RNA–Protein interactions for RNA: ENST00000463818.1

SF3A1-205, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 2

Gene SF3A1, Length 583 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-205ENST00000463818 CABP2Q9NPB3 220 aa27.09■■□□□ 1.93
SF3A1-205ENST00000463818 ONECUT3O60422 494 aaPredicted RBP27.08■■□□□ 1.93
SF3A1-205ENST00000463818 NUTM2GQ5VZR2 741 aa27.07■■□□□ 1.92
SF3A1-205ENST00000463818 POLR3AO14802 1390 aaPredicted RBP27.07■■□□□ 1.92
SF3A1-205ENST00000463818 TNKS1BP1Q9C0C2 1729 aaKnown RBP27.07■■□□□ 1.92
SF3A1-205ENST00000463818 GLI3P10071 1580 aa27.06■■□□□ 1.92
SF3A1-205ENST00000463818 ALS2Q96Q42 1657 aa27.05■■□□□ 1.92
SF3A1-205ENST00000463818 CCDC125Q86Z20 511 aa27.04■■□□□ 1.92
SF3A1-205ENST00000463818 PRDM11Q9NQV5 511 aa27.04■■□□□ 1.92
SF3A1-205ENST00000463818 ABTB2Q8N961 1025 aa27.01■■□□□ 1.91
SF3A1-205ENST00000463818 ABCA3Q99758 1704 aa27.01■■□□□ 1.91
SF3A1-205ENST00000463818 ZC3H6P61129 1189 aaKnown RBP27■■□□□ 1.91
SF3A1-205ENST00000463818 CABP1Q9NZU7 370 aa27■■□□□ 1.91
SF3A1-205ENST00000463818 CHRNA2Q15822 529 aa26.99■■□□□ 1.91
SF3A1-205ENST00000463818 FAM98CQ17RN3 349 aaKnown RBP26.99■■□□□ 1.91
SF3A1-205ENST00000463818 ITSN1Q15811 1721 aa26.99■■□□□ 1.91
SF3A1-205ENST00000463818 PPIP5K1Q6PFW1 1433 aa26.99■■□□□ 1.91
SF3A1-205ENST00000463818 ROCK2O75116 1388 aaKnown RBP26.98■■□□□ 1.91
SF3A1-205ENST00000463818 KIAA0232Q92628 1395 aa26.98■■□□□ 1.91
SF3A1-205ENST00000463818 KRT27Q7Z3Y8 459 aa26.98■■□□□ 1.91
SF3A1-205ENST00000463818 NWD2Q9ULI1 1742 aa26.98■■□□□ 1.91
SF3A1-205ENST00000463818 PLCH1Q4KWH8 1693 aa26.98■■□□□ 1.91
SF3A1-205ENST00000463818 A0A0G2JS52 829 aa26.97■■□□□ 1.91
SF3A1-205ENST00000463818 MYT1Q01538 1121 aa26.97■■□□□ 1.91
SF3A1-205ENST00000463818 EVC2Q86UK5 1308 aa26.96■■□□□ 1.91
SF3A1-205ENST00000463818 SPATA31A5Q5VU36 1347 aa26.95■■□□□ 1.91
SF3A1-205ENST00000463818 SPATA31A7Q8IWB4 1347 aa26.95■■□□□ 1.91
SF3A1-205ENST00000463818 NLRP13Q86W25 1043 aa26.94■■□□□ 1.9
SF3A1-205ENST00000463818 COL14A1Q05707 1796 aaKnown RBP26.93■■□□□ 1.9
SF3A1-205ENST00000463818 TOPAZ1Q8N9V7 1692 aa26.92■■□□□ 1.9
SF3A1-205ENST00000463818 STRN4Q9NRL3 753 aa26.92■■□□□ 1.9
SF3A1-205ENST00000463818 TRIM26Q12899 539 aaPredicted RBP26.9■■□□□ 1.9
SF3A1-205ENST00000463818 USP19O94966 1318 aa26.9■■□□□ 1.9
SF3A1-205ENST00000463818 BRD4O60885 1362 aaPredicted RBP26.89■■□□□ 1.9
SF3A1-205ENST00000463818 GCP02774 474 aa26.89■■□□□ 1.9
SF3A1-205ENST00000463818 EVA1CP58658 441 aa26.89■■□□□ 1.9
SF3A1-205ENST00000463818 TRPM1Q7Z4N2 1603 aa26.89■■□□□ 1.9
SF3A1-205ENST00000463818 BLMP54132 1417 aaPredicted RBP26.89■■□□□ 1.89
SF3A1-205ENST00000463818 SF3B2Q13435 895 aaKnown RBP26.88■■□□□ 1.89
SF3A1-205ENST00000463818 ZRANB1Q9UGI0 708 aa26.88■■□□□ 1.89
SF3A1-205ENST00000463818 CRYBG1Q9Y4K1 1723 aa26.87■■□□□ 1.89
SF3A1-205ENST00000463818 QRICH2Q9H0J4 1663 aa26.87■■□□□ 1.89
SF3A1-205ENST00000463818 NLRP6P59044 892 aa26.87■■□□□ 1.89
SF3A1-205ENST00000463818 CARD11Q9BXL7 1154 aa26.87■■□□□ 1.89
SF3A1-205ENST00000463818 NRAPQ86VF7 1730 aa26.87■■□□□ 1.89
SF3A1-205ENST00000463818 SPATA31A1Q5TZJ5 1347 aa26.87■■□□□ 1.89
SF3A1-205ENST00000463818 DEFB132Q7Z7B7 95 aa26.86■■□□□ 1.89
SF3A1-205ENST00000463818 ZNF692Q9BU19 519 aaPredicted RBP26.85■■□□□ 1.89
SF3A1-205ENST00000463818 BRWD3Q6RI45 1802 aa26.85■■□□□ 1.89
SF3A1-205ENST00000463818 USP6P35125 1406 aa26.84■■□□□ 1.89
SF3A1-205ENST00000463818 EP400Q96L91 3159 aa26.84■■□□□ 1.89
SF3A1-205ENST00000463818 CPDO75976 1380 aa26.84■■□□□ 1.89
SF3A1-205ENST00000463818 TONSLQ96HA7 1378 aa26.84■■□□□ 1.89
SF3A1-205ENST00000463818 USP35Q9P2H5 1018 aa26.83■■□□□ 1.89
SF3A1-205ENST00000463818 FAM182BQ5T319 152 aa26.82■■□□□ 1.88
SF3A1-205ENST00000463818 PHRF1Q9P1Y6 1649 aaKnown RBP26.8■■□□□ 1.88
SF3A1-205ENST00000463818 LARP1Q6PKG0 1096 aaKnown RBP26.8■■□□□ 1.88
SF3A1-205ENST00000463818 SSH2Q76I76 1423 aa26.8■■□□□ 1.88
SF3A1-205ENST00000463818 ZBTB7CA1YPR0 619 aa26.79■■□□□ 1.88
SF3A1-205ENST00000463818 TTC21BQ7Z4L5 1316 aa26.79■■□□□ 1.88
SF3A1-205ENST00000463818 CAMTA1Q9Y6Y1 1673 aa26.77■■□□□ 1.88
SF3A1-205ENST00000463818 BARGINQ6ZT62 677 aa26.77■■□□□ 1.88
SF3A1-205ENST00000463818 NRKQ7Z2Y5 1582 aa26.76■■□□□ 1.87
SF3A1-205ENST00000463818 TCP11L2Q8N4U5 519 aa26.75■■□□□ 1.87
SF3A1-205ENST00000463818 BAG6P46379 1132 aa26.74■■□□□ 1.87
SF3A1-205ENST00000463818 SBNO2Q9Y2G9 1366 aa26.73■■□□□ 1.87
SF3A1-205ENST00000463818 CPSF1Q10570 1443 aaKnown RBP26.72■■□□□ 1.87
SF3A1-205ENST00000463818 TTC21AQ8NDW8 1320 aa26.71■■□□□ 1.87
SF3A1-205ENST00000463818 PDE3BQ13370 1112 aa26.71■■□□□ 1.87
SF3A1-205ENST00000463818 THRAP3Q9Y2W1 955 aaKnown RBP26.71■■□□□ 1.87
SF3A1-205ENST00000463818 AATKQ6ZMQ8 1374 aa26.71■■□□□ 1.87
SF3A1-205ENST00000463818 KTN1Q86UP2 1357 aaKnown RBP26.71■■□□□ 1.87
SF3A1-205ENST00000463818 FAM196AQ6ZSG2 479 aa26.7■■□□□ 1.86
SF3A1-205ENST00000463818 TMC1Q8TDI8 760 aa26.7■■□□□ 1.86
SF3A1-205ENST00000463818 THSD7AQ9UPZ6 1657 aa26.7■■□□□ 1.86
SF3A1-205ENST00000463818 KCNH5Q8NCM2 988 aa26.69■■□□□ 1.86
SF3A1-205ENST00000463818 SOX12O15370 315 aa26.68■■□□□ 1.86
SF3A1-205ENST00000463818 EN1Q05925 392 aaPredicted RBP26.68■■□□□ 1.86
SF3A1-205ENST00000463818 ARHGEF25Q86VW2 580 aa26.68■■□□□ 1.86
SF3A1-205ENST00000463818 AXIN2Q9Y2T1 843 aa26.68■■□□□ 1.86
SF3A1-205ENST00000463818 SUGP2Q8IX01 1082 aaKnown RBP eCLIP26.67■■□□□ 1.86
SF3A1-205ENST00000463818 SLC12A5Q9H2X9 1139 aa26.67■■□□□ 1.86
SF3A1-205ENST00000463818 COL5A2P05997 1499 aaPredicted RBP26.67■■□□□ 1.86
SF3A1-205ENST00000463818 LMO7Q8WWI1 1683 aa26.66■■□□□ 1.86
SF3A1-205ENST00000463818 SLIT3O75094 1523 aa26.66■■□□□ 1.86
SF3A1-205ENST00000463818 TRIM37O94972 964 aa26.66■■□□□ 1.86
SF3A1-205ENST00000463818 TOM1L2Q6ZVM7 507 aa26.64■■□□□ 1.86
SF3A1-205ENST00000463818 HDGFL2Q7Z4V5 671 aaPredicted RBP26.64■■□□□ 1.86
SF3A1-205ENST00000463818 PUS7Q96PZ0 661 aaKnown RBP26.64■■□□□ 1.86
SF3A1-205ENST00000463818 ST20-MTHFSA0A0A6YYL1 179 aa26.63■■□□□ 1.85
SF3A1-205ENST00000463818 CRB1P82279 1406 aa26.63■■□□□ 1.85
SF3A1-205ENST00000463818 PIK3C2AO00443 1686 aa26.63■■□□□ 1.85
SF3A1-205ENST00000463818 TESK2Q96S53 571 aa26.61■■□□□ 1.85
SF3A1-205ENST00000463818 NME9Q86XW9 330 aa26.6■■□□□ 1.85
SF3A1-205ENST00000463818 APBA3O96018 575 aa26.59■■□□□ 1.85
SF3A1-205ENST00000463818 EZH2Q15910 746 aaKnown RBP26.59■■□□□ 1.85
SF3A1-205ENST00000463818 TERF2IPQ9NYB0 399 aa26.59■■□□□ 1.85
SF3A1-205ENST00000463818 WDR17Q8IZU2 1322 aa26.59■■□□□ 1.85
SF3A1-205ENST00000463818 CD163L1Q9NR16 1453 aa26.58■■□□□ 1.85
SF3A1-205ENST00000463818 USP31Q70CQ4 1352 aa26.58■■□□□ 1.84
Retrieved 100 of 20,778 RNA–protein pairs in 17.3 ms