RNA–Protein interactions for RNA: ENST00000461553.1

USP4-206, Transcript of ubiquitin specific peptidase 4, humanhuman

TSL 4

Gene USP4, Length 544 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP4-206ENST00000461553 SIN3AQ96ST3 1273 aa20.07■□□□□ 0.8
USP4-206ENST00000461553 CDK19Q9BWU1 502 aa20.07■□□□□ 0.8
USP4-206ENST00000461553 BRWD3Q6RI45 1802 aa20.06■□□□□ 0.8
USP4-206ENST00000461553 NEUROD1Q13562 356 aa20.06■□□□□ 0.8
USP4-206ENST00000461553 GJD4Q96KN9 370 aaPredicted RBP20.05■□□□□ 0.8
USP4-206ENST00000461553 PAK3O75914 559 aaPredicted RBP20.04■□□□□ 0.8
USP4-206ENST00000461553 POLR3AO14802 1390 aaPredicted RBP20.04■□□□□ 0.8
USP4-206ENST00000461553 ROCK2O75116 1388 aaKnown RBP20.04■□□□□ 0.8
USP4-206ENST00000461553 PPIP5K1Q6PFW1 1433 aa20.02■□□□□ 0.79
USP4-206ENST00000461553 SRPK2P78362 688 aaKnown RBP20.01■□□□□ 0.79
USP4-206ENST00000461553 CCDC61Q9Y6R9 512 aa20.01■□□□□ 0.79
USP4-206ENST00000461553 NRKQ7Z2Y5 1582 aa20■□□□□ 0.79
USP4-206ENST00000461553 ACEP12821 1306 aa20■□□□□ 0.79
USP4-206ENST00000461553 VPS72Q15906 364 aa19.98■□□□□ 0.79
USP4-206ENST00000461553 CCDC9Q9Y3X0 531 aaKnown RBP19.98■□□□□ 0.79
USP4-206ENST00000461553 PLEKHG3A1L390 1219 aa19.97■□□□□ 0.79
USP4-206ENST00000461553 AKAP12Q02952 1782 aa19.97■□□□□ 0.79
USP4-206ENST00000461553 TONSLQ96HA7 1378 aa19.96■□□□□ 0.79
USP4-206ENST00000461553 FAM83GA6ND36 823 aa19.96■□□□□ 0.79
USP4-206ENST00000461553 CABP2Q9NPB3 220 aa19.95■□□□□ 0.78
USP4-206ENST00000461553 TRIM26Q12899 539 aaPredicted RBP19.94■□□□□ 0.78
USP4-206ENST00000461553 NBPF8Q3BBV2 869 aa19.94■□□□□ 0.78
USP4-206ENST00000461553 PRDM11Q9NQV5 511 aa19.94■□□□□ 0.78
USP4-206ENST00000461553 BTG4Q9NY30 223 aa19.94■□□□□ 0.78
USP4-206ENST00000461553 EVC2Q86UK5 1308 aa19.94■□□□□ 0.78
USP4-206ENST00000461553 BRD4O60885 1362 aaPredicted RBP19.92■□□□□ 0.78
USP4-206ENST00000461553 KIAA0232Q92628 1395 aa19.92■□□□□ 0.78
USP4-206ENST00000461553 USP6P35125 1406 aa19.92■□□□□ 0.78
USP4-206ENST00000461553 PIK3C2AO00443 1686 aa19.91■□□□□ 0.78
USP4-206ENST00000461553 NUTM2GQ5VZR2 741 aa19.91■□□□□ 0.78
USP4-206ENST00000461553 LMO7Q8WWI1 1683 aa19.91■□□□□ 0.78
USP4-206ENST00000461553 THSD7AQ9UPZ6 1657 aa19.91■□□□□ 0.78
USP4-206ENST00000461553 A0A0G2JS52 829 aa19.9■□□□□ 0.78
USP4-206ENST00000461553 MYT1Q01538 1121 aa19.9■□□□□ 0.78
USP4-206ENST00000461553 ABTB2Q8N961 1025 aa19.9■□□□□ 0.78
USP4-206ENST00000461553 MON2Q7Z3U7 1717 aa19.9■□□□□ 0.78
USP4-206ENST00000461553 SEPT12Q8IYM1 358 aa19.89■□□□□ 0.77
USP4-206ENST00000461553 SBNO2Q9Y2G9 1366 aa19.88■□□□□ 0.77
USP4-206ENST00000461553 USP19O94966 1318 aa19.88■□□□□ 0.77
USP4-206ENST00000461553 SLIT3O75094 1523 aa19.86■□□□□ 0.77
USP4-206ENST00000461553 BLMP54132 1417 aaPredicted RBP19.86■□□□□ 0.77
USP4-206ENST00000461553 CCDC125Q86Z20 511 aa19.86■□□□□ 0.77
USP4-206ENST00000461553 CARD11Q9BXL7 1154 aa19.86■□□□□ 0.77
USP4-206ENST00000461553 CABP1Q9NZU7 370 aa19.86■□□□□ 0.77
USP4-206ENST00000461553 RGPD1P0DJD0 1748 aa19.85■□□□□ 0.77
USP4-206ENST00000461553 SPATA31A5Q5VU36 1347 aa19.85■□□□□ 0.77
USP4-206ENST00000461553 SPATA31A7Q8IWB4 1347 aa19.85■□□□□ 0.77
USP4-206ENST00000461553 ZC3H6P61129 1189 aaKnown RBP19.85■□□□□ 0.77
USP4-206ENST00000461553 CHRNA2Q15822 529 aa19.85■□□□□ 0.77
USP4-206ENST00000461553 FAM98CQ17RN3 349 aaKnown RBP19.85■□□□□ 0.77
USP4-206ENST00000461553 NLRP13Q86W25 1043 aa19.85■□□□□ 0.77
USP4-206ENST00000461553 CPDO75976 1380 aa19.84■□□□□ 0.77
USP4-206ENST00000461553 ONECUT3O60422 494 aaPredicted RBP19.84■□□□□ 0.77
USP4-206ENST00000461553 KRT27Q7Z3Y8 459 aa19.84■□□□□ 0.77
USP4-206ENST00000461553 SSH2Q76I76 1423 aa19.83■□□□□ 0.76
USP4-206ENST00000461553 CAMTA1Q9Y6Y1 1673 aa19.82■□□□□ 0.76
USP4-206ENST00000461553 STRN4Q9NRL3 753 aa19.82■□□□□ 0.76
USP4-206ENST00000461553 USP54Q70EL1 1684 aa19.81■□□□□ 0.76
USP4-206ENST00000461553 WNK3Q9BYP7 1800 aa19.81■□□□□ 0.76
USP4-206ENST00000461553 SPATA31A1Q5TZJ5 1347 aa19.79■□□□□ 0.76
USP4-206ENST00000461553 SF3B2Q13435 895 aaKnown RBP19.79■□□□□ 0.76
USP4-206ENST00000461553 TNS1Q9HBL0 1735 aaKnown RBP19.79■□□□□ 0.76
USP4-206ENST00000461553 COL5A2P05997 1499 aaPredicted RBP19.79■□□□□ 0.76
USP4-206ENST00000461553 RGPD5Q99666 1765 aa19.78■□□□□ 0.76
USP4-206ENST00000461553 GCP02774 474 aa19.78■□□□□ 0.76
USP4-206ENST00000461553 NLRP6P59044 892 aa19.78■□□□□ 0.76
USP4-206ENST00000461553 COL18A1P39060 1754 aa19.78■□□□□ 0.76
USP4-206ENST00000461553 CPSF1Q10570 1443 aaKnown RBP19.77■□□□□ 0.76
USP4-206ENST00000461553 PARP4Q9UKK3 1724 aaKnown RBP19.77■□□□□ 0.76
USP4-206ENST00000461553 EVA1CP58658 441 aa19.77■□□□□ 0.76
USP4-206ENST00000461553 ZNF692Q9BU19 519 aaPredicted RBP19.77■□□□□ 0.76
USP4-206ENST00000461553 KTN1Q86UP2 1357 aaKnown RBP19.77■□□□□ 0.76
USP4-206ENST00000461553 TTC21AQ8NDW8 1320 aa19.76■□□□□ 0.75
USP4-206ENST00000461553 ZBTB7CA1YPR0 619 aa19.75■□□□□ 0.75
USP4-206ENST00000461553 LTN1O94822 1766 aa19.75■□□□□ 0.75
USP4-206ENST00000461553 TTC21BQ7Z4L5 1316 aa19.75■□□□□ 0.75
USP4-206ENST00000461553 USP35Q9P2H5 1018 aa19.74■□□□□ 0.75
USP4-206ENST00000461553 NFAT5O94916 1531 aa19.73■□□□□ 0.75
USP4-206ENST00000461553 ABCC6O95255 1503 aa19.73■□□□□ 0.75
USP4-206ENST00000461553 CD163L1Q9NR16 1453 aa19.73■□□□□ 0.75
USP4-206ENST00000461553 AATKQ6ZMQ8 1374 aa19.72■□□□□ 0.75
USP4-206ENST00000461553 CRB1P82279 1406 aa19.72■□□□□ 0.75
USP4-206ENST00000461553 LARP1Q6PKG0 1096 aaKnown RBP19.72■□□□□ 0.75
USP4-206ENST00000461553 ZRANB1Q9UGI0 708 aa19.72■□□□□ 0.75
USP4-206ENST00000461553 LRRC37A3O60309 1634 aa19.72■□□□□ 0.75
USP4-206ENST00000461553 BARGINQ6ZT62 677 aa19.71■□□□□ 0.75
USP4-206ENST00000461553 DEFB132Q7Z7B7 95 aa19.7■□□□□ 0.74
USP4-206ENST00000461553 TCP11L2Q8N4U5 519 aa19.7■□□□□ 0.74
USP4-206ENST00000461553 KCNH5Q8NCM2 988 aa19.7■□□□□ 0.74
USP4-206ENST00000461553 TMC1Q8TDI8 760 aa19.7■□□□□ 0.74
USP4-206ENST00000461553 BAG6P46379 1132 aa19.69■□□□□ 0.74
USP4-206ENST00000461553 HDGFL2Q7Z4V5 671 aaPredicted RBP19.69■□□□□ 0.74
USP4-206ENST00000461553 NINLQ9Y2I6 1382 aa19.69■□□□□ 0.74
USP4-206ENST00000461553 EDC4Q6P2E9 1401 aaKnown RBP19.68■□□□□ 0.74
USP4-206ENST00000461553 FAM182BQ5T319 152 aa19.68■□□□□ 0.74
USP4-206ENST00000461553 THRAP3Q9Y2W1 955 aaKnown RBP19.68■□□□□ 0.74
USP4-206ENST00000461553 SRCAPQ6ZRS2 3230 aa19.67■□□□□ 0.74
USP4-206ENST00000461553 SOX12O15370 315 aa19.67■□□□□ 0.74
USP4-206ENST00000461553 A0A1W2PP64 1363 aa19.67■□□□□ 0.74
USP4-206ENST00000461553 SUGP2Q8IX01 1082 aaKnown RBP eCLIP19.66■□□□□ 0.74
Retrieved 100 of 20,778 RNA–protein pairs in 10.2 ms