RNA–Protein interactions for RNA: ENST00000466285.1

COL6A1-203, Transcript of collagen type VI alpha 1 chain, humanhuman

TSL 3

Gene COL6A1, Length 500 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL6A1-203ENST00000466285 THSD7AQ9UPZ6 1657 aa30.12■■■□□ 2.41
COL6A1-203ENST00000466285 BTG4Q9NY30 223 aa30.11■■■□□ 2.41
COL6A1-203ENST00000466285 NBPF1Q3BBV0 1214 aa30.1■■■□□ 2.41
COL6A1-203ENST00000466285 DEFB132Q7Z7B7 95 aa30.1■■■□□ 2.41
COL6A1-203ENST00000466285 NGDNQ8NEJ9 315 aaKnown RBP30.1■■■□□ 2.41
COL6A1-203ENST00000466285 NUDT16Q96DE0 195 aaKnown RBP30.1■■■□□ 2.41
COL6A1-203ENST00000466285 NRKQ7Z2Y5 1582 aa30.09■■■□□ 2.41
COL6A1-203ENST00000466285 QRICH2Q9H0J4 1663 aa30.09■■■□□ 2.41
COL6A1-203ENST00000466285 ONECUT3O60422 494 aaPredicted RBP30.08■■■□□ 2.41
COL6A1-203ENST00000466285 PAK3O75914 559 aaPredicted RBP30.07■■■□□ 2.4
COL6A1-203ENST00000466285 STAC3Q96MF2 364 aa30.07■■■□□ 2.4
COL6A1-203ENST00000466285 CDK19Q9BWU1 502 aa30.06■■■□□ 2.4
COL6A1-203ENST00000466285 FAM98CQ17RN3 349 aaKnown RBP30.05■■■□□ 2.4
COL6A1-203ENST00000466285 CCDC125Q86Z20 511 aa30.04■■■□□ 2.4
COL6A1-203ENST00000466285 POLR3AO14802 1390 aaPredicted RBP30.03■■■□□ 2.4
COL6A1-203ENST00000466285 NUTM2GQ5VZR2 741 aa30.03■■■□□ 2.4
COL6A1-203ENST00000466285 KRT27Q7Z3Y8 459 aa30.03■■■□□ 2.4
COL6A1-203ENST00000466285 KIAA0232Q92628 1395 aa30.03■■■□□ 2.4
COL6A1-203ENST00000466285 TNS1Q9HBL0 1735 aaKnown RBP30.02■■■□□ 2.4
COL6A1-203ENST00000466285 ZRANB1Q9UGI0 708 aa30.01■■■□□ 2.39
COL6A1-203ENST00000466285 A0A0G2JS52 829 aa30■■■□□ 2.39
COL6A1-203ENST00000466285 MYT1Q01538 1121 aa30■■■□□ 2.39
COL6A1-203ENST00000466285 CHRNA2Q15822 529 aa30■■■□□ 2.39
COL6A1-203ENST00000466285 FAM182BQ5T319 152 aa30■■■□□ 2.39
COL6A1-203ENST00000466285 ACEP12821 1306 aa29.99■■■□□ 2.39
COL6A1-203ENST00000466285 SPATA31A5Q5VU36 1347 aa29.99■■■□□ 2.39
COL6A1-203ENST00000466285 SPATA31A7Q8IWB4 1347 aa29.99■■■□□ 2.39
COL6A1-203ENST00000466285 RGPD1P0DJD0 1748 aa29.99■■■□□ 2.39
COL6A1-203ENST00000466285 LMO7Q8WWI1 1683 aa29.98■■■□□ 2.39
COL6A1-203ENST00000466285 TRPM1Q7Z4N2 1603 aa29.98■■■□□ 2.39
COL6A1-203ENST00000466285 PRDM11Q9NQV5 511 aa29.98■■■□□ 2.39
COL6A1-203ENST00000466285 CAMTA1Q9Y6Y1 1673 aa29.93■■■□□ 2.38
COL6A1-203ENST00000466285 ZC3H6P61129 1189 aaKnown RBP29.93■■■□□ 2.38
COL6A1-203ENST00000466285 NBPF8Q3BBV2 869 aa29.93■■■□□ 2.38
COL6A1-203ENST00000466285 PPIP5K1Q6PFW1 1433 aa29.93■■■□□ 2.38
COL6A1-203ENST00000466285 CCDC61Q9Y6R9 512 aa29.91■■■□□ 2.38
COL6A1-203ENST00000466285 PLEKHG3A1L390 1219 aa29.9■■■□□ 2.38
COL6A1-203ENST00000466285 CABP2Q9NPB3 220 aa29.9■■■□□ 2.38
COL6A1-203ENST00000466285 CENPJQ9HC77 1338 aaPredicted RBP29.9■■■□□ 2.38
COL6A1-203ENST00000466285 SPATA31A1Q5TZJ5 1347 aa29.89■■■□□ 2.38
COL6A1-203ENST00000466285 PIK3C2AO00443 1686 aa29.88■■■□□ 2.37
COL6A1-203ENST00000466285 STRN4Q9NRL3 753 aa29.88■■■□□ 2.37
COL6A1-203ENST00000466285 USP19O94966 1318 aa29.88■■■□□ 2.37
COL6A1-203ENST00000466285 SSH2Q76I76 1423 aa29.88■■■□□ 2.37
COL6A1-203ENST00000466285 L3MBTL2Q969R5 705 aa29.87■■■□□ 2.37
COL6A1-203ENST00000466285 SIN3AQ96ST3 1273 aa29.87■■■□□ 2.37
COL6A1-203ENST00000466285 LRP5O75197 1615 aa29.85■■■□□ 2.37
COL6A1-203ENST00000466285 SRPK2P78362 688 aaKnown RBP29.85■■■□□ 2.37
COL6A1-203ENST00000466285 SF3B2Q13435 895 aaKnown RBP29.85■■■□□ 2.37
COL6A1-203ENST00000466285 ABTB2Q8N961 1025 aa29.82■■■□□ 2.36
COL6A1-203ENST00000466285 SLIT3O75094 1523 aa29.81■■■□□ 2.36
COL6A1-203ENST00000466285 USP6P35125 1406 aa29.81■■■□□ 2.36
COL6A1-203ENST00000466285 AKAP12Q02952 1782 aa29.81■■■□□ 2.36
COL6A1-203ENST00000466285 CPDO75976 1380 aa29.8■■■□□ 2.36
COL6A1-203ENST00000466285 PSDA5PKW4 1024 aaPredicted RBP29.8■■■□□ 2.36
COL6A1-203ENST00000466285 EN1Q05925 392 aaPredicted RBP29.8■■■□□ 2.36
COL6A1-203ENST00000466285 USP35Q9P2H5 1018 aa29.8■■■□□ 2.36
COL6A1-203ENST00000466285 LARP1Q6PKG0 1096 aaKnown RBP29.79■■■□□ 2.36
COL6A1-203ENST00000466285 COL5A2P05997 1499 aaPredicted RBP29.79■■■□□ 2.36
COL6A1-203ENST00000466285 COL18A1P39060 1754 aa29.78■■■□□ 2.36
COL6A1-203ENST00000466285 PARP4Q9UKK3 1724 aaKnown RBP29.77■■■□□ 2.36
COL6A1-203ENST00000466285 BAG6P46379 1132 aa29.77■■■□□ 2.36
COL6A1-203ENST00000466285 DISP2A7MBM2 1401 aa29.77■■■□□ 2.36
COL6A1-203ENST00000466285 RREB1Q92766 1687 aa29.76■■■□□ 2.36
COL6A1-203ENST00000466285 WNK3Q9BYP7 1800 aa29.76■■■□□ 2.35
COL6A1-203ENST00000466285 CABP1Q9NZU7 370 aa29.75■■■□□ 2.35
COL6A1-203ENST00000466285 RGPD5Q99666 1765 aa29.74■■■□□ 2.35
COL6A1-203ENST00000466285 LRRC37A3O60309 1634 aa29.74■■■□□ 2.35
COL6A1-203ENST00000466285 NUP188Q5SRE5 1749 aa29.74■■■□□ 2.35
COL6A1-203ENST00000466285 GCP02774 474 aa29.72■■■□□ 2.35
COL6A1-203ENST00000466285 NEUROD1Q13562 356 aa29.71■■■□□ 2.35
COL6A1-203ENST00000466285 PEAK1Q9H792 1746 aa29.71■■■□□ 2.35
COL6A1-203ENST00000466285 ROCK2O75116 1388 aaKnown RBP29.7■■■□□ 2.35
COL6A1-203ENST00000466285 TRIM37O94972 964 aa29.7■■■□□ 2.35
COL6A1-203ENST00000466285 EZH2Q15910 746 aaKnown RBP29.7■■■□□ 2.35
COL6A1-203ENST00000466285 MON2Q7Z3U7 1717 aa29.69■■■□□ 2.34
COL6A1-203ENST00000466285 ZBTB7CA1YPR0 619 aa29.68■■■□□ 2.34
COL6A1-203ENST00000466285 BARGINQ6ZT62 677 aa29.68■■■□□ 2.34
COL6A1-203ENST00000466285 NLRP13Q86W25 1043 aa29.68■■■□□ 2.34
COL6A1-203ENST00000466285 EVA1CP58658 441 aa29.67■■■□□ 2.34
COL6A1-203ENST00000466285 BRD4O60885 1362 aaPredicted RBP29.64■■■□□ 2.34
COL6A1-203ENST00000466285 SBF2Q86WG5 1849 aa29.64■■■□□ 2.34
COL6A1-203ENST00000466285 TCP11L2Q8N4U5 519 aa29.64■■■□□ 2.34
COL6A1-203ENST00000466285 CRB1P82279 1406 aa29.63■■■□□ 2.33
COL6A1-203ENST00000466285 NFAT5O94916 1531 aa29.63■■■□□ 2.33
COL6A1-203ENST00000466285 NLRP6P59044 892 aa29.63■■■□□ 2.33
COL6A1-203ENST00000466285 R3HDM1Q15032 1099 aaKnown RBP29.63■■■□□ 2.33
COL6A1-203ENST00000466285 CAMKK2Q96RR4 588 aa29.63■■■□□ 2.33
COL6A1-203ENST00000466285 EVC2Q86UK5 1308 aa29.63■■■□□ 2.33
COL6A1-203ENST00000466285 FAM196AQ6ZSG2 479 aa29.62■■■□□ 2.33
COL6A1-203ENST00000466285 CPSF1Q10570 1443 aaKnown RBP29.62■■■□□ 2.33
COL6A1-203ENST00000466285 AATKQ6ZMQ8 1374 aa29.61■■■□□ 2.33
COL6A1-203ENST00000466285 TTC21BQ7Z4L5 1316 aa29.58■■■□□ 2.33
COL6A1-203ENST00000466285 AXIN2Q9Y2T1 843 aa29.58■■■□□ 2.33
COL6A1-203ENST00000466285 USP54Q70EL1 1684 aa29.57■■■□□ 2.32
COL6A1-203ENST00000466285 CD163L1Q9NR16 1453 aa29.57■■■□□ 2.32
COL6A1-203ENST00000466285 APBA3O96018 575 aa29.57■■■□□ 2.32
COL6A1-203ENST00000466285 PDE3BQ13370 1112 aa29.56■■■□□ 2.32
COL6A1-203ENST00000466285 SOX12O15370 315 aa29.55■■■□□ 2.32
COL6A1-203ENST00000466285 LTN1O94822 1766 aa29.52■■■□□ 2.32
Retrieved 100 of 20,778 RNA–protein pairs in 31.5 ms