RNA–Protein interactions for RNA: ENST00000462421.1

DDX39B-216, Transcript of DExD-box helicase 39B, humanhuman

TSL 3

Gene DDX39B, Length 618 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX39B-216ENST00000462421 PRR36Q9H6K5 1346 aa12.57□□□□□ -0.4
DDX39B-216ENST00000462421 BRD4O60885 1362 aaPredicted RBP12.56□□□□□ -0.4
DDX39B-216ENST00000462421 TRPM1Q7Z4N2 1603 aa12.56□□□□□ -0.4
DDX39B-216ENST00000462421 NBPF8Q3BBV2 869 aa12.56□□□□□ -0.4
DDX39B-216ENST00000462421 HDGFL2Q7Z4V5 671 aaPredicted RBP12.56□□□□□ -0.4
DDX39B-216ENST00000462421 NLRP13Q86W25 1043 aa12.56□□□□□ -0.4
DDX39B-216ENST00000462421 UNC5CLQ8IV45 518 aa12.56□□□□□ -0.4
DDX39B-216ENST00000462421 FNBP4Q8N3X1 1017 aaPredicted RBP12.56□□□□□ -0.4
DDX39B-216ENST00000462421 TMC1Q8TDI8 760 aa12.56□□□□□ -0.4
DDX39B-216ENST00000462421 CABLES1Q8TDN4 633 aa12.56□□□□□ -0.4
DDX39B-216ENST00000462421 ZNF692Q9BU19 519 aaPredicted RBP12.56□□□□□ -0.4
DDX39B-216ENST00000462421 PRDM11Q9NQV5 511 aa12.56□□□□□ -0.4
DDX39B-216ENST00000462421 QRICH2Q9H0J4 1663 aa12.56□□□□□ -0.4
DDX39B-216ENST00000462421 RALGAPBQ86X10 1494 aa12.55□□□□□ -0.4
DDX39B-216ENST00000462421 CDK12Q9NYV4 1490 aaPredicted RBP12.55□□□□□ -0.4
DDX39B-216ENST00000462421 PLEKHG3A1L390 1219 aa12.55□□□□□ -0.4
DDX39B-216ENST00000462421 CDCA8Q53HL2 280 aa12.55□□□□□ -0.4
DDX39B-216ENST00000462421 ZBTB7CA1YPR0 619 aa12.54□□□□□ -0.4
DDX39B-216ENST00000462421 EVA1CP58658 441 aa12.54□□□□□ -0.4
DDX39B-216ENST00000462421 CABP1Q9NZU7 370 aa12.54□□□□□ -0.4
DDX39B-216ENST00000462421 NUTM2GQ5VZR2 741 aa12.53□□□□□ -0.4
DDX39B-216ENST00000462421 TERF2IPQ9NYB0 399 aa12.53□□□□□ -0.4
DDX39B-216ENST00000462421 POLR3AO14802 1390 aaPredicted RBP12.53□□□□□ -0.4
DDX39B-216ENST00000462421 USP32Q8NFA0 1604 aa12.52□□□□□ -0.4
DDX39B-216ENST00000462421 TMF1P82094 1093 aa12.52□□□□□ -0.41
DDX39B-216ENST00000462421 GJD4Q96KN9 370 aaPredicted RBP12.52□□□□□ -0.41
DDX39B-216ENST00000462421 RGPD8O14715 1765 aaPredicted RBP12.51□□□□□ -0.41
DDX39B-216ENST00000462421 NLRP6P59044 892 aa12.51□□□□□ -0.41
DDX39B-216ENST00000462421 SF3B2Q13435 895 aaKnown RBP12.51□□□□□ -0.41
DDX39B-216ENST00000462421 BTG4Q9NY30 223 aa12.51□□□□□ -0.41
DDX39B-216ENST00000462421 SBNO2Q9Y2G9 1366 aa12.5□□□□□ -0.41
DDX39B-216ENST00000462421 ATRNO75882 1429 aa12.5□□□□□ -0.41
DDX39B-216ENST00000462421 KTN1Q86UP2 1357 aaKnown RBP12.49□□□□□ -0.41
DDX39B-216ENST00000462421 NINLQ9Y2I6 1382 aa12.49□□□□□ -0.41
DDX39B-216ENST00000462421 TTC21AQ8NDW8 1320 aa12.49□□□□□ -0.41
DDX39B-216ENST00000462421 VPS72Q15906 364 aa12.49□□□□□ -0.41
DDX39B-216ENST00000462421 KCNH5Q8NCM2 988 aa12.49□□□□□ -0.41
DDX39B-216ENST00000462421 STRN4Q9NRL3 753 aa12.49□□□□□ -0.41
DDX39B-216ENST00000462421 ZC3H6P61129 1189 aaKnown RBP12.48□□□□□ -0.41
DDX39B-216ENST00000462421 RGS12O14924 1447 aa12.47□□□□□ -0.41
DDX39B-216ENST00000462421 USP6P35125 1406 aa12.47□□□□□ -0.41
DDX39B-216ENST00000462421 USP47Q96K76 1375 aa12.47□□□□□ -0.41
DDX39B-216ENST00000462421 FAM83GA6ND36 823 aa12.47□□□□□ -0.41
DDX39B-216ENST00000462421 TOPAZ1Q8N9V7 1692 aa12.47□□□□□ -0.41
DDX39B-216ENST00000462421 SLIT2O94813 1529 aa12.47□□□□□ -0.41
DDX39B-216ENST00000462421 KIAA0232Q92628 1395 aa12.46□□□□□ -0.41
DDX39B-216ENST00000462421 ST20-MTHFSA0A0A6YYL1 179 aa12.46□□□□□ -0.41
DDX39B-216ENST00000462421 PUS7Q96PZ0 661 aaKnown RBP12.46□□□□□ -0.41
DDX39B-216ENST00000462421 BCL9LQ86UU0 1499 aa12.46□□□□□ -0.42
DDX39B-216ENST00000462421 MARF1Q9Y4F3 1742 aaKnown RBP12.45□□□□□ -0.42
DDX39B-216ENST00000462421 SOX12O15370 315 aa12.45□□□□□ -0.42
DDX39B-216ENST00000462421 CSB-PGBD3P0DP91 1061 aa12.45□□□□□ -0.42
DDX39B-216ENST00000462421 CHRNA2Q15822 529 aa12.45□□□□□ -0.42
DDX39B-216ENST00000462421 SUGP2Q8IX01 1082 aaKnown RBP eCLIP12.45□□□□□ -0.42
DDX39B-216ENST00000462421 POLR3GLQ9BT43 218 aa12.45□□□□□ -0.42
DDX39B-216ENST00000462421 COL14A1Q05707 1796 aaKnown RBP12.45□□□□□ -0.42
DDX39B-216ENST00000462421 TRPM3Q9HCF6 1732 aaPredicted RBP12.45□□□□□ -0.42
DDX39B-216ENST00000462421 TTC21BQ7Z4L5 1316 aa12.44□□□□□ -0.42
DDX39B-216ENST00000462421 GCP02774 474 aa12.44□□□□□ -0.42
DDX39B-216ENST00000462421 ALS2Q96Q42 1657 aa12.44□□□□□ -0.42
DDX39B-216ENST00000462421 FAM98CQ17RN3 349 aaKnown RBP12.43□□□□□ -0.42
DDX39B-216ENST00000462421 CCDC125Q86Z20 511 aa12.43□□□□□ -0.42
DDX39B-216ENST00000462421 SEPT12Q8IYM1 358 aa12.43□□□□□ -0.42
DDX39B-216ENST00000462421 USP35Q9P2H5 1018 aa12.43□□□□□ -0.42
DDX39B-216ENST00000462421 NWD2Q9ULI1 1742 aa12.42□□□□□ -0.42
DDX39B-216ENST00000462421 USP19O94966 1318 aa12.42□□□□□ -0.42
DDX39B-216ENST00000462421 UPF1Q92900 1129 aaKnown RBP eCLIP12.42□□□□□ -0.42
DDX39B-216ENST00000462421 TNKS1BP1Q9C0C2 1729 aaKnown RBP12.42□□□□□ -0.42
DDX39B-216ENST00000462421 EIF4G2P78344 907 aaKnown RBP eCLIP12.41□□□□□ -0.42
DDX39B-216ENST00000462421 PDE3BQ13370 1112 aa12.41□□□□□ -0.42
DDX39B-216ENST00000462421 KRT27Q7Z3Y8 459 aa12.41□□□□□ -0.42
DDX39B-216ENST00000462421 COG3Q96JB2 828 aa12.41□□□□□ -0.42
DDX39B-216ENST00000462421 PLCH1Q4KWH8 1693 aa12.41□□□□□ -0.42
DDX39B-216ENST00000462421 CPDO75976 1380 aa12.41□□□□□ -0.42
DDX39B-216ENST00000462421 ABCA3Q99758 1704 aa12.4□□□□□ -0.42
DDX39B-216ENST00000462421 EDC4Q6P2E9 1401 aaKnown RBP12.4□□□□□ -0.42
DDX39B-216ENST00000462421 TOM1L2Q6ZVM7 507 aa12.4□□□□□ -0.42
DDX39B-216ENST00000462421 SLC12A5Q9H2X9 1139 aa12.4□□□□□ -0.42
DDX39B-216ENST00000462421 SPATA31A5Q5VU36 1347 aa12.39□□□□□ -0.43
DDX39B-216ENST00000462421 SPATA31A7Q8IWB4 1347 aa12.39□□□□□ -0.43
DDX39B-216ENST00000462421 TCP11L2Q8N4U5 519 aa12.39□□□□□ -0.43
DDX39B-216ENST00000462421 THRAP3Q9Y2W1 955 aaKnown RBP12.39□□□□□ -0.43
DDX39B-216ENST00000462421 PHRF1Q9P1Y6 1649 aaKnown RBP12.38□□□□□ -0.43
DDX39B-216ENST00000462421 C11orf95C9JLR9 678 aaPredicted RBP12.38□□□□□ -0.43
DDX39B-216ENST00000462421 SSH2Q76I76 1423 aa12.37□□□□□ -0.43
DDX39B-216ENST00000462421 AATKQ6ZMQ8 1374 aa12.37□□□□□ -0.43
DDX39B-216ENST00000462421 NRKQ7Z2Y5 1582 aa12.37□□□□□ -0.43
DDX39B-216ENST00000462421 CPSF1Q10570 1443 aaKnown RBP12.37□□□□□ -0.43
DDX39B-216ENST00000462421 SPATA31A1Q5TZJ5 1347 aa12.37□□□□□ -0.43
DDX39B-216ENST00000462421 A0A1W2PP64 1363 aa12.36□□□□□ -0.43
DDX39B-216ENST00000462421 ANKRD36BQ8N2N9 1353 aa12.36□□□□□ -0.43
DDX39B-216ENST00000462421 BAG6P46379 1132 aa12.36□□□□□ -0.43
DDX39B-216ENST00000462421 TESK2Q96S53 571 aa12.36□□□□□ -0.43
DDX39B-216ENST00000462421 CDCA7Q9BWT1 371 aaPredicted RBP12.36□□□□□ -0.43
DDX39B-216ENST00000462421 AMPHP49418 695 aa12.35□□□□□ -0.43
DDX39B-216ENST00000462421 NME9Q86XW9 330 aa12.35□□□□□ -0.43
DDX39B-216ENST00000462421 LARP1Q6PKG0 1096 aaKnown RBP12.34□□□□□ -0.43
DDX39B-216ENST00000462421 FAM196AQ6ZSG2 479 aa12.34□□□□□ -0.43
DDX39B-216ENST00000462421 BARGINQ6ZT62 677 aa12.34□□□□□ -0.43
DDX39B-216ENST00000462421 ZRANB1Q9UGI0 708 aa12.34□□□□□ -0.43
Retrieved 100 of 20,778 RNA–protein pairs in 91.4 ms