ6ZMQ8 1374 aa16.13■□□□□ 0.17
CDHR3-205ENST00000468143 USP31Q70CQ4 1352 aa16.13■□□□□ 0.17
CDHR3-205ENST00000468143 EDC4Q6P2E9 1401 aaKnown RBP16.12■□□□□ 0.17
CDHR3-205ENST00000468143 LMO7Q8WWI1 1683 aa16.11■□□□□ 0.17
CDHR3-205ENST00000468143 MON2Q7Z3U7 1717 aa16.11■□□□□ 0.17
CDHR3-205ENST00000468143 CDCA8Q53HL2 280 aa16.11■□□□□ 0.17
CDHR3-205ENST00000468143 TOM1L2Q6ZVM7 507 aa16.11■□□□□ 0.17
CDHR3-205ENST00000468143 TCP11L2Q8N4U5 519 aa16.11■□□□□ 0.17
CDHR3-205ENST00000468143 POLR3GLQ9BT43 218 aa16.11■□□□□ 0.17
CDHR3-205ENST00000468143 NINLQ9Y2I6 1382 aa16.11■□□□□ 0.17
CDHR3-205ENST00000468143 COL5A2P05997 1499 aaPredicted RBP16.1■□□□□ 0.17
CDHR3-205ENST00000468143 BRWD3Q6RI45 1802 aa16.1■□□□□ 0.17
CDHR3-205ENST00000468143 CSB-PGBD3P0DP91 1061 aa16.1■□□□□ 0.17
CDHR3-205ENST00000468143 HSPA5P11021 654 aaKnown RBP16.1■□□□□ 0.17
CDHR3-205ENST00000468143 EIF4G2P78344 907 aaKnown RBP eCLIP16.1■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 24.9 ms