RNA–Protein interactions for RNA: ENST00000461872.6

SYNE1-216, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 10,075 nt, Biotype retained intron, Subcellular localisation Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-216ENST00000461872 CDCA7LQ96GN5 454 aa8.58□□□□□ -1.04
SYNE1-216ENST00000461872 CCDC146Q8IYE0 955 aa8.58□□□□□ -1.04
SYNE1-216ENST00000461872 RARSP54136 660 aaKnown RBP8.58□□□□□ -1.04
SYNE1-216ENST00000461872 GRPEL1Q9HAV7 217 aa8.58□□□□□ -1.04
SYNE1-216ENST00000461872 K7ELQ4 463 aaPredicted RBP8.58□□□□□ -1.04
SYNE1-216ENST00000461872 NSD3Q9BZ95 1437 aa8.58□□□□□ -1.04
SYNE1-216ENST00000461872 PDCL2Q8N4E4 241 aa8.58□□□□□ -1.04
SYNE1-216ENST00000461872 GNAI3P08754 354 aa8.58□□□□□ -1.04
SYNE1-216ENST00000461872 DISP3Q9P2K9 1392 aa8.57□□□□□ -1.04
SYNE1-216ENST00000461872 PDZRN3Q9UPQ7 1066 aa8.57□□□□□ -1.04
SYNE1-216ENST00000461872 IBTKQ9P2D0 1353 aaPredicted RBP8.57□□□□□ -1.04
SYNE1-216ENST00000461872 HIP1O00291 1037 aa8.57□□□□□ -1.04
SYNE1-216ENST00000461872 KIF24Q5T7B8 1368 aa8.57□□□□□ -1.04
SYNE1-216ENST00000461872 UHRF1BP1LA0JNW5 1464 aa8.57□□□□□ -1.04
SYNE1-216ENST00000461872 ZNF518AQ6AHZ1 1483 aa8.57□□□□□ -1.04
SYNE1-216ENST00000461872 COG3Q96JB2 828 aa8.57□□□□□ -1.04
SYNE1-216ENST00000461872 NBPF1Q3BBV0 1214 aa8.57□□□□□ -1.04
SYNE1-216ENST00000461872 ASXL2Q76L83 1435 aa8.56□□□□□ -1.04
SYNE1-216ENST00000461872 LRRIQ1Q96JM4 1722 aa8.56□□□□□ -1.04
SYNE1-216ENST00000461872 ZSCAN21Q9Y5A6 473 aaPredicted RBP8.56□□□□□ -1.04
SYNE1-216ENST00000461872 RIPK4P57078 832 aa8.56□□□□□ -1.04
SYNE1-216ENST00000461872 ARXQ96QS3 562 aa8.56□□□□□ -1.04
SYNE1-216ENST00000461872 IFT57Q9NWB7 429 aa8.56□□□□□ -1.04
SYNE1-216ENST00000461872 CCT4P50991 539 aaKnown RBP8.56□□□□□ -1.04
SYNE1-216ENST00000461872 ZKSCAN1P17029 563 aaPredicted RBP8.56□□□□□ -1.04
SYNE1-216ENST00000461872 RNF20Q5VTR2 975 aa8.56□□□□□ -1.04
SYNE1-216ENST00000461872 KLHL40Q2TBA0 621 aa8.56□□□□□ -1.04
SYNE1-216ENST00000461872 ANKRD45Q5TZF3 282 aa8.56□□□□□ -1.04
SYNE1-216ENST00000461872 UBE2Q2Q8WVN8 375 aa8.56□□□□□ -1.04
SYNE1-216ENST00000461872 E9PCH4 1651 aa8.55□□□□□ -1.04
SYNE1-216ENST00000461872 CCP110O43303 1012 aa8.55□□□□□ -1.04
SYNE1-216ENST00000461872 KIF2AO00139 706 aaPredicted RBP8.55□□□□□ -1.04
SYNE1-216ENST00000461872 KCNJ4P48050 445 aa8.55□□□□□ -1.04
SYNE1-216ENST00000461872 ZNF692Q9BU19 519 aaPredicted RBP8.55□□□□□ -1.04
SYNE1-216ENST00000461872 FANCAO15360 1455 aa8.55□□□□□ -1.04
SYNE1-216ENST00000461872 PANK1Q8TE04 598 aa8.55□□□□□ -1.04
SYNE1-216ENST00000461872 WDR33Q9C0J8 1336 aaKnown RBP8.55□□□□□ -1.04
SYNE1-216ENST00000461872 ERC2O15083 957 aa8.55□□□□□ -1.04
SYNE1-216ENST00000461872 PDCL3Q9H2J4 239 aa8.55□□□□□ -1.04
SYNE1-216ENST00000461872 MTHFSP49914 203 aa8.54□□□□□ -1.04
SYNE1-216ENST00000461872 C8orf34Q49A92 452 aa8.54□□□□□ -1.04
SYNE1-216ENST00000461872 GZF1Q9H116 711 aaPredicted RBP8.54□□□□□ -1.04
SYNE1-216ENST00000461872 CDK11BP21127 795 aaKnown RBP8.54□□□□□ -1.04
SYNE1-216ENST00000461872 CHD1LQ86WJ1 897 aa8.54□□□□□ -1.04
SYNE1-216ENST00000461872 MAGI2Q86UL8 1455 aa8.54□□□□□ -1.04
SYNE1-216ENST00000461872 SMC5Q8IY18 1101 aa8.54□□□□□ -1.04
SYNE1-216ENST00000461872 OS9Q13438 667 aaPredicted RBP8.53□□□□□ -1.04
SYNE1-216ENST00000461872 AEBP1Q8IUX7 1158 aa8.53□□□□□ -1.04
SYNE1-216ENST00000461872 ANAPC15P60006 121 aa8.53□□□□□ -1.04
SYNE1-216ENST00000461872 ATP7AQ04656 1500 aa8.53□□□□□ -1.04
SYNE1-216ENST00000461872 ZNF608Q9ULD9 1512 aaPredicted RBP8.53□□□□□ -1.04
SYNE1-216ENST00000461872 PTPRTO14522 1441 aa8.53□□□□□ -1.04
SYNE1-216ENST00000461872 TUBB4AP04350 444 aa8.53□□□□□ -1.04
SYNE1-216ENST00000461872 C14orf93Q9H972 538 aaKnown RBP8.52□□□□□ -1.04
SYNE1-216ENST00000461872 PTPRCP08575 1304 aa8.52□□□□□ -1.04
SYNE1-216ENST00000461872 UVSSAQ2YD98 709 aa8.52□□□□□ -1.05
SYNE1-216ENST00000461872 ZNF521Q96K83 1311 aa8.52□□□□□ -1.05
SYNE1-216ENST00000461872 SETBP1Q9Y6X0 1596 aa8.52□□□□□ -1.05
SYNE1-216ENST00000461872 KDM6BO15054 1643 aa8.52□□□□□ -1.05
SYNE1-216ENST00000461872 ANKRD1Q15327 319 aa8.52□□□□□ -1.05
SYNE1-216ENST00000461872 BRPF3Q9ULD4 1205 aa8.52□□□□□ -1.05
SYNE1-216ENST00000461872 PSMA5P28066 241 aa8.52□□□□□ -1.05
SYNE1-216ENST00000461872 ERC1Q8IUD2 1116 aa8.52□□□□□ -1.05
SYNE1-216ENST00000461872 NAT10Q9H0A0 1025 aaKnown RBP8.52□□□□□ -1.05
SYNE1-216ENST00000461872 TRAK1Q9UPV9 953 aa8.52□□□□□ -1.05
SYNE1-216ENST00000461872 GGT6Q6P531 493 aa8.51□□□□□ -1.05
SYNE1-216ENST00000461872 GAS2L2Q8NHY3 880 aa8.51□□□□□ -1.05
SYNE1-216ENST00000461872 TRAPPC8Q9Y2L5 1435 aa8.51□□□□□ -1.05
SYNE1-216ENST00000461872 SAMD9LQ8IVG5 1584 aa8.51□□□□□ -1.05
SYNE1-216ENST00000461872 PRIMPOLQ96LW4 560 aa8.51□□□□□ -1.05
SYNE1-216ENST00000461872 RBM25P49756 843 aaKnown RBP8.51□□□□□ -1.05
SYNE1-216ENST00000461872 ZSCAN31Q96LW9 406 aaPredicted RBP8.51□□□□□ -1.05
SYNE1-216ENST00000461872 BCORL1Q5H9F3 1711 aa8.51□□□□□ -1.05
SYNE1-216ENST00000461872 DYNC1I1O14576 645 aa8.51□□□□□ -1.05
SYNE1-216ENST00000461872 FGD1P98174 961 aa8.51□□□□□ -1.05
SYNE1-216ENST00000461872 TBC1D2Q9BYX2 928 aa8.51□□□□□ -1.05
SYNE1-216ENST00000461872 TRMT2AQ8IZ69 625 aaKnown RBP8.51□□□□□ -1.05
SYNE1-216ENST00000461872 SPHKAPQ2M3C7 1700 aa8.5□□□□□ -1.05
SYNE1-216ENST00000461872 RNF17Q9BXT8 1623 aaKnown RBP8.5□□□□□ -1.05
SYNE1-216ENST00000461872 BRPF1P55201 1214 aaPredicted RBP8.5□□□□□ -1.05
SYNE1-216ENST00000461872 NFE2L2Q16236 605 aa8.5□□□□□ -1.05
SYNE1-216ENST00000461872 CEP152O94986 1710 aa8.5□□□□□ -1.05
SYNE1-216ENST00000461872 CFAP70Q5T0N1 1121 aa8.5□□□□□ -1.05
SYNE1-216ENST00000461872 TSPY26PQ9H489 355 aa8.5□□□□□ -1.05
SYNE1-216ENST00000461872 GPS2Q13227 327 aa8.5□□□□□ -1.05
SYNE1-216ENST00000461872 NEMFO60524 1076 aa8.5□□□□□ -1.05
SYNE1-216ENST00000461872 DRC7Q8IY82 874 aa8.5□□□□□ -1.05
SYNE1-216ENST00000461872 TMPOP42166 694 aaKnown RBP8.49□□□□□ -1.05
SYNE1-216ENST00000461872 TTC21BQ7Z4L5 1316 aa8.49□□□□□ -1.05
SYNE1-216ENST00000461872 CCDC66A2RUB6 948 aa8.49□□□□□ -1.05
SYNE1-216ENST00000461872 ABCC1P33527 1531 aa8.49□□□□□ -1.05
SYNE1-216ENST00000461872 BCAR3O75815 825 aa8.49□□□□□ -1.05
SYNE1-216ENST00000461872 ARGLU1Q9NWB6 273 aaPredicted RBP8.49□□□□□ -1.05
SYNE1-216ENST00000461872 DENND4BO75064 1496 aaPredicted RBP8.48□□□□□ -1.05
SYNE1-216ENST00000461872 NUCB1Q02818 461 aa8.48□□□□□ -1.05
SYNE1-216ENST00000461872 SLC4A3P48751 1232 aa8.48□□□□□ -1.05
SYNE1-216ENST00000461872 SH2B1Q9NRF2 756 aaPredicted RBP8.48□□□□□ -1.05
SYNE1-216ENST00000461872 GOLGA6L19H0YKK7 550 aa8.48□□□□□ -1.05
SYNE1-216ENST00000461872 INTS4Q96HW7 963 aaKnown RBP8.48□□□□□ -1.05
SYNE1-216ENST00000461872 HOOK1Q9UJC3 728 aaKnown RBP8.48□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 18 ms