RNA–Protein interactions for RNA: ENST00000462475.1

COL7A1-204, Transcript of collagen type VII alpha 1 chain, humanhuman

TSL 3

Gene COL7A1, Length 305 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-204ENST00000462475 ZRANB1Q9UGI0 708 aa23.46■■□□□ 1.35
COL7A1-204ENST00000462475 CRYBG1Q9Y4K1 1723 aa23.46■■□□□ 1.35
COL7A1-204ENST00000462475 COL14A1Q05707 1796 aaKnown RBP23.45■■□□□ 1.34
COL7A1-204ENST00000462475 PAK3O75914 559 aaPredicted RBP23.45■■□□□ 1.34
COL7A1-204ENST00000462475 ITSN1Q15811 1721 aa23.45■■□□□ 1.34
COL7A1-204ENST00000462475 KRT27Q7Z3Y8 459 aa23.43■■□□□ 1.34
COL7A1-204ENST00000462475 A0A0G2JS52 829 aa23.42■■□□□ 1.34
COL7A1-204ENST00000462475 MYT1Q01538 1121 aa23.42■■□□□ 1.34
COL7A1-204ENST00000462475 FAM98CQ17RN3 349 aaKnown RBP23.42■■□□□ 1.34
COL7A1-204ENST00000462475 DEFB132Q7Z7B7 95 aa23.42■■□□□ 1.34
COL7A1-204ENST00000462475 CDK19Q9BWU1 502 aa23.42■■□□□ 1.34
COL7A1-204ENST00000462475 KIAA1210Q9ULL0 1709 aa23.42■■□□□ 1.34
COL7A1-204ENST00000462475 TOPAZ1Q8N9V7 1692 aa23.41■■□□□ 1.34
COL7A1-204ENST00000462475 NBPF1Q3BBV0 1214 aa23.4■■□□□ 1.34
COL7A1-204ENST00000462475 PRDM11Q9NQV5 511 aa23.39■■□□□ 1.33
COL7A1-204ENST00000462475 POLR3AO14802 1390 aaPredicted RBP23.39■■□□□ 1.33
COL7A1-204ENST00000462475 KIAA0232Q92628 1395 aa23.38■■□□□ 1.33
COL7A1-204ENST00000462475 PHRF1Q9P1Y6 1649 aaKnown RBP23.37■■□□□ 1.33
COL7A1-204ENST00000462475 SPATA31A5Q5VU36 1347 aa23.37■■□□□ 1.33
COL7A1-204ENST00000462475 SPATA31A7Q8IWB4 1347 aa23.37■■□□□ 1.33
COL7A1-204ENST00000462475 SF3B2Q13435 895 aaKnown RBP23.37■■□□□ 1.33
COL7A1-204ENST00000462475 ACEP12821 1306 aa23.36■■□□□ 1.33
COL7A1-204ENST00000462475 NUTM2GQ5VZR2 741 aa23.36■■□□□ 1.33
COL7A1-204ENST00000462475 CCDC61Q9Y6R9 512 aa23.36■■□□□ 1.33
COL7A1-204ENST00000462475 CHRNA2Q15822 529 aa23.34■■□□□ 1.33
COL7A1-204ENST00000462475 NBPF8Q3BBV2 869 aa23.34■■□□□ 1.33
COL7A1-204ENST00000462475 THSD7AQ9UPZ6 1657 aa23.33■■□□□ 1.33
COL7A1-204ENST00000462475 PLEKHG3A1L390 1219 aa23.33■■□□□ 1.33
COL7A1-204ENST00000462475 ZC3H6P61129 1189 aaKnown RBP23.31■■□□□ 1.32
COL7A1-204ENST00000462475 NRKQ7Z2Y5 1582 aa23.31■■□□□ 1.32
COL7A1-204ENST00000462475 CENPJQ9HC77 1338 aaPredicted RBP23.31■■□□□ 1.32
COL7A1-204ENST00000462475 FAM182BQ5T319 152 aa23.3■■□□□ 1.32
COL7A1-204ENST00000462475 SPATA31A1Q5TZJ5 1347 aa23.3■■□□□ 1.32
COL7A1-204ENST00000462475 SRPK2P78362 688 aaKnown RBP23.29■■□□□ 1.32
COL7A1-204ENST00000462475 PPIP5K1Q6PFW1 1433 aa23.29■■□□□ 1.32
COL7A1-204ENST00000462475 STRN4Q9NRL3 753 aa23.29■■□□□ 1.32
COL7A1-204ENST00000462475 BAG6P46379 1132 aa23.27■■□□□ 1.32
COL7A1-204ENST00000462475 ABTB2Q8N961 1025 aa23.27■■□□□ 1.32
COL7A1-204ENST00000462475 CABP2Q9NPB3 220 aa23.27■■□□□ 1.32
COL7A1-204ENST00000462475 USP19O94966 1318 aa23.27■■□□□ 1.32
COL7A1-204ENST00000462475 L3MBTL2Q969R5 705 aa23.26■■□□□ 1.31
COL7A1-204ENST00000462475 QRICH2Q9H0J4 1663 aa23.25■■□□□ 1.31
COL7A1-204ENST00000462475 SSH2Q76I76 1423 aa23.24■■□□□ 1.31
COL7A1-204ENST00000462475 CAMTA1Q9Y6Y1 1673 aa23.23■■□□□ 1.31
COL7A1-204ENST00000462475 CPDO75976 1380 aa23.23■■□□□ 1.31
COL7A1-204ENST00000462475 RGPD1P0DJD0 1748 aa23.22■■□□□ 1.31
COL7A1-204ENST00000462475 USP35Q9P2H5 1018 aa23.22■■□□□ 1.31
COL7A1-204ENST00000462475 LMO7Q8WWI1 1683 aa23.22■■□□□ 1.31
COL7A1-204ENST00000462475 EN1Q05925 392 aaPredicted RBP23.21■■□□□ 1.31
COL7A1-204ENST00000462475 SIN3AQ96ST3 1273 aa23.21■■□□□ 1.31
COL7A1-204ENST00000462475 TNS1Q9HBL0 1735 aaKnown RBP23.19■■□□□ 1.3
COL7A1-204ENST00000462475 DISP2A7MBM2 1401 aa23.19■■□□□ 1.3
COL7A1-204ENST00000462475 USP6P35125 1406 aa23.19■■□□□ 1.3
COL7A1-204ENST00000462475 PSDA5PKW4 1024 aaPredicted RBP23.19■■□□□ 1.3
COL7A1-204ENST00000462475 EVA1CP58658 441 aa23.19■■□□□ 1.3
COL7A1-204ENST00000462475 LARP1Q6PKG0 1096 aaKnown RBP23.19■■□□□ 1.3
COL7A1-204ENST00000462475 NLRP13Q86W25 1043 aa23.19■■□□□ 1.3
COL7A1-204ENST00000462475 CABP1Q9NZU7 370 aa23.19■■□□□ 1.3
COL7A1-204ENST00000462475 TRPM1Q7Z4N2 1603 aa23.19■■□□□ 1.3
COL7A1-204ENST00000462475 GCP02774 474 aa23.18■■□□□ 1.3
COL7A1-204ENST00000462475 BRD4O60885 1362 aaPredicted RBP23.17■■□□□ 1.3
COL7A1-204ENST00000462475 BARGINQ6ZT62 677 aa23.17■■□□□ 1.3
COL7A1-204ENST00000462475 COL5A2P05997 1499 aaPredicted RBP23.15■■□□□ 1.3
COL7A1-204ENST00000462475 LRP5O75197 1615 aa23.15■■□□□ 1.3
COL7A1-204ENST00000462475 SLIT3O75094 1523 aa23.14■■□□□ 1.3
COL7A1-204ENST00000462475 TRIM37O94972 964 aa23.14■■□□□ 1.29
COL7A1-204ENST00000462475 NEUROD1Q13562 356 aa23.14■■□□□ 1.29
COL7A1-204ENST00000462475 FAM196AQ6ZSG2 479 aa23.14■■□□□ 1.29
COL7A1-204ENST00000462475 TCP11L2Q8N4U5 519 aa23.14■■□□□ 1.29
COL7A1-204ENST00000462475 ROCK2O75116 1388 aaKnown RBP23.14■■□□□ 1.29
COL7A1-204ENST00000462475 EVC2Q86UK5 1308 aa23.13■■□□□ 1.29
COL7A1-204ENST00000462475 NLRP6P59044 892 aa23.12■■□□□ 1.29
COL7A1-204ENST00000462475 EZH2Q15910 746 aaKnown RBP23.12■■□□□ 1.29
COL7A1-204ENST00000462475 ZBTB7CA1YPR0 619 aa23.11■■□□□ 1.29
COL7A1-204ENST00000462475 PIK3C2AO00443 1686 aa23.11■■□□□ 1.29
COL7A1-204ENST00000462475 PDE3BQ13370 1112 aa23.1■■□□□ 1.29
COL7A1-204ENST00000462475 CAMKK2Q96RR4 588 aa23.09■■□□□ 1.29
COL7A1-204ENST00000462475 R3HDM1Q15032 1099 aaKnown RBP23.08■■□□□ 1.29
COL7A1-204ENST00000462475 THRAP3Q9Y2W1 955 aaKnown RBP23.08■■□□□ 1.29
COL7A1-204ENST00000462475 AATKQ6ZMQ8 1374 aa23.08■■□□□ 1.29
COL7A1-204ENST00000462475 CRB1P82279 1406 aa23.08■■□□□ 1.28
COL7A1-204ENST00000462475 APBA3O96018 575 aa23.07■■□□□ 1.28
COL7A1-204ENST00000462475 PARP4Q9UKK3 1724 aaKnown RBP23.05■■□□□ 1.28
COL7A1-204ENST00000462475 TTC21BQ7Z4L5 1316 aa23.05■■□□□ 1.28
COL7A1-204ENST00000462475 PARD3Q8TEW0 1356 aa23.04■■□□□ 1.28
COL7A1-204ENST00000462475 CPSF1Q10570 1443 aaKnown RBP23.04■■□□□ 1.28
COL7A1-204ENST00000462475 COL18A1P39060 1754 aa23.02■■□□□ 1.28
COL7A1-204ENST00000462475 AKAP12Q02952 1782 aa23.02■■□□□ 1.28
COL7A1-204ENST00000462475 LRRC37A3O60309 1634 aa23.01■■□□□ 1.27
COL7A1-204ENST00000462475 ZNF692Q9BU19 519 aaPredicted RBP23.01■■□□□ 1.27
COL7A1-204ENST00000462475 AXIN2Q9Y2T1 843 aa23.01■■□□□ 1.27
COL7A1-204ENST00000462475 RREB1Q92766 1687 aa23■■□□□ 1.27
COL7A1-204ENST00000462475 SOX12O15370 315 aa23■■□□□ 1.27
COL7A1-204ENST00000462475 TOM1L2Q6ZVM7 507 aa23■■□□□ 1.27
COL7A1-204ENST00000462475 ARHGEF25Q86VW2 580 aa22.99■■□□□ 1.27
COL7A1-204ENST00000462475 WDR17Q8IZU2 1322 aa22.99■■□□□ 1.27
COL7A1-204ENST00000462475 TTC21AQ8NDW8 1320 aa22.99■■□□□ 1.27
COL7A1-204ENST00000462475 SBNO2Q9Y2G9 1366 aa22.99■■□□□ 1.27
COL7A1-204ENST00000462475 PEAK1Q9H792 1746 aa22.99■■□□□ 1.27
COL7A1-204ENST00000462475 OVOS2A0A0G2JMS6 1433 aa22.99■■□□□ 1.27
Retrieved 100 of 20,778 RNA–protein pairs in 74.8 ms