RNA–Protein interactions for RNA: ENST00000462482.1

SKA3-204, Transcript of spindle and kinetochore associated complex subunit 3, humanhuman

TSL 2

Gene SKA3, Length 750 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SKA3-204ENST00000462482 PLCH1Q4KWH8 1693 aa22.24■■□□□ 1.15
SKA3-204ENST00000462482 DEFB132Q7Z7B7 95 aa22.24■■□□□ 1.15
SKA3-204ENST00000462482 ATP7BP35670 1465 aa22.23■■□□□ 1.15
SKA3-204ENST00000462482 BAG6P46379 1132 aa22.23■■□□□ 1.15
SKA3-204ENST00000462482 TRPM3Q9HCF6 1732 aaPredicted RBP22.22■■□□□ 1.15
SKA3-204ENST00000462482 ABCA3Q99758 1704 aa22.21■■□□□ 1.15
SKA3-204ENST00000462482 SRPK2P78362 688 aaKnown RBP22.21■■□□□ 1.15
SKA3-204ENST00000462482 NBPF8Q3BBV2 869 aa22.21■■□□□ 1.15
SKA3-204ENST00000462482 ACEP12821 1306 aa22.21■■□□□ 1.15
SKA3-204ENST00000462482 SPATA31A5Q5VU36 1347 aa22.21■■□□□ 1.15
SKA3-204ENST00000462482 SPATA31A7Q8IWB4 1347 aa22.21■■□□□ 1.15
SKA3-204ENST00000462482 NUTM2GQ5VZR2 741 aa22.2■■□□□ 1.14
SKA3-204ENST00000462482 COL14A1Q05707 1796 aaKnown RBP22.2■■□□□ 1.14
SKA3-204ENST00000462482 PLEKHG3A1L390 1219 aa22.19■■□□□ 1.14
SKA3-204ENST00000462482 NBPF1Q3BBV0 1214 aa22.19■■□□□ 1.14
SKA3-204ENST00000462482 KIAA0232Q92628 1395 aa22.19■■□□□ 1.14
SKA3-204ENST00000462482 ALS2Q96Q42 1657 aa22.19■■□□□ 1.14
SKA3-204ENST00000462482 POLR3AO14802 1390 aaPredicted RBP22.18■■□□□ 1.14
SKA3-204ENST00000462482 CENPJQ9HC77 1338 aaPredicted RBP22.18■■□□□ 1.14
SKA3-204ENST00000462482 ZC3H6P61129 1189 aaKnown RBP22.18■■□□□ 1.14
SKA3-204ENST00000462482 ABTB2Q8N961 1025 aa22.18■■□□□ 1.14
SKA3-204ENST00000462482 STRN4Q9NRL3 753 aa22.18■■□□□ 1.14
SKA3-204ENST00000462482 ARHGEF28Q8N1W1 1705 aaKnown RBP22.17■■□□□ 1.14
SKA3-204ENST00000462482 EVA1CP58658 441 aa22.17■■□□□ 1.14
SKA3-204ENST00000462482 CHRNA2Q15822 529 aa22.17■■□□□ 1.14
SKA3-204ENST00000462482 ITSN1Q15811 1721 aa22.15■■□□□ 1.14
SKA3-204ENST00000462482 NLRP13Q86W25 1043 aa22.14■■□□□ 1.13
SKA3-204ENST00000462482 SPATA31A1Q5TZJ5 1347 aa22.13■■□□□ 1.13
SKA3-204ENST00000462482 EP400Q96L91 3159 aa22.13■■□□□ 1.13
SKA3-204ENST00000462482 NRAPQ86VF7 1730 aa22.12■■□□□ 1.13
SKA3-204ENST00000462482 KIAA1210Q9ULL0 1709 aa22.11■■□□□ 1.13
SKA3-204ENST00000462482 BRWD3Q6RI45 1802 aa22.11■■□□□ 1.13
SKA3-204ENST00000462482 CABP2Q9NPB3 220 aa22.11■■□□□ 1.13
SKA3-204ENST00000462482 USP35Q9P2H5 1018 aa22.11■■□□□ 1.13
SKA3-204ENST00000462482 PPIP5K1Q6PFW1 1433 aa22.11■■□□□ 1.13
SKA3-204ENST00000462482 FAM182BQ5T319 152 aa22.1■■□□□ 1.13
SKA3-204ENST00000462482 BRD4O60885 1362 aaPredicted RBP22.1■■□□□ 1.13
SKA3-204ENST00000462482 FAM196AQ6ZSG2 479 aa22.09■■□□□ 1.13
SKA3-204ENST00000462482 L3MBTL2Q969R5 705 aa22.09■■□□□ 1.13
SKA3-204ENST00000462482 PDE3BQ13370 1112 aa22.08■■□□□ 1.13
SKA3-204ENST00000462482 EN1Q05925 392 aaPredicted RBP22.07■■□□□ 1.12
SKA3-204ENST00000462482 USP19O94966 1318 aa22.06■■□□□ 1.12
SKA3-204ENST00000462482 GCP02774 474 aa22.06■■□□□ 1.12
SKA3-204ENST00000462482 CABP1Q9NZU7 370 aa22.06■■□□□ 1.12
SKA3-204ENST00000462482 CPDO75976 1380 aa22.06■■□□□ 1.12
SKA3-204ENST00000462482 SSH2Q76I76 1423 aa22.06■■□□□ 1.12
SKA3-204ENST00000462482 EVC2Q86UK5 1308 aa22.06■■□□□ 1.12
SKA3-204ENST00000462482 BARGINQ6ZT62 677 aa22.05■■□□□ 1.12
SKA3-204ENST00000462482 ZBTB7CA1YPR0 619 aa22.04■■□□□ 1.12
SKA3-204ENST00000462482 PSDA5PKW4 1024 aaPredicted RBP22.04■■□□□ 1.12
SKA3-204ENST00000462482 NLRP6P59044 892 aa22.04■■□□□ 1.12
SKA3-204ENST00000462482 NEUROD1Q13562 356 aa22.04■■□□□ 1.12
SKA3-204ENST00000462482 TCP11L2Q8N4U5 519 aa22.04■■□□□ 1.12
SKA3-204ENST00000462482 CRYBG1Q9Y4K1 1723 aa22.03■■□□□ 1.12
SKA3-204ENST00000462482 LARP1Q6PKG0 1096 aaKnown RBP22.03■■□□□ 1.12
SKA3-204ENST00000462482 TOPAZ1Q8N9V7 1692 aa22.03■■□□□ 1.12
SKA3-204ENST00000462482 TRIM37O94972 964 aa22.02■■□□□ 1.12
SKA3-204ENST00000462482 THRAP3Q9Y2W1 955 aaKnown RBP22.02■■□□□ 1.12
SKA3-204ENST00000462482 PHRF1Q9P1Y6 1649 aaKnown RBP22.02■■□□□ 1.11
SKA3-204ENST00000462482 THSD7AQ9UPZ6 1657 aa22.01■■□□□ 1.11
SKA3-204ENST00000462482 SIN3AQ96ST3 1273 aa22.01■■□□□ 1.11
SKA3-204ENST00000462482 ROCK2O75116 1388 aaKnown RBP22■■□□□ 1.11
SKA3-204ENST00000462482 APBA3O96018 575 aa22■■□□□ 1.11
SKA3-204ENST00000462482 DISP2A7MBM2 1401 aa21.99■■□□□ 1.11
SKA3-204ENST00000462482 USP6P35125 1406 aa21.99■■□□□ 1.11
SKA3-204ENST00000462482 C11orf95C9JLR9 678 aaPredicted RBP21.98■■□□□ 1.11
SKA3-204ENST00000462482 EZH2Q15910 746 aaKnown RBP21.98■■□□□ 1.11
SKA3-204ENST00000462482 ZNF692Q9BU19 519 aaPredicted RBP21.98■■□□□ 1.11
SKA3-204ENST00000462482 NRKQ7Z2Y5 1582 aa21.98■■□□□ 1.11
SKA3-204ENST00000462482 R3HDM1Q15032 1099 aaKnown RBP21.97■■□□□ 1.11
SKA3-204ENST00000462482 SRCAPQ6ZRS2 3230 aa21.97■■□□□ 1.11
SKA3-204ENST00000462482 CAMTA1Q9Y6Y1 1673 aa21.97■■□□□ 1.11
SKA3-204ENST00000462482 RGPD1P0DJD0 1748 aa21.96■■□□□ 1.11
SKA3-204ENST00000462482 PARD3Q8TEW0 1356 aa21.96■■□□□ 1.11
SKA3-204ENST00000462482 KCNH5Q8NCM2 988 aa21.94■■□□□ 1.1
SKA3-204ENST00000462482 CAMKK2Q96RR4 588 aa21.94■■□□□ 1.1
SKA3-204ENST00000462482 AATKQ6ZMQ8 1374 aa21.94■■□□□ 1.1
SKA3-204ENST00000462482 COL5A2P05997 1499 aaPredicted RBP21.93■■□□□ 1.1
SKA3-204ENST00000462482 CRB1P82279 1406 aa21.93■■□□□ 1.1
SKA3-204ENST00000462482 TOM1L2Q6ZVM7 507 aa21.93■■□□□ 1.1
SKA3-204ENST00000462482 QRICH2Q9H0J4 1663 aa21.93■■□□□ 1.1
SKA3-204ENST00000462482 TTC21BQ7Z4L5 1316 aa21.91■■□□□ 1.1
SKA3-204ENST00000462482 NBPF14Q5TI25 921 aa21.91■■□□□ 1.1
SKA3-204ENST00000462482 TTC21AQ8NDW8 1320 aa21.9■■□□□ 1.1
SKA3-204ENST00000462482 LMO7Q8WWI1 1683 aa21.89■■□□□ 1.1
SKA3-204ENST00000462482 CSB-PGBD3P0DP91 1061 aa21.89■■□□□ 1.09
SKA3-204ENST00000462482 DDB1Q16531 1140 aa21.89■■□□□ 1.09
SKA3-204ENST00000462482 LRP5O75197 1615 aa21.88■■□□□ 1.09
SKA3-204ENST00000462482 SOX12O15370 315 aa21.88■■□□□ 1.09
SKA3-204ENST00000462482 CDCA7Q9BWT1 371 aaPredicted RBP21.88■■□□□ 1.09
SKA3-204ENST00000462482 SLIT3O75094 1523 aa21.87■■□□□ 1.09
SKA3-204ENST00000462482 CARD11Q9BXL7 1154 aa21.87■■□□□ 1.09
SKA3-204ENST00000462482 KTN1Q86UP2 1357 aaKnown RBP21.87■■□□□ 1.09
SKA3-204ENST00000462482 WDR17Q8IZU2 1322 aa21.86■■□□□ 1.09
SKA3-204ENST00000462482 TRPM1Q7Z4N2 1603 aa21.86■■□□□ 1.09
SKA3-204ENST00000462482 ARHGEF25Q86VW2 580 aa21.85■■□□□ 1.09
SKA3-204ENST00000462482 OVOS2A0A0G2JMS6 1433 aa21.85■■□□□ 1.09
SKA3-204ENST00000462482 OVOS2A0A0J9YW53 1432 aa21.85■■□□□ 1.09
SKA3-204ENST00000462482 OVOS2Q6IE36 1432 aa21.85■■□□□ 1.09
SKA3-204ENST00000462482 CPSF1Q10570 1443 aaKnown RBP21.84■■□□□ 1.09
Retrieved 100 of 20,778 RNA–protein pairs in 96.8 ms