RNA–Protein interactions for RNA: ENST00000465441.1

CSPG5-204, Transcript of chondroitin sulfate proteoglycan 5, humanhuman

TSL 4

Gene CSPG5, Length 593 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CSPG5-204ENST00000465441 NBPF8Q3BBV2 869 aa30.15■■■□□ 2.42
CSPG5-204ENST00000465441 ACEP12821 1306 aa30.15■■■□□ 2.42
CSPG5-204ENST00000465441 L3MBTL2Q969R5 705 aa30.14■■■□□ 2.42
CSPG5-204ENST00000465441 PLEKHG3A1L390 1219 aa30.13■■■□□ 2.41
CSPG5-204ENST00000465441 SIN3AQ96ST3 1273 aa30.13■■■□□ 2.41
CSPG5-204ENST00000465441 BRWD3Q6RI45 1802 aa30.12■■■□□ 2.41
CSPG5-204ENST00000465441 KRT27Q7Z3Y8 459 aa30.11■■■□□ 2.41
CSPG5-204ENST00000465441 ITSN1Q15811 1721 aa30.1■■■□□ 2.41
CSPG5-204ENST00000465441 NUTM2GQ5VZR2 741 aa30.1■■■□□ 2.41
CSPG5-204ENST00000465441 PRDM11Q9NQV5 511 aa30.1■■■□□ 2.41
CSPG5-204ENST00000465441 POLR3AO14802 1390 aaPredicted RBP30.1■■■□□ 2.41
CSPG5-204ENST00000465441 FAM98CQ17RN3 349 aaKnown RBP30.09■■■□□ 2.41
CSPG5-204ENST00000465441 CENPJQ9HC77 1338 aaPredicted RBP30.09■■■□□ 2.41
CSPG5-204ENST00000465441 ZRANB1Q9UGI0 708 aa30.08■■■□□ 2.41
CSPG5-204ENST00000465441 COL14A1Q05707 1796 aaKnown RBP30.08■■■□□ 2.41
CSPG5-204ENST00000465441 BLMP54132 1417 aaPredicted RBP30.07■■■□□ 2.4
CSPG5-204ENST00000465441 A0A0G2JS52 829 aa30.07■■■□□ 2.4
CSPG5-204ENST00000465441 SRPK2P78362 688 aaKnown RBP30.07■■■□□ 2.4
CSPG5-204ENST00000465441 MYT1Q01538 1121 aa30.07■■■□□ 2.4
CSPG5-204ENST00000465441 EP400Q96L91 3159 aa30.07■■■□□ 2.4
CSPG5-204ENST00000465441 NRAPQ86VF7 1730 aa30.06■■■□□ 2.4
CSPG5-204ENST00000465441 CABP2Q9NPB3 220 aa30.06■■■□□ 2.4
CSPG5-204ENST00000465441 NEUROD1Q13562 356 aa30.05■■■□□ 2.4
CSPG5-204ENST00000465441 CRYBG1Q9Y4K1 1723 aa30.05■■■□□ 2.4
CSPG5-204ENST00000465441 SPATA31A5Q5VU36 1347 aa30.04■■■□□ 2.4
CSPG5-204ENST00000465441 SPATA31A7Q8IWB4 1347 aa30.04■■■□□ 2.4
CSPG5-204ENST00000465441 ZC3H6P61129 1189 aaKnown RBP30.04■■■□□ 2.4
CSPG5-204ENST00000465441 CHRNA2Q15822 529 aa30.04■■■□□ 2.4
CSPG5-204ENST00000465441 DEFB132Q7Z7B7 95 aa30.04■■■□□ 2.4
CSPG5-204ENST00000465441 KIAA0232Q92628 1395 aa30.03■■■□□ 2.4
CSPG5-204ENST00000465441 ABTB2Q8N961 1025 aa30.03■■■□□ 2.4
CSPG5-204ENST00000465441 SF3B2Q13435 895 aaKnown RBP30.02■■■□□ 2.4
CSPG5-204ENST00000465441 TOPAZ1Q8N9V7 1692 aa30.01■■■□□ 2.39
CSPG5-204ENST00000465441 PPIP5K1Q6PFW1 1433 aa29.98■■■□□ 2.39
CSPG5-204ENST00000465441 STRN4Q9NRL3 753 aa29.98■■■□□ 2.39
CSPG5-204ENST00000465441 CABP1Q9NZU7 370 aa29.97■■■□□ 2.39
CSPG5-204ENST00000465441 SPATA31A1Q5TZJ5 1347 aa29.95■■■□□ 2.38
CSPG5-204ENST00000465441 FAM182BQ5T319 152 aa29.94■■■□□ 2.38
CSPG5-204ENST00000465441 NLRP13Q86W25 1043 aa29.94■■■□□ 2.38
CSPG5-204ENST00000465441 PHRF1Q9P1Y6 1649 aaKnown RBP29.93■■■□□ 2.38
CSPG5-204ENST00000465441 EVA1CP58658 441 aa29.93■■■□□ 2.38
CSPG5-204ENST00000465441 GCP02774 474 aa29.91■■■□□ 2.38
CSPG5-204ENST00000465441 USP19O94966 1318 aa29.91■■■□□ 2.38
CSPG5-204ENST00000465441 QRICH2Q9H0J4 1663 aa29.9■■■□□ 2.38
CSPG5-204ENST00000465441 EVC2Q86UK5 1308 aa29.9■■■□□ 2.38
CSPG5-204ENST00000465441 USP35Q9P2H5 1018 aa29.88■■■□□ 2.37
CSPG5-204ENST00000465441 BRD4O60885 1362 aaPredicted RBP29.88■■■□□ 2.37
CSPG5-204ENST00000465441 ROCK2O75116 1388 aaKnown RBP29.88■■■□□ 2.37
CSPG5-204ENST00000465441 TRPM1Q7Z4N2 1603 aa29.87■■■□□ 2.37
CSPG5-204ENST00000465441 BAG6P46379 1132 aa29.87■■■□□ 2.37
CSPG5-204ENST00000465441 CPDO75976 1380 aa29.87■■■□□ 2.37
CSPG5-204ENST00000465441 NLRP6P59044 892 aa29.85■■■□□ 2.37
CSPG5-204ENST00000465441 LARP1Q6PKG0 1096 aaKnown RBP29.85■■■□□ 2.37
CSPG5-204ENST00000465441 CAMTA1Q9Y6Y1 1673 aa29.85■■■□□ 2.37
CSPG5-204ENST00000465441 USP6P35125 1406 aa29.84■■■□□ 2.37
CSPG5-204ENST00000465441 NRKQ7Z2Y5 1582 aa29.84■■■□□ 2.37
CSPG5-204ENST00000465441 THSD7AQ9UPZ6 1657 aa29.84■■■□□ 2.37
CSPG5-204ENST00000465441 SSH2Q76I76 1423 aa29.83■■■□□ 2.37
CSPG5-204ENST00000465441 BARGINQ6ZT62 677 aa29.82■■■□□ 2.36
CSPG5-204ENST00000465441 EN1Q05925 392 aaPredicted RBP29.81■■■□□ 2.36
CSPG5-204ENST00000465441 ZNF692Q9BU19 519 aaPredicted RBP29.8■■■□□ 2.36
CSPG5-204ENST00000465441 ZBTB7CA1YPR0 619 aa29.78■■■□□ 2.36
CSPG5-204ENST00000465441 FAM196AQ6ZSG2 479 aa29.78■■■□□ 2.36
CSPG5-204ENST00000465441 TCP11L2Q8N4U5 519 aa29.78■■■□□ 2.36
CSPG5-204ENST00000465441 LMO7Q8WWI1 1683 aa29.76■■■□□ 2.36
CSPG5-204ENST00000465441 PDE3BQ13370 1112 aa29.76■■■□□ 2.35
CSPG5-204ENST00000465441 TTC21BQ7Z4L5 1316 aa29.75■■■□□ 2.35
CSPG5-204ENST00000465441 THRAP3Q9Y2W1 955 aaKnown RBP29.75■■■□□ 2.35
CSPG5-204ENST00000465441 TRIM37O94972 964 aa29.74■■■□□ 2.35
CSPG5-204ENST00000465441 SRCAPQ6ZRS2 3230 aa29.72■■■□□ 2.35
CSPG5-204ENST00000465441 CARD11Q9BXL7 1154 aa29.72■■■□□ 2.35
CSPG5-204ENST00000465441 PSDA5PKW4 1024 aaPredicted RBP29.71■■■□□ 2.35
CSPG5-204ENST00000465441 EZH2Q15910 746 aaKnown RBP29.71■■■□□ 2.35
CSPG5-204ENST00000465441 AATKQ6ZMQ8 1374 aa29.71■■■□□ 2.35
CSPG5-204ENST00000465441 COL5A2P05997 1499 aaPredicted RBP29.71■■■□□ 2.35
CSPG5-204ENST00000465441 RGPD1P0DJD0 1748 aa29.71■■■□□ 2.35
CSPG5-204ENST00000465441 SLIT3O75094 1523 aa29.7■■■□□ 2.34
CSPG5-204ENST00000465441 AXIN2Q9Y2T1 843 aa29.68■■■□□ 2.34
CSPG5-204ENST00000465441 APBA3O96018 575 aa29.67■■■□□ 2.34
CSPG5-204ENST00000465441 CAMKK2Q96RR4 588 aa29.67■■■□□ 2.34
CSPG5-204ENST00000465441 DISP2A7MBM2 1401 aa29.67■■■□□ 2.34
CSPG5-204ENST00000465441 CPSF1Q10570 1443 aaKnown RBP29.67■■■□□ 2.34
CSPG5-204ENST00000465441 TTC21AQ8NDW8 1320 aa29.67■■■□□ 2.34
CSPG5-204ENST00000465441 PIK3C2AO00443 1686 aa29.66■■■□□ 2.34
CSPG5-204ENST00000465441 CRB1P82279 1406 aa29.66■■■□□ 2.34
CSPG5-204ENST00000465441 ARHGEF25Q86VW2 580 aa29.66■■■□□ 2.34
CSPG5-204ENST00000465441 KCNH5Q8NCM2 988 aa29.66■■■□□ 2.34
CSPG5-204ENST00000465441 KTN1Q86UP2 1357 aaKnown RBP29.64■■■□□ 2.34
CSPG5-204ENST00000465441 TONSLQ96HA7 1378 aa29.64■■■□□ 2.34
CSPG5-204ENST00000465441 SOX12O15370 315 aa29.64■■■□□ 2.34
CSPG5-204ENST00000465441 TOM1L2Q6ZVM7 507 aa29.64■■■□□ 2.34
CSPG5-204ENST00000465441 SBNO2Q9Y2G9 1366 aa29.64■■■□□ 2.33
CSPG5-204ENST00000465441 TNS1Q9HBL0 1735 aaKnown RBP29.62■■■□□ 2.33
CSPG5-204ENST00000465441 AKAP12Q02952 1782 aa29.62■■■□□ 2.33
CSPG5-204ENST00000465441 COL18A1P39060 1754 aa29.61■■■□□ 2.33
CSPG5-204ENST00000465441 R3HDM1Q15032 1099 aaKnown RBP29.6■■■□□ 2.33
CSPG5-204ENST00000465441 SUGP2Q8IX01 1082 aaKnown RBP eCLIP29.59■■■□□ 2.33
CSPG5-204ENST00000465441 TMC1Q8TDI8 760 aa29.59■■■□□ 2.33
CSPG5-204ENST00000465441 WDR17Q8IZU2 1322 aa29.59■■■□□ 2.33
CSPG5-204ENST00000465441 SLC12A5Q9H2X9 1139 aa29.58■■■□□ 2.33
Retrieved 100 of 20,778 RNA–protein pairs in 42.7 ms