RNA–Protein interactions for RNA: ENST00000467985.1

COL7A1-207, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 5

Gene COL7A1, Length 709 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-207ENST00000467985 NWD2Q9ULI1 1742 aa27.33■■□□□ 1.96
COL7A1-207ENST00000467985 SRPK2P78362 688 aaKnown RBP27.32■■□□□ 1.96
COL7A1-207ENST00000467985 PLCH1Q4KWH8 1693 aa27.3■■□□□ 1.96
COL7A1-207ENST00000467985 ACEP12821 1306 aa27.3■■□□□ 1.96
COL7A1-207ENST00000467985 ATAD2Q6PL18 1390 aa27.28■■□□□ 1.96
COL7A1-207ENST00000467985 NBPF8Q3BBV2 869 aa27.28■■□□□ 1.96
COL7A1-207ENST00000467985 EP400Q96L91 3159 aa27.28■■□□□ 1.96
COL7A1-207ENST00000467985 RALGAPBQ86X10 1494 aa27.26■■□□□ 1.95
COL7A1-207ENST00000467985 FAM83GA6ND36 823 aa27.26■■□□□ 1.95
COL7A1-207ENST00000467985 VPS72Q15906 364 aa27.26■■□□□ 1.95
COL7A1-207ENST00000467985 PPIP5K1Q6PFW1 1433 aa27.25■■□□□ 1.95
COL7A1-207ENST00000467985 TONSLQ96HA7 1378 aa27.25■■□□□ 1.95
COL7A1-207ENST00000467985 CRYBG1Q9Y4K1 1723 aa27.25■■□□□ 1.95
COL7A1-207ENST00000467985 CABP2Q9NPB3 220 aa27.25■■□□□ 1.95
COL7A1-207ENST00000467985 EVC2Q86UK5 1308 aa27.24■■□□□ 1.95
COL7A1-207ENST00000467985 COL14A1Q05707 1796 aaKnown RBP27.24■■□□□ 1.95
COL7A1-207ENST00000467985 GLI3P10071 1580 aa27.23■■□□□ 1.95
COL7A1-207ENST00000467985 BRD4O60885 1362 aaPredicted RBP27.22■■□□□ 1.95
COL7A1-207ENST00000467985 BTG4Q9NY30 223 aa27.19■■□□□ 1.94
COL7A1-207ENST00000467985 CCDC9Q9Y3X0 531 aaKnown RBP27.19■■□□□ 1.94
COL7A1-207ENST00000467985 PRDM11Q9NQV5 511 aa27.18■■□□□ 1.94
COL7A1-207ENST00000467985 PHRF1Q9P1Y6 1649 aaKnown RBP27.17■■□□□ 1.94
COL7A1-207ENST00000467985 NRAPQ86VF7 1730 aa27.17■■□□□ 1.94
COL7A1-207ENST00000467985 ABTB2Q8N961 1025 aa27.17■■□□□ 1.94
COL7A1-207ENST00000467985 CARD11Q9BXL7 1154 aa27.16■■□□□ 1.94
COL7A1-207ENST00000467985 CABP1Q9NZU7 370 aa27.16■■□□□ 1.94
COL7A1-207ENST00000467985 ONECUT3O60422 494 aaPredicted RBP27.15■■□□□ 1.94
COL7A1-207ENST00000467985 NUTM2GQ5VZR2 741 aa27.14■■□□□ 1.94
COL7A1-207ENST00000467985 KIAA0232Q92628 1395 aa27.13■■□□□ 1.93
COL7A1-207ENST00000467985 SBNO2Q9Y2G9 1366 aa27.13■■□□□ 1.93
COL7A1-207ENST00000467985 NLRP13Q86W25 1043 aa27.12■■□□□ 1.93
COL7A1-207ENST00000467985 SEPT12Q8IYM1 358 aa27.12■■□□□ 1.93
COL7A1-207ENST00000467985 USP6P35125 1406 aa27.11■■□□□ 1.93
COL7A1-207ENST00000467985 CCDC125Q86Z20 511 aa27.11■■□□□ 1.93
COL7A1-207ENST00000467985 USP19O94966 1318 aa27.1■■□□□ 1.93
COL7A1-207ENST00000467985 ZC3H6P61129 1189 aaKnown RBP27.09■■□□□ 1.93
COL7A1-207ENST00000467985 ZNF692Q9BU19 519 aaPredicted RBP27.08■■□□□ 1.93
COL7A1-207ENST00000467985 BRWD3Q6RI45 1802 aa27.08■■□□□ 1.93
COL7A1-207ENST00000467985 NRKQ7Z2Y5 1582 aa27.08■■□□□ 1.93
COL7A1-207ENST00000467985 CPDO75976 1380 aa27.07■■□□□ 1.92
COL7A1-207ENST00000467985 SPATA31A5Q5VU36 1347 aa27.06■■□□□ 1.92
COL7A1-207ENST00000467985 SPATA31A7Q8IWB4 1347 aa27.06■■□□□ 1.92
COL7A1-207ENST00000467985 CHRNA2Q15822 529 aa27.05■■□□□ 1.92
COL7A1-207ENST00000467985 GCP02774 474 aa27.04■■□□□ 1.92
COL7A1-207ENST00000467985 FAM98CQ17RN3 349 aaKnown RBP27.04■■□□□ 1.92
COL7A1-207ENST00000467985 SSH2Q76I76 1423 aa27.04■■□□□ 1.92
COL7A1-207ENST00000467985 A0A0G2JS52 829 aa27.03■■□□□ 1.92
COL7A1-207ENST00000467985 MYT1Q01538 1121 aa27.03■■□□□ 1.92
COL7A1-207ENST00000467985 KRT27Q7Z3Y8 459 aa27.03■■□□□ 1.92
COL7A1-207ENST00000467985 NLRP6P59044 892 aa27.02■■□□□ 1.92
COL7A1-207ENST00000467985 AKAP12Q02952 1782 aa27.02■■□□□ 1.92
COL7A1-207ENST00000467985 BLMP54132 1417 aaPredicted RBP26.99■■□□□ 1.91
COL7A1-207ENST00000467985 CPSF1Q10570 1443 aaKnown RBP26.99■■□□□ 1.91
COL7A1-207ENST00000467985 SPATA31A1Q5TZJ5 1347 aa26.99■■□□□ 1.91
COL7A1-207ENST00000467985 EVA1CP58658 441 aa26.99■■□□□ 1.91
COL7A1-207ENST00000467985 STRN4Q9NRL3 753 aa26.99■■□□□ 1.91
COL7A1-207ENST00000467985 PIK3C2AO00443 1686 aa26.98■■□□□ 1.91
COL7A1-207ENST00000467985 TTC21AQ8NDW8 1320 aa26.98■■□□□ 1.91
COL7A1-207ENST00000467985 SLIT3O75094 1523 aa26.98■■□□□ 1.91
COL7A1-207ENST00000467985 LMO7Q8WWI1 1683 aa26.98■■□□□ 1.91
COL7A1-207ENST00000467985 KTN1Q86UP2 1357 aaKnown RBP26.97■■□□□ 1.91
COL7A1-207ENST00000467985 TTC21BQ7Z4L5 1316 aa26.97■■□□□ 1.91
COL7A1-207ENST00000467985 SLC24A1O60721 1099 aa26.97■■□□□ 1.91
COL7A1-207ENST00000467985 CAMTA1Q9Y6Y1 1673 aa26.96■■□□□ 1.91
COL7A1-207ENST00000467985 PUS7Q96PZ0 661 aaKnown RBP26.96■■□□□ 1.91
COL7A1-207ENST00000467985 THSD7AQ9UPZ6 1657 aa26.95■■□□□ 1.91
COL7A1-207ENST00000467985 SF3B2Q13435 895 aaKnown RBP26.94■■□□□ 1.9
COL7A1-207ENST00000467985 CLSPNQ9HAW4 1339 aa26.93■■□□□ 1.9
COL7A1-207ENST00000467985 KCNH5Q8NCM2 988 aa26.92■■□□□ 1.9
COL7A1-207ENST00000467985 MON2Q7Z3U7 1717 aa26.92■■□□□ 1.9
COL7A1-207ENST00000467985 AATKQ6ZMQ8 1374 aa26.92■■□□□ 1.9
COL7A1-207ENST00000467985 TMC1Q8TDI8 760 aa26.91■■□□□ 1.9
COL7A1-207ENST00000467985 TIMELESSQ9UNS1 1208 aa26.91■■□□□ 1.9
COL7A1-207ENST00000467985 BARGINQ6ZT62 677 aa26.9■■□□□ 1.9
COL7A1-207ENST00000467985 HDGFL2Q7Z4V5 671 aaPredicted RBP26.9■■□□□ 1.9
COL7A1-207ENST00000467985 COL5A2P05997 1499 aaPredicted RBP26.89■■□□□ 1.9
COL7A1-207ENST00000467985 ST20-MTHFSA0A0A6YYL1 179 aa26.89■■□□□ 1.9
COL7A1-207ENST00000467985 LARP1Q6PKG0 1096 aaKnown RBP26.89■■□□□ 1.9
COL7A1-207ENST00000467985 TESK2Q96S53 571 aa26.88■■□□□ 1.89
COL7A1-207ENST00000467985 TERF2IPQ9NYB0 399 aa26.88■■□□□ 1.89
COL7A1-207ENST00000467985 USP35Q9P2H5 1018 aa26.88■■□□□ 1.89
COL7A1-207ENST00000467985 THRAP3Q9Y2W1 955 aaKnown RBP26.88■■□□□ 1.89
COL7A1-207ENST00000467985 CD163L1Q9NR16 1453 aa26.87■■□□□ 1.89
COL7A1-207ENST00000467985 ZBTB7CA1YPR0 619 aa26.87■■□□□ 1.89
COL7A1-207ENST00000467985 TCP11L2Q8N4U5 519 aa26.87■■□□□ 1.89
COL7A1-207ENST00000467985 SRCAPQ6ZRS2 3230 aa26.86■■□□□ 1.89
COL7A1-207ENST00000467985 NINLQ9Y2I6 1382 aa26.86■■□□□ 1.89
COL7A1-207ENST00000467985 PCGF6Q9BYE7 350 aa26.86■■□□□ 1.89
COL7A1-207ENST00000467985 SLC12A5Q9H2X9 1139 aa26.85■■□□□ 1.89
COL7A1-207ENST00000467985 ZRANB1Q9UGI0 708 aa26.85■■□□□ 1.89
COL7A1-207ENST00000467985 CRB1P82279 1406 aa26.84■■□□□ 1.89
COL7A1-207ENST00000467985 SUGP2Q8IX01 1082 aaKnown RBP eCLIP26.84■■□□□ 1.89
COL7A1-207ENST00000467985 EDC4Q6P2E9 1401 aaKnown RBP26.83■■□□□ 1.89
COL7A1-207ENST00000467985 ARHGEF25Q86VW2 580 aa26.83■■□□□ 1.89
COL7A1-207ENST00000467985 USP31Q70CQ4 1352 aa26.83■■□□□ 1.88
COL7A1-207ENST00000467985 USP54Q70EL1 1684 aa26.82■■□□□ 1.88
COL7A1-207ENST00000467985 COL18A1P39060 1754 aa26.82■■□□□ 1.88
COL7A1-207ENST00000467985 USP47Q96K76 1375 aa26.82■■□□□ 1.88
COL7A1-207ENST00000467985 NFAT5O94916 1531 aa26.81■■□□□ 1.88
COL7A1-207ENST00000467985 RGPD1P0DJD0 1748 aa26.81■■□□□ 1.88
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms