RNA–Protein interactions for RNA: ENST00000463172.5

HDAC1-203, Transcript of histone deacetylase 1, humanhuman

TSL 2

Gene HDAC1, Length 895 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC1-203ENST00000463172 UNC5CLQ8IV45 518 aa18.6■□□□□ 0.57
HDAC1-203ENST00000463172 CABP2Q9NPB3 220 aa18.6■□□□□ 0.57
HDAC1-203ENST00000463172 NWD2Q9ULI1 1742 aa18.6■□□□□ 0.57
HDAC1-203ENST00000463172 NBPF8Q3BBV2 869 aa18.59■□□□□ 0.57
HDAC1-203ENST00000463172 BCL9LQ86UU0 1499 aa18.58■□□□□ 0.57
HDAC1-203ENST00000463172 RALGAPBQ86X10 1494 aa18.58■□□□□ 0.57
HDAC1-203ENST00000463172 BRD4O60885 1362 aaPredicted RBP18.58■□□□□ 0.57
HDAC1-203ENST00000463172 SLIT2O94813 1529 aa18.58■□□□□ 0.56
HDAC1-203ENST00000463172 RGS12O14924 1447 aa18.57■□□□□ 0.56
HDAC1-203ENST00000463172 PLCH1Q4KWH8 1693 aa18.57■□□□□ 0.56
HDAC1-203ENST00000463172 GJD4Q96KN9 370 aaPredicted RBP18.56■□□□□ 0.56
HDAC1-203ENST00000463172 COL14A1Q05707 1796 aaKnown RBP18.55■□□□□ 0.56
HDAC1-203ENST00000463172 SBNO2Q9Y2G9 1366 aa18.55■□□□□ 0.56
HDAC1-203ENST00000463172 CLSPNQ9HAW4 1339 aa18.54■□□□□ 0.56
HDAC1-203ENST00000463172 SLC24A1O60721 1099 aa18.54■□□□□ 0.56
HDAC1-203ENST00000463172 ABTB2Q8N961 1025 aa18.54■□□□□ 0.56
HDAC1-203ENST00000463172 CCDC9Q9Y3X0 531 aaKnown RBP18.54■□□□□ 0.56
HDAC1-203ENST00000463172 ATAD2Q6PL18 1390 aa18.54■□□□□ 0.56
HDAC1-203ENST00000463172 CABP1Q9NZU7 370 aa18.53■□□□□ 0.56
HDAC1-203ENST00000463172 FAM83GA6ND36 823 aa18.52■□□□□ 0.56
HDAC1-203ENST00000463172 VPS72Q15906 364 aa18.52■□□□□ 0.56
HDAC1-203ENST00000463172 NLRP13Q86W25 1043 aa18.52■□□□□ 0.56
HDAC1-203ENST00000463172 ZNF692Q9BU19 519 aaPredicted RBP18.52■□□□□ 0.56
HDAC1-203ENST00000463172 PCGF6Q9BYE7 350 aa18.52■□□□□ 0.56
HDAC1-203ENST00000463172 PRDM11Q9NQV5 511 aa18.52■□□□□ 0.56
HDAC1-203ENST00000463172 CRYBG1Q9Y4K1 1723 aa18.52■□□□□ 0.55
HDAC1-203ENST00000463172 TIMELESSQ9UNS1 1208 aa18.51■□□□□ 0.55
HDAC1-203ENST00000463172 PHRF1Q9P1Y6 1649 aaKnown RBP18.5■□□□□ 0.55
HDAC1-203ENST00000463172 UPF1Q92900 1129 aaKnown RBP eCLIP18.5■□□□□ 0.55
HDAC1-203ENST00000463172 BTG4Q9NY30 223 aa18.5■□□□□ 0.55
HDAC1-203ENST00000463172 NUTM2GQ5VZR2 741 aa18.49■□□□□ 0.55
HDAC1-203ENST00000463172 USP6P35125 1406 aa18.49■□□□□ 0.55
HDAC1-203ENST00000463172 GLI3P10071 1580 aa18.47■□□□□ 0.55
HDAC1-203ENST00000463172 KIAA0232Q92628 1395 aa18.46■□□□□ 0.55
HDAC1-203ENST00000463172 NRAPQ86VF7 1730 aa18.46■□□□□ 0.55
HDAC1-203ENST00000463172 AKAP12Q02952 1782 aa18.45■□□□□ 0.54
HDAC1-203ENST00000463172 A0A0G2JS52 829 aa18.44■□□□□ 0.54
HDAC1-203ENST00000463172 NLRP6P59044 892 aa18.44■□□□□ 0.54
HDAC1-203ENST00000463172 ZC3H6P61129 1189 aaKnown RBP18.44■□□□□ 0.54
HDAC1-203ENST00000463172 MYT1Q01538 1121 aa18.44■□□□□ 0.54
HDAC1-203ENST00000463172 PUS7Q96PZ0 661 aaKnown RBP18.44■□□□□ 0.54
HDAC1-203ENST00000463172 USP19O94966 1318 aa18.44■□□□□ 0.54
HDAC1-203ENST00000463172 TTC21AQ8NDW8 1320 aa18.44■□□□□ 0.54
HDAC1-203ENST00000463172 NRKQ7Z2Y5 1582 aa18.43■□□□□ 0.54
HDAC1-203ENST00000463172 HDGFL2Q7Z4V5 671 aaPredicted RBP18.43■□□□□ 0.54
HDAC1-203ENST00000463172 CPDO75976 1380 aa18.42■□□□□ 0.54
HDAC1-203ENST00000463172 KTN1Q86UP2 1357 aaKnown RBP18.42■□□□□ 0.54
HDAC1-203ENST00000463172 GCP02774 474 aa18.42■□□□□ 0.54
HDAC1-203ENST00000463172 EVA1CP58658 441 aa18.42■□□□□ 0.54
HDAC1-203ENST00000463172 TMC1Q8TDI8 760 aa18.42■□□□□ 0.54
HDAC1-203ENST00000463172 CCDC125Q86Z20 511 aa18.41■□□□□ 0.54
HDAC1-203ENST00000463172 SEPT12Q8IYM1 358 aa18.41■□□□□ 0.54
HDAC1-203ENST00000463172 ST20-MTHFSA0A0A6YYL1 179 aa18.4■□□□□ 0.54
HDAC1-203ENST00000463172 ONECUT3O60422 494 aaPredicted RBP18.4■□□□□ 0.54
HDAC1-203ENST00000463172 CHRNA2Q15822 529 aa18.4■□□□□ 0.54
HDAC1-203ENST00000463172 KCNH5Q8NCM2 988 aa18.4■□□□□ 0.54
HDAC1-203ENST00000463172 CCER1Q8TC90 406 aaPredicted RBP18.4■□□□□ 0.54
HDAC1-203ENST00000463172 TERF2IPQ9NYB0 399 aa18.4■□□□□ 0.54
HDAC1-203ENST00000463172 TTC21BQ7Z4L5 1316 aa18.4■□□□□ 0.54
HDAC1-203ENST00000463172 NINLQ9Y2I6 1382 aa18.4■□□□□ 0.54
HDAC1-203ENST00000463172 CPSF1Q10570 1443 aaKnown RBP18.4■□□□□ 0.54
HDAC1-203ENST00000463172 SSH2Q76I76 1423 aa18.4■□□□□ 0.54
HDAC1-203ENST00000463172 STRN4Q9NRL3 753 aa18.39■□□□□ 0.53
HDAC1-203ENST00000463172 MON2Q7Z3U7 1717 aa18.39■□□□□ 0.53
HDAC1-203ENST00000463172 SPATA31A5Q5VU36 1347 aa18.39■□□□□ 0.53
HDAC1-203ENST00000463172 SPATA31A7Q8IWB4 1347 aa18.39■□□□□ 0.53
HDAC1-203ENST00000463172 BRWD3Q6RI45 1802 aa18.39■□□□□ 0.53
HDAC1-203ENST00000463172 PIK3C2AO00443 1686 aa18.38■□□□□ 0.53
HDAC1-203ENST00000463172 FAM98CQ17RN3 349 aaKnown RBP18.38■□□□□ 0.53
HDAC1-203ENST00000463172 USP47Q96K76 1375 aa18.38■□□□□ 0.53
HDAC1-203ENST00000463172 TMF1P82094 1093 aa18.37■□□□□ 0.53
HDAC1-203ENST00000463172 CDCA8Q53HL2 280 aa18.37■□□□□ 0.53
HDAC1-203ENST00000463172 KRT27Q7Z3Y8 459 aa18.37■□□□□ 0.53
HDAC1-203ENST00000463172 SLIT3O75094 1523 aa18.37■□□□□ 0.53
HDAC1-203ENST00000463172 ZBTB7CA1YPR0 619 aa18.36■□□□□ 0.53
HDAC1-203ENST00000463172 SF3B2Q13435 895 aaKnown RBP18.35■□□□□ 0.53
HDAC1-203ENST00000463172 SPATA31A1Q5TZJ5 1347 aa18.34■□□□□ 0.53
HDAC1-203ENST00000463172 TESK2Q96S53 571 aa18.34■□□□□ 0.53
HDAC1-203ENST00000463172 LMO7Q8WWI1 1683 aa18.34■□□□□ 0.53
HDAC1-203ENST00000463172 EDC4Q6P2E9 1401 aaKnown RBP18.33■□□□□ 0.53
HDAC1-203ENST00000463172 AATKQ6ZMQ8 1374 aa18.33■□□□□ 0.53
HDAC1-203ENST00000463172 EP400Q96L91 3159 aa18.33■□□□□ 0.53
HDAC1-203ENST00000463172 SUGP2Q8IX01 1082 aaKnown RBP eCLIP18.33■□□□□ 0.52
HDAC1-203ENST00000463172 SLC12A5Q9H2X9 1139 aa18.33■□□□□ 0.52
HDAC1-203ENST00000463172 CAMTA1Q9Y6Y1 1673 aa18.32■□□□□ 0.52
HDAC1-203ENST00000463172 THRAP3Q9Y2W1 955 aaKnown RBP18.32■□□□□ 0.52
HDAC1-203ENST00000463172 BLMP54132 1417 aaPredicted RBP18.31■□□□□ 0.52
HDAC1-203ENST00000463172 BARGINQ6ZT62 677 aa18.3■□□□□ 0.52
HDAC1-203ENST00000463172 TCP11L2Q8N4U5 519 aa18.3■□□□□ 0.52
HDAC1-203ENST00000463172 USP35Q9P2H5 1018 aa18.3■□□□□ 0.52
HDAC1-203ENST00000463172 CD163L1Q9NR16 1453 aa18.3■□□□□ 0.52
HDAC1-203ENST00000463172 THSD7AQ9UPZ6 1657 aa18.3■□□□□ 0.52
HDAC1-203ENST00000463172 A0A1W2PP64 1363 aa18.3■□□□□ 0.52
HDAC1-203ENST00000463172 USP31Q70CQ4 1352 aa18.3■□□□□ 0.52
HDAC1-203ENST00000463172 COL5A2P05997 1499 aaPredicted RBP18.29■□□□□ 0.52
HDAC1-203ENST00000463172 SOX12O15370 315 aa18.29■□□□□ 0.52
HDAC1-203ENST00000463172 USP54Q70EL1 1684 aa18.28■□□□□ 0.52
HDAC1-203ENST00000463172 LARP1Q6PKG0 1096 aaKnown RBP18.28■□□□□ 0.52
HDAC1-203ENST00000463172 CRB1P82279 1406 aa18.28■□□□□ 0.52
HDAC1-203ENST00000463172 ARHGEF25Q86VW2 580 aa18.27■□□□□ 0.52
Retrieved 100 of 20,778 RNA–protein pairs in 604.6 ms