RNA–Protein interactions for RNA: ENST00000462429.1

VPS41-210, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 3

Gene VPS41, Length 347 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-210ENST00000462429 FCF1Q9Y324 198 aaKnown RBP8.2□□□□□ -1.1
VPS41-210ENST00000462429 IRF5Q13568 498 aa8.19□□□□□ -1.1
VPS41-210ENST00000462429 NBPF14Q5TI25 921 aa8.19□□□□□ -1.1
VPS41-210ENST00000462429 GPKOWQ92917 476 aaPredicted RBP eCLIP8.19□□□□□ -1.1
VPS41-210ENST00000462429 GPR37L1O60883 481 aa8.18□□□□□ -1.1
VPS41-210ENST00000462429 UNC93B1Q9H1C4 597 aa8.18□□□□□ -1.1
VPS41-210ENST00000462429 PLSCR2Q9NRY7 297 aa8.18□□□□□ -1.1
VPS41-210ENST00000462429 ZNF777Q9ULD5 760 aaPredicted RBP8.18□□□□□ -1.1
VPS41-210ENST00000462429 ARID3CA6NKF2 412 aa8.17□□□□□ -1.1
VPS41-210ENST00000462429 RNF223E7ERA6 249 aa8.16□□□□□ -1.1
VPS41-210ENST00000462429 ANKLE1Q8NAG6 615 aa8.16□□□□□ -1.1
VPS41-210ENST00000462429 EIF4ENIF1Q9NRA8 985 aaKnown RBP8.16□□□□□ -1.1
VPS41-210ENST00000462429 ZBBXA8MT70 800 aa8.15□□□□□ -1.1
VPS41-210ENST00000462429 PPEF1O14829 653 aaPredicted RBP8.15□□□□□ -1.1
VPS41-210ENST00000462429 ZBTB24O43167 697 aaPredicted RBP8.15□□□□□ -1.1
VPS41-210ENST00000462429 VAC14Q08AM6 782 aa8.15□□□□□ -1.1
VPS41-210ENST00000462429 PTCRAQ6ISU1 281 aaPredicted RBP8.15□□□□□ -1.1
VPS41-210ENST00000462429 PPP1R18Q6NYC8 613 aa8.15□□□□□ -1.1
VPS41-210ENST00000462429 PDXDC2PQ6P474 469 aa8.15□□□□□ -1.1
VPS41-210ENST00000462429 GPSM3Q9Y4H4 160 aa8.15□□□□□ -1.1
VPS41-210ENST00000462429 PTK2Q05397 1052 aa8.14□□□□□ -1.11
VPS41-210ENST00000462429 NR1H3Q13133 447 aa8.14□□□□□ -1.11
VPS41-210ENST00000462429 IFFO2Q5TF58 517 aa8.14□□□□□ -1.11
VPS41-210ENST00000462429 POM121CA8CG34 1229 aa8.13□□□□□ -1.11
VPS41-210ENST00000462429 SOX11P35716 441 aa8.13□□□□□ -1.11
VPS41-210ENST00000462429 EIF4G2P78344 907 aaKnown RBP eCLIP8.13□□□□□ -1.11
VPS41-210ENST00000462429 FBXO45P0C2W1 286 aa8.12□□□□□ -1.11
VPS41-210ENST00000462429 CALR3Q96L12 384 aaKnown RBP8.12□□□□□ -1.11
VPS41-210ENST00000462429 C1orf115Q9H7X2 142 aa8.12□□□□□ -1.11
VPS41-210ENST00000462429 BAP1Q92560 729 aa8.11□□□□□ -1.11
VPS41-210ENST00000462429 ZNF592Q92610 1267 aa8.11□□□□□ -1.11
VPS41-210ENST00000462429 GLMNQ92990 594 aa8.11□□□□□ -1.11
VPS41-210ENST00000462429 CCDC97Q96F63 343 aaPredicted RBP8.11□□□□□ -1.11
VPS41-210ENST00000462429 ARHGAP9Q9BRR9 750 aa8.11□□□□□ -1.11
VPS41-210ENST00000462429 SEMA3FQ13275 785 aa8.1□□□□□ -1.11
VPS41-210ENST00000462429 BPHLQ86WA6 291 aaPredicted RBP8.1□□□□□ -1.11
VPS41-210ENST00000462429 ZNF511Q8NB15 262 aa8.1□□□□□ -1.11
VPS41-210ENST00000462429 PLA2G2EQ9NZK7 142 aa8.1□□□□□ -1.11
VPS41-210ENST00000462429 SERPINA10Q9UK55 444 aa8.1□□□□□ -1.11
VPS41-210ENST00000462429 RPIAP49247 311 aa8.09□□□□□ -1.11
VPS41-210ENST00000462429 TRIM32Q13049 653 aa8.09□□□□□ -1.11
VPS41-210ENST00000462429 AGERQ15109 404 aa8.09□□□□□ -1.11
VPS41-210ENST00000462429 LINC01559Q495D7 138 aa8.09□□□□□ -1.11
VPS41-210ENST00000462429 HDGFL1Q5TGJ6 251 aa8.09□□□□□ -1.11
VPS41-210ENST00000462429 SH3BP5LQ7L8J4 393 aa8.09□□□□□ -1.11
VPS41-210ENST00000462429 ZBTB33Q86T24 672 aa8.09□□□□□ -1.11
VPS41-210ENST00000462429 MCCD1P59942 119 aaPredicted RBP8.08□□□□□ -1.12
VPS41-210ENST00000462429 PLA2G2CQ5R387 149 aa8.08□□□□□ -1.12
VPS41-210ENST00000462429 CCDC82Q8N4S0 544 aa8.08□□□□□ -1.12
VPS41-210ENST00000462429 CD2BP2O95400 341 aaKnown RBP8.07□□□□□ -1.12
VPS41-210ENST00000462429 ARID3AQ99856 593 aa8.07□□□□□ -1.12
VPS41-210ENST00000462429 ALG2Q9H553 416 aa8.07□□□□□ -1.12
VPS41-210ENST00000462429 MAGEB6P1A0A0J9YX57 407 aa8.06□□□□□ -1.12
VPS41-210ENST00000462429 WNT7BP56706 349 aa8.06□□□□□ -1.12
VPS41-210ENST00000462429 SH3BP2P78314 561 aa8.06□□□□□ -1.12
VPS41-210ENST00000462429 SH3RF1Q7Z6J0 888 aa8.06□□□□□ -1.12
VPS41-210ENST00000462429 ADAM32Q8TC27 787 aa8.06□□□□□ -1.12
VPS41-210ENST00000462429 ADAMTS19Q8TE59 1207 aa8.06□□□□□ -1.12
VPS41-210ENST00000462429 CARD14Q9BXL6 1004 aa8.06□□□□□ -1.12
VPS41-210ENST00000462429 FOXJ1Q92949 421 aa8.05□□□□□ -1.12
VPS41-210ENST00000462429 OCSTAMPQ9BR26 566 aa8.05□□□□□ -1.12
VPS41-210ENST00000462429 PCDHB9Q9Y5E1 797 aa8.05□□□□□ -1.12
VPS41-210ENST00000462429 A0A0G2JS52 829 aa8.04□□□□□ -1.12
VPS41-210ENST00000462429 DZIP3Q86Y13 1208 aaKnown RBP8.04□□□□□ -1.12
VPS41-210ENST00000462429 SLC19A1P41440 591 aa8.03□□□□□ -1.12
VPS41-210ENST00000462429 LIAT1Q6ZQX7 453 aa8.03□□□□□ -1.12
VPS41-210ENST00000462429 SLC10A4Q96EP9 437 aa8.03□□□□□ -1.12
VPS41-210ENST00000462429 VARSP26640 1264 aaKnown RBP8.02□□□□□ -1.13
VPS41-210ENST00000462429 ERFEQ4G0M1 354 aa8.02□□□□□ -1.13
VPS41-210ENST00000462429 C4orf48Q5BLP8 95 aa8.02□□□□□ -1.13
VPS41-210ENST00000462429 C1QTNF2Q9BXJ5 285 aa8.02□□□□□ -1.13
VPS41-210ENST00000462429 SKOR1P84550 965 aa8.01□□□□□ -1.13
VPS41-210ENST00000462429 FAM174AQ8TBP5 190 aa8.01□□□□□ -1.13
VPS41-210ENST00000462429 CDV3Q9UKY7 258 aaKnown RBP8.01□□□□□ -1.13
VPS41-210ENST00000462429 NBPF20Q3BBV1 942 aa8□□□□□ -1.13
VPS41-210ENST00000462429 SLFNL1Q499Z3 407 aa8□□□□□ -1.13
VPS41-210ENST00000462429 TRMT44Q8IYL2 757 aaKnown RBP8□□□□□ -1.13
VPS41-210ENST00000462429 EHBP1Q8NDI1 1231 aa8□□□□□ -1.13
VPS41-210ENST00000462429 CEP126Q9P2H0 1117 aa8□□□□□ -1.13
VPS41-210ENST00000462429 RC3H1Q5TC82 1133 aaKnown RBP7.99□□□□□ -1.13
VPS41-210ENST00000462429 EMID1Q96A84 441 aaPredicted RBP7.99□□□□□ -1.13
VPS41-210ENST00000462429 PPP1R12CQ9BZL4 782 aa7.99□□□□□ -1.13
VPS41-210ENST00000462429 SPRYD7Q5W111 196 aa7.98□□□□□ -1.13
VPS41-210ENST00000462429 NFATC2IPQ8NCF5 419 aa7.98□□□□□ -1.13
VPS41-210ENST00000462429 UCN2Q96RP3 112 aa7.98□□□□□ -1.13
VPS41-210ENST00000462429 PALM3A6NDB9 673 aaPredicted RBP7.97□□□□□ -1.13
VPS41-210ENST00000462429 RNF20Q5VTR2 975 aa7.97□□□□□ -1.13
VPS41-210ENST00000462429 RNF135Q8IUD6 432 aa7.97□□□□□ -1.13
VPS41-210ENST00000462429 ARXQ96QS3 562 aa7.97□□□□□ -1.13
VPS41-210ENST00000462429 PRKD2Q9BZL6 878 aa7.97□□□□□ -1.13
VPS41-210ENST00000462429 TFIP11Q9UBB9 837 aaKnown RBP7.97□□□□□ -1.13
VPS41-210ENST00000462429 MAP4K5Q9Y4K4 846 aa7.97□□□□□ -1.13
VPS41-210ENST00000462429 V9GY48 417 aaPredicted RBP7.97□□□□□ -1.13
VPS41-210ENST00000462429 WNT7AO00755 349 aa7.96□□□□□ -1.14
VPS41-210ENST00000462429 ATP9BO43861 1147 aa7.96□□□□□ -1.14
VPS41-210ENST00000462429 SKIP12755 728 aa7.96□□□□□ -1.14
VPS41-210ENST00000462429 ZNF697Q5TEC3 545 aa7.96□□□□□ -1.14
VPS41-210ENST00000462429 VASH1Q7L8A9 365 aaPredicted RBP7.96□□□□□ -1.14
VPS41-210ENST00000462429 ZNF598Q86UK7 904 aaKnown RBP7.96□□□□□ -1.14
VPS41-210ENST00000462429 PIK3CDO00329 1044 aa7.95□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 21.9 ms