RNA–Protein interactions for RNA: ENST00000465132.1

CPSF4-209, Transcript of cleavage and polyadenylation specific factor 4, humanhuman

TSL 2

Gene CPSF4, Length 927 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF4-209ENST00000465132 L3MBTL2Q969R5 705 aa24.88■■□□□ 1.57
CPSF4-209ENST00000465132 BRWD3Q6RI45 1802 aa24.88■■□□□ 1.57
CPSF4-209ENST00000465132 ALS2Q96Q42 1657 aa24.88■■□□□ 1.57
CPSF4-209ENST00000465132 NGDNQ8NEJ9 315 aaKnown RBP24.87■■□□□ 1.57
CPSF4-209ENST00000465132 KRT27Q7Z3Y8 459 aa24.85■■□□□ 1.57
CPSF4-209ENST00000465132 BTG4Q9NY30 223 aa24.85■■□□□ 1.57
CPSF4-209ENST00000465132 ARHGEF28Q8N1W1 1705 aaKnown RBP24.83■■□□□ 1.57
CPSF4-209ENST00000465132 PAK3O75914 559 aaPredicted RBP24.83■■□□□ 1.57
CPSF4-209ENST00000465132 DEFB132Q7Z7B7 95 aa24.83■■□□□ 1.57
CPSF4-209ENST00000465132 NUDT16Q96DE0 195 aaKnown RBP24.83■■□□□ 1.57
CPSF4-209ENST00000465132 NRAPQ86VF7 1730 aa24.83■■□□□ 1.57
CPSF4-209ENST00000465132 ATP7BP35670 1465 aa24.83■■□□□ 1.56
CPSF4-209ENST00000465132 SF3B2Q13435 895 aaKnown RBP24.82■■□□□ 1.56
CPSF4-209ENST00000465132 COL14A1Q05707 1796 aaKnown RBP24.82■■□□□ 1.56
CPSF4-209ENST00000465132 A0A0G2JS52 829 aa24.8■■□□□ 1.56
CPSF4-209ENST00000465132 MYT1Q01538 1121 aa24.8■■□□□ 1.56
CPSF4-209ENST00000465132 FAM98CQ17RN3 349 aaKnown RBP24.8■■□□□ 1.56
CPSF4-209ENST00000465132 CDK19Q9BWU1 502 aa24.78■■□□□ 1.56
CPSF4-209ENST00000465132 SRCAPQ6ZRS2 3230 aa24.78■■□□□ 1.56
CPSF4-209ENST00000465132 CRYBG1Q9Y4K1 1723 aa24.78■■□□□ 1.56
CPSF4-209ENST00000465132 ZEB1P37275 1124 aaPredicted RBP24.77■■□□□ 1.56
CPSF4-209ENST00000465132 PRDM11Q9NQV5 511 aa24.77■■□□□ 1.56
CPSF4-209ENST00000465132 ITSN1Q15811 1721 aa24.76■■□□□ 1.55
CPSF4-209ENST00000465132 KIAA1210Q9ULL0 1709 aa24.76■■□□□ 1.55
CPSF4-209ENST00000465132 SPATA31A5Q5VU36 1347 aa24.76■■□□□ 1.55
CPSF4-209ENST00000465132 SPATA31A7Q8IWB4 1347 aa24.76■■□□□ 1.55
CPSF4-209ENST00000465132 POLR3AO14802 1390 aaPredicted RBP24.73■■□□□ 1.55
CPSF4-209ENST00000465132 KIAA0232Q92628 1395 aa24.72■■□□□ 1.55
CPSF4-209ENST00000465132 CCDC61Q9Y6R9 512 aa24.72■■□□□ 1.55
CPSF4-209ENST00000465132 ACEP12821 1306 aa24.71■■□□□ 1.55
CPSF4-209ENST00000465132 NBPF1Q3BBV0 1214 aa24.71■■□□□ 1.55
CPSF4-209ENST00000465132 NBPF8Q3BBV2 869 aa24.71■■□□□ 1.55
CPSF4-209ENST00000465132 PLEKHG3A1L390 1219 aa24.7■■□□□ 1.54
CPSF4-209ENST00000465132 TOPAZ1Q8N9V7 1692 aa24.69■■□□□ 1.54
CPSF4-209ENST00000465132 BAG6P46379 1132 aa24.69■■□□□ 1.54
CPSF4-209ENST00000465132 CHRNA2Q15822 529 aa24.69■■□□□ 1.54
CPSF4-209ENST00000465132 NUTM2GQ5VZR2 741 aa24.69■■□□□ 1.54
CPSF4-209ENST00000465132 SPATA31A1Q5TZJ5 1347 aa24.67■■□□□ 1.54
CPSF4-209ENST00000465132 THSD7AQ9UPZ6 1657 aa24.67■■□□□ 1.54
CPSF4-209ENST00000465132 ZC3H6P61129 1189 aaKnown RBP24.67■■□□□ 1.54
CPSF4-209ENST00000465132 FAM182BQ5T319 152 aa24.67■■□□□ 1.54
CPSF4-209ENST00000465132 PHRF1Q9P1Y6 1649 aaKnown RBP24.67■■□□□ 1.54
CPSF4-209ENST00000465132 STRN4Q9NRL3 753 aa24.65■■□□□ 1.54
CPSF4-209ENST00000465132 TRPM1Q7Z4N2 1603 aa24.64■■□□□ 1.54
CPSF4-209ENST00000465132 ABTB2Q8N961 1025 aa24.63■■□□□ 1.53
CPSF4-209ENST00000465132 CENPJQ9HC77 1338 aaPredicted RBP24.62■■□□□ 1.53
CPSF4-209ENST00000465132 SRPK2P78362 688 aaKnown RBP24.62■■□□□ 1.53
CPSF4-209ENST00000465132 ROCK2O75116 1388 aaKnown RBP24.62■■□□□ 1.53
CPSF4-209ENST00000465132 EN1Q05925 392 aaPredicted RBP24.6■■□□□ 1.53
CPSF4-209ENST00000465132 RGPD1P0DJD0 1748 aa24.6■■□□□ 1.53
CPSF4-209ENST00000465132 PPIP5K1Q6PFW1 1433 aa24.6■■□□□ 1.53
CPSF4-209ENST00000465132 USP19O94966 1318 aa24.6■■□□□ 1.53
CPSF4-209ENST00000465132 NRKQ7Z2Y5 1582 aa24.59■■□□□ 1.53
CPSF4-209ENST00000465132 CPDO75976 1380 aa24.59■■□□□ 1.53
CPSF4-209ENST00000465132 EVA1CP58658 441 aa24.59■■□□□ 1.53
CPSF4-209ENST00000465132 CABP2Q9NPB3 220 aa24.59■■□□□ 1.53
CPSF4-209ENST00000465132 SSH2Q76I76 1423 aa24.59■■□□□ 1.53
CPSF4-209ENST00000465132 PSDA5PKW4 1024 aaPredicted RBP24.58■■□□□ 1.53
CPSF4-209ENST00000465132 USP35Q9P2H5 1018 aa24.58■■□□□ 1.53
CPSF4-209ENST00000465132 DISP2A7MBM2 1401 aa24.58■■□□□ 1.53
CPSF4-209ENST00000465132 CAMTA1Q9Y6Y1 1673 aa24.56■■□□□ 1.52
CPSF4-209ENST00000465132 FAM196AQ6ZSG2 479 aa24.56■■□□□ 1.52
CPSF4-209ENST00000465132 BARGINQ6ZT62 677 aa24.56■■□□□ 1.52
CPSF4-209ENST00000465132 NLRP13Q86W25 1043 aa24.56■■□□□ 1.52
CPSF4-209ENST00000465132 CARD11Q9BXL7 1154 aa24.56■■□□□ 1.52
CPSF4-209ENST00000465132 LRP5O75197 1615 aa24.55■■□□□ 1.52
CPSF4-209ENST00000465132 LARP1Q6PKG0 1096 aaKnown RBP24.55■■□□□ 1.52
CPSF4-209ENST00000465132 BRD4O60885 1362 aaPredicted RBP24.54■■□□□ 1.52
CPSF4-209ENST00000465132 GCP02774 474 aa24.54■■□□□ 1.52
CPSF4-209ENST00000465132 TNS1Q9HBL0 1735 aaKnown RBP24.54■■□□□ 1.52
CPSF4-209ENST00000465132 LMO7Q8WWI1 1683 aa24.53■■□□□ 1.52
CPSF4-209ENST00000465132 TRIM37O94972 964 aa24.52■■□□□ 1.52
CPSF4-209ENST00000465132 CABP1Q9NZU7 370 aa24.52■■□□□ 1.52
CPSF4-209ENST00000465132 QRICH2Q9H0J4 1663 aa24.52■■□□□ 1.52
CPSF4-209ENST00000465132 SLC24A1O60721 1099 aa24.51■■□□□ 1.51
CPSF4-209ENST00000465132 EZH2Q15910 746 aaKnown RBP24.51■■□□□ 1.51
CPSF4-209ENST00000465132 TCP11L2Q8N4U5 519 aa24.51■■□□□ 1.51
CPSF4-209ENST00000465132 PDE3BQ13370 1112 aa24.5■■□□□ 1.51
CPSF4-209ENST00000465132 CAMKK2Q96RR4 588 aa24.5■■□□□ 1.51
CPSF4-209ENST00000465132 USP6P35125 1406 aa24.5■■□□□ 1.51
CPSF4-209ENST00000465132 R3HDM1Q15032 1099 aaKnown RBP24.48■■□□□ 1.51
CPSF4-209ENST00000465132 THRAP3Q9Y2W1 955 aaKnown RBP24.48■■□□□ 1.51
CPSF4-209ENST00000465132 COL5A2P05997 1499 aaPredicted RBP24.47■■□□□ 1.51
CPSF4-209ENST00000465132 APBA3O96018 575 aa24.47■■□□□ 1.51
CPSF4-209ENST00000465132 NLRP6P59044 892 aa24.47■■□□□ 1.51
CPSF4-209ENST00000465132 EVC2Q86UK5 1308 aa24.46■■□□□ 1.51
CPSF4-209ENST00000465132 PARD3Q8TEW0 1356 aa24.45■■□□□ 1.5
CPSF4-209ENST00000465132 SLIT3O75094 1523 aa24.44■■□□□ 1.5
CPSF4-209ENST00000465132 AATKQ6ZMQ8 1374 aa24.43■■□□□ 1.5
CPSF4-209ENST00000465132 ZBTB7CA1YPR0 619 aa24.43■■□□□ 1.5
CPSF4-209ENST00000465132 CRB1P82279 1406 aa24.43■■□□□ 1.5
CPSF4-209ENST00000465132 EIF4G2P78344 907 aaKnown RBP eCLIP24.4■■□□□ 1.5
CPSF4-209ENST00000465132 PIK3C2AO00443 1686 aa24.39■■□□□ 1.49
CPSF4-209ENST00000465132 PARP4Q9UKK3 1724 aaKnown RBP24.38■■□□□ 1.49
CPSF4-209ENST00000465132 ZNF692Q9BU19 519 aaPredicted RBP24.38■■□□□ 1.49
CPSF4-209ENST00000465132 USP47Q96K76 1375 aa24.38■■□□□ 1.49
CPSF4-209ENST00000465132 TTC21BQ7Z4L5 1316 aa24.37■■□□□ 1.49
CPSF4-209ENST00000465132 C11orf95C9JLR9 678 aaPredicted RBP24.36■■□□□ 1.49
CPSF4-209ENST00000465132 TOM1L2Q6ZVM7 507 aa24.35■■□□□ 1.49
CPSF4-209ENST00000465132 AXIN2Q9Y2T1 843 aa24.35■■□□□ 1.49
Retrieved 100 of 20,778 RNA–protein pairs in 13.3 ms