RNA–Protein interactions for RNA: ENST00000467731.1

SCAF4-204, Transcript of SR-related CTD associated factor 4, humanhuman

TSL 1 (best)

Gene SCAF4, Length 2,976 nt, Biotype retained intron.

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCAF4-204ENST00000467731 SUGP2Q8IX01 1082 aaKnown RBP eCLIP9.38□□□□□ -0.91
SCAF4-204ENST00000467731 DDX17Q92841 729 aaKnown RBP9.38□□□□□ -0.91
SCAF4-204ENST00000467731 CGNL1Q0VF96 1302 aa9.37□□□□□ -0.91
SCAF4-204ENST00000467731 XPCQ01831 940 aaPredicted RBP9.37□□□□□ -0.91
SCAF4-204ENST00000467731 PSME1Q06323 249 aa9.37□□□□□ -0.91
SCAF4-204ENST00000467731 CC2D1BQ5T0F9 858 aaKnown RBP9.37□□□□□ -0.91
SCAF4-204ENST00000467731 TOM1O60784 492 aa9.36□□□□□ -0.91
SCAF4-204ENST00000467731 SSH2Q76I76 1423 aa9.36□□□□□ -0.91
SCAF4-204ENST00000467731 TRPM3Q9HCF6 1732 aaPredicted RBP9.36□□□□□ -0.91
SCAF4-204ENST00000467731 NHSL1Q5SYE7 1610 aa9.36□□□□□ -0.91
SCAF4-204ENST00000467731 ANKRD26Q9UPS8 1709 aa9.36□□□□□ -0.91
SCAF4-204ENST00000467731 NPHP3Q7Z494 1330 aa9.36□□□□□ -0.91
SCAF4-204ENST00000467731 TTC21BQ7Z4L5 1316 aa9.36□□□□□ -0.91
SCAF4-204ENST00000467731 UBAP1LF5GYI3 381 aa9.36□□□□□ -0.91
SCAF4-204ENST00000467731 PIK3C2AO00443 1686 aa9.35□□□□□ -0.91
SCAF4-204ENST00000467731 FYB1O15117 783 aa9.35□□□□□ -0.91
SCAF4-204ENST00000467731 ANP32CO43423 234 aa9.35□□□□□ -0.91
SCAF4-204ENST00000467731 PAK3O75914 559 aaPredicted RBP9.35□□□□□ -0.91
SCAF4-204ENST00000467731 PIP4K2BP78356 416 aa9.35□□□□□ -0.91
SCAF4-204ENST00000467731 KRT28Q7Z3Y7 464 aa9.35□□□□□ -0.91
SCAF4-204ENST00000467731 GGNBP2Q9H3C7 697 aa9.35□□□□□ -0.91
SCAF4-204ENST00000467731 PRKRIP1Q9H875 184 aaPredicted RBP9.35□□□□□ -0.91
SCAF4-204ENST00000467731 NPC1L1Q9UHC9 1359 aa9.35□□□□□ -0.91
SCAF4-204ENST00000467731 PXDNQ92626 1479 aa9.34□□□□□ -0.91
SCAF4-204ENST00000467731 NME9Q86XW9 330 aa9.34□□□□□ -0.91
SCAF4-204ENST00000467731 TTC21AQ8NDW8 1320 aa9.34□□□□□ -0.91
SCAF4-204ENST00000467731 BRD4O60885 1362 aaPredicted RBP9.33□□□□□ -0.92
SCAF4-204ENST00000467731 NSD2O96028 1365 aa9.33□□□□□ -0.92
SCAF4-204ENST00000467731 ALS2Q96Q42 1657 aa9.33□□□□□ -0.92
SCAF4-204ENST00000467731 ZRANB1Q9UGI0 708 aa9.33□□□□□ -0.92
SCAF4-204ENST00000467731 MARF1Q9Y4F3 1742 aaKnown RBP9.33□□□□□ -0.92
SCAF4-204ENST00000467731 PARD3Q8TEW0 1356 aa9.33□□□□□ -0.92
SCAF4-204ENST00000467731 MIER1Q8N108 512 aa9.33□□□□□ -0.92
SCAF4-204ENST00000467731 ABTB2Q8N961 1025 aa9.33□□□□□ -0.92
SCAF4-204ENST00000467731 SOS2Q07890 1332 aaPredicted RBP9.32□□□□□ -0.92
SCAF4-204ENST00000467731 AHDC1Q5TGY3 1603 aaPredicted RBP9.32□□□□□ -0.92
SCAF4-204ENST00000467731 NUTM2GQ5VZR2 741 aa9.32□□□□□ -0.92
SCAF4-204ENST00000467731 ANP32EQ9BTT0 268 aa9.32□□□□□ -0.92
SCAF4-204ENST00000467731 OVOS2A0A0J9YW53 1432 aa9.31□□□□□ -0.92
SCAF4-204ENST00000467731 OVOS2Q6IE36 1432 aa9.31□□□□□ -0.92
SCAF4-204ENST00000467731 USP54Q70EL1 1684 aa9.31□□□□□ -0.92
SCAF4-204ENST00000467731 PHLPP1O60346 1717 aa9.31□□□□□ -0.92
SCAF4-204ENST00000467731 LMOD2Q6P5Q4 547 aa9.31□□□□□ -0.92
SCAF4-204ENST00000467731 MORC1Q86VD1 984 aa9.31□□□□□ -0.92
SCAF4-204ENST00000467731 TNS3Q68CZ2 1445 aa9.31□□□□□ -0.92
SCAF4-204ENST00000467731 MAP2P11137 1827 aaKnown RBP9.31□□□□□ -0.92
SCAF4-204ENST00000467731 TNNT2P45379 298 aaPredicted RBP9.31□□□□□ -0.92
SCAF4-204ENST00000467731 NLRP6P59044 892 aa9.31□□□□□ -0.92
SCAF4-204ENST00000467731 RALBP1Q15311 655 aa9.31□□□□□ -0.92
SCAF4-204ENST00000467731 COG3Q96JB2 828 aa9.31□□□□□ -0.92
SCAF4-204ENST00000467731 SBNO1A3KN83 1393 aa9.31□□□□□ -0.92
SCAF4-204ENST00000467731 SPATA31A3Q5VYP0 1347 aa9.3□□□□□ -0.92
SCAF4-204ENST00000467731 USP31Q70CQ4 1352 aa9.3□□□□□ -0.92
SCAF4-204ENST00000467731 COL16A1Q07092 1604 aaPredicted RBP9.29□□□□□ -0.92
SCAF4-204ENST00000467731 FBLN1P23142 703 aa9.29□□□□□ -0.92
SCAF4-204ENST00000467731 MYBBP1AQ9BQG0 1328 aaKnown RBP9.29□□□□□ -0.92
SCAF4-204ENST00000467731 SOX12O15370 315 aa9.28□□□□□ -0.92
SCAF4-204ENST00000467731 PLEKHG5O94827 1062 aa9.28□□□□□ -0.92
SCAF4-204ENST00000467731 NLRP13Q86W25 1043 aa9.28□□□□□ -0.92
SCAF4-204ENST00000467731 ARHGEF10O15013 1369 aa9.28□□□□□ -0.92
SCAF4-204ENST00000467731 CRYBG1Q9Y4K1 1723 aa9.28□□□□□ -0.92
SCAF4-204ENST00000467731 PPP2R1AP30153 589 aa9.27□□□□□ -0.92
SCAF4-204ENST00000467731 MED1Q15648 1581 aaPredicted RBP9.27□□□□□ -0.92
SCAF4-204ENST00000467731 PHRF1Q9P1Y6 1649 aaKnown RBP9.27□□□□□ -0.93
SCAF4-204ENST00000467731 LRRC59Q96AG4 307 aaKnown RBP9.27□□□□□ -0.93
SCAF4-204ENST00000467731 GTF3C3Q9Y5Q9 886 aa9.27□□□□□ -0.93
SCAF4-204ENST00000467731 LTN1O94822 1766 aa9.27□□□□□ -0.93
SCAF4-204ENST00000467731 USP19O94966 1318 aa9.26□□□□□ -0.93
SCAF4-204ENST00000467731 SLIT3O75094 1523 aa9.26□□□□□ -0.93
SCAF4-204ENST00000467731 ABCA3Q99758 1704 aa9.26□□□□□ -0.93
SCAF4-204ENST00000467731 RRS1Q15050 365 aaKnown RBP9.26□□□□□ -0.93
SCAF4-204ENST00000467731 CCDC184Q52MB2 194 aa9.26□□□□□ -0.93
SCAF4-204ENST00000467731 CABLES1Q8TDN4 633 aa9.26□□□□□ -0.93
SCAF4-204ENST00000467731 AATKQ6ZMQ8 1374 aa9.26□□□□□ -0.93
SCAF4-204ENST00000467731 NFAT5O94916 1531 aa9.26□□□□□ -0.93
SCAF4-204ENST00000467731 GCP02774 474 aa9.25□□□□□ -0.93
SCAF4-204ENST00000467731 POLKQ9UBT6 870 aa9.25□□□□□ -0.93
SCAF4-204ENST00000467731 EMILIN1Q9Y6C2 1016 aa9.25□□□□□ -0.93
SCAF4-204ENST00000467731 MTHFSP49914 203 aa9.24□□□□□ -0.93
SCAF4-204ENST00000467731 COL22A1Q8NFW1 1626 aaPredicted RBP9.24□□□□□ -0.93
SCAF4-204ENST00000467731 PNPLA6Q8IY17 1366 aa9.24□□□□□ -0.93
SCAF4-204ENST00000467731 PEAK1Q9H792 1746 aa9.24□□□□□ -0.93
SCAF4-204ENST00000467731 CCER2I3L3R5 266 aa9.24□□□□□ -0.93
SCAF4-204ENST00000467731 KCNH5Q8NCM2 988 aa9.24□□□□□ -0.93
SCAF4-204ENST00000467731 PPM1GO15355 546 aaPredicted RBP9.24□□□□□ -0.93
SCAF4-204ENST00000467731 SMG6Q86US8 1419 aaKnown RBP9.23□□□□□ -0.93
SCAF4-204ENST00000467731 MAP3K19Q56UN5 1328 aa9.23□□□□□ -0.93
SCAF4-204ENST00000467731 SHPRHQ149N8 1683 aa9.23□□□□□ -0.93
SCAF4-204ENST00000467731 MRS2Q9HD23 443 aa9.23□□□□□ -0.93
SCAF4-204ENST00000467731 HSPA1LP34931 641 aa9.23□□□□□ -0.93
SCAF4-204ENST00000467731 ZC3H6P61129 1189 aaKnown RBP9.22□□□□□ -0.93
SCAF4-204ENST00000467731 HAP1P54257 671 aaPredicted RBP9.22□□□□□ -0.93
SCAF4-204ENST00000467731 CDK12Q9NYV4 1490 aaPredicted RBP9.22□□□□□ -0.93
SCAF4-204ENST00000467731 RGPD5Q99666 1765 aa9.22□□□□□ -0.93
SCAF4-204ENST00000467731 ZBTB7CA1YPR0 619 aa9.21□□□□□ -0.93
SCAF4-204ENST00000467731 ARHGEF25Q86VW2 580 aa9.21□□□□□ -0.94
SCAF4-204ENST00000467731 AMPHP49418 695 aa9.21□□□□□ -0.94
SCAF4-204ENST00000467731 FLT4P35916 1363 aa9.2□□□□□ -0.94
SCAF4-204ENST00000467731 KIAA0232Q92628 1395 aa9.2□□□□□ -0.94
SCAF4-204ENST00000467731 JCADQ9P266 1359 aa9.2□□□□□ -0.94
Retrieved 100 of 20,778 RNA–protein pairs in 12 ms