RNA–Protein interactions for RNA: ENST00000461437.5

NUP50-213, Transcript of nucleoporin 50, humanhuman

TSL 4

Gene NUP50, Length 531 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP50-213ENST00000461437 NRAPQ86VF7 1730 aa22.32■■□□□ 1.16
NUP50-213ENST00000461437 GJD4Q96KN9 370 aaPredicted RBP22.32■■□□□ 1.16
NUP50-213ENST00000461437 CABP2Q9NPB3 220 aa22.32■■□□□ 1.16
NUP50-213ENST00000461437 PHRF1Q9P1Y6 1649 aaKnown RBP22.31■■□□□ 1.16
NUP50-213ENST00000461437 FAM83GA6ND36 823 aa22.31■■□□□ 1.16
NUP50-213ENST00000461437 NBPF8Q3BBV2 869 aa22.31■■□□□ 1.16
NUP50-213ENST00000461437 NUTM2GQ5VZR2 741 aa22.31■■□□□ 1.16
NUP50-213ENST00000461437 SRPK2P78362 688 aaKnown RBP22.3■■□□□ 1.16
NUP50-213ENST00000461437 ACEP12821 1306 aa22.3■■□□□ 1.16
NUP50-213ENST00000461437 ROCK2O75116 1388 aaKnown RBP22.28■■□□□ 1.16
NUP50-213ENST00000461437 CCDC61Q9Y6R9 512 aa22.28■■□□□ 1.16
NUP50-213ENST00000461437 COL14A1Q05707 1796 aaKnown RBP22.27■■□□□ 1.16
NUP50-213ENST00000461437 PPIP5K1Q6PFW1 1433 aa22.27■■□□□ 1.16
NUP50-213ENST00000461437 POLR3AO14802 1390 aaPredicted RBP22.26■■□□□ 1.15
NUP50-213ENST00000461437 CCDC9Q9Y3X0 531 aaKnown RBP22.26■■□□□ 1.15
NUP50-213ENST00000461437 TRIM26Q12899 539 aaPredicted RBP22.25■■□□□ 1.15
NUP50-213ENST00000461437 BTG4Q9NY30 223 aa22.24■■□□□ 1.15
NUP50-213ENST00000461437 ATAD2Q6PL18 1390 aa22.24■■□□□ 1.15
NUP50-213ENST00000461437 PLEKHG3A1L390 1219 aa22.23■■□□□ 1.15
NUP50-213ENST00000461437 VPS72Q15906 364 aa22.23■■□□□ 1.15
NUP50-213ENST00000461437 EP400Q96L91 3159 aa22.22■■□□□ 1.15
NUP50-213ENST00000461437 CHRNA2Q15822 529 aa22.21■■□□□ 1.15
NUP50-213ENST00000461437 NRKQ7Z2Y5 1582 aa22.21■■□□□ 1.15
NUP50-213ENST00000461437 CABP1Q9NZU7 370 aa22.2■■□□□ 1.14
NUP50-213ENST00000461437 KIAA0232Q92628 1395 aa22.2■■□□□ 1.14
NUP50-213ENST00000461437 ZC3H6P61129 1189 aaKnown RBP22.19■■□□□ 1.14
NUP50-213ENST00000461437 SEPT12Q8IYM1 358 aa22.19■■□□□ 1.14
NUP50-213ENST00000461437 PRDM11Q9NQV5 511 aa22.19■■□□□ 1.14
NUP50-213ENST00000461437 TONSLQ96HA7 1378 aa22.19■■□□□ 1.14
NUP50-213ENST00000461437 ABTB2Q8N961 1025 aa22.17■■□□□ 1.14
NUP50-213ENST00000461437 AKAP12Q02952 1782 aa22.17■■□□□ 1.14
NUP50-213ENST00000461437 EVC2Q86UK5 1308 aa22.16■■□□□ 1.14
NUP50-213ENST00000461437 A0A0G2JS52 829 aa22.15■■□□□ 1.14
NUP50-213ENST00000461437 MYT1Q01538 1121 aa22.15■■□□□ 1.14
NUP50-213ENST00000461437 FAM98CQ17RN3 349 aaKnown RBP22.15■■□□□ 1.14
NUP50-213ENST00000461437 PIK3C2AO00443 1686 aa22.14■■□□□ 1.14
NUP50-213ENST00000461437 CARD11Q9BXL7 1154 aa22.14■■□□□ 1.13
NUP50-213ENST00000461437 USP6P35125 1406 aa22.14■■□□□ 1.13
NUP50-213ENST00000461437 STRN4Q9NRL3 753 aa22.13■■□□□ 1.13
NUP50-213ENST00000461437 LMO7Q8WWI1 1683 aa22.11■■□□□ 1.13
NUP50-213ENST00000461437 USP19O94966 1318 aa22.1■■□□□ 1.13
NUP50-213ENST00000461437 CAMTA1Q9Y6Y1 1673 aa22.1■■□□□ 1.13
NUP50-213ENST00000461437 SPATA31A5Q5VU36 1347 aa22.09■■□□□ 1.13
NUP50-213ENST00000461437 SPATA31A7Q8IWB4 1347 aa22.09■■□□□ 1.13
NUP50-213ENST00000461437 ZBTB7CA1YPR0 619 aa22.09■■□□□ 1.13
NUP50-213ENST00000461437 ONECUT3O60422 494 aaPredicted RBP22.09■■□□□ 1.13
NUP50-213ENST00000461437 THSD7AQ9UPZ6 1657 aa22.08■■□□□ 1.13
NUP50-213ENST00000461437 FAM182BQ5T319 152 aa22.08■■□□□ 1.13
NUP50-213ENST00000461437 KRT27Q7Z3Y8 459 aa22.08■■□□□ 1.13
NUP50-213ENST00000461437 SRCAPQ6ZRS2 3230 aa22.08■■□□□ 1.12
NUP50-213ENST00000461437 SSH2Q76I76 1423 aa22.07■■□□□ 1.12
NUP50-213ENST00000461437 MON2Q7Z3U7 1717 aa22.07■■□□□ 1.12
NUP50-213ENST00000461437 NLRP13Q86W25 1043 aa22.07■■□□□ 1.12
NUP50-213ENST00000461437 GCP02774 474 aa22.06■■□□□ 1.12
NUP50-213ENST00000461437 NLRP6P59044 892 aa22.06■■□□□ 1.12
NUP50-213ENST00000461437 USP35Q9P2H5 1018 aa22.06■■□□□ 1.12
NUP50-213ENST00000461437 RGPD5Q99666 1765 aa22.06■■□□□ 1.12
NUP50-213ENST00000461437 SLIT3O75094 1523 aa22.05■■□□□ 1.12
NUP50-213ENST00000461437 SPATA31A1Q5TZJ5 1347 aa22.05■■□□□ 1.12
NUP50-213ENST00000461437 DEFB132Q7Z7B7 95 aa22.04■■□□□ 1.12
NUP50-213ENST00000461437 SOX12O15370 315 aa22.03■■□□□ 1.12
NUP50-213ENST00000461437 BLMP54132 1417 aaPredicted RBP22.03■■□□□ 1.12
NUP50-213ENST00000461437 TTC21BQ7Z4L5 1316 aa22.03■■□□□ 1.12
NUP50-213ENST00000461437 COL18A1P39060 1754 aa22.02■■□□□ 1.12
NUP50-213ENST00000461437 CPDO75976 1380 aa22.02■■□□□ 1.12
NUP50-213ENST00000461437 EVA1CP58658 441 aa22.02■■□□□ 1.12
NUP50-213ENST00000461437 LARP1Q6PKG0 1096 aaKnown RBP22.02■■□□□ 1.12
NUP50-213ENST00000461437 BRD4O60885 1362 aaPredicted RBP22.01■■□□□ 1.11
NUP50-213ENST00000461437 SBNO2Q9Y2G9 1366 aa22.01■■□□□ 1.11
NUP50-213ENST00000461437 CPSF1Q10570 1443 aaKnown RBP22.01■■□□□ 1.11
NUP50-213ENST00000461437 KTN1Q86UP2 1357 aaKnown RBP22■■□□□ 1.11
NUP50-213ENST00000461437 ZRANB1Q9UGI0 708 aa22■■□□□ 1.11
NUP50-213ENST00000461437 CD163L1Q9NR16 1453 aa22■■□□□ 1.11
NUP50-213ENST00000461437 TMC1Q8TDI8 760 aa21.99■■□□□ 1.11
NUP50-213ENST00000461437 COL5A2P05997 1499 aaPredicted RBP21.98■■□□□ 1.11
NUP50-213ENST00000461437 CCDC125Q86Z20 511 aa21.98■■□□□ 1.11
NUP50-213ENST00000461437 PCGF6Q9BYE7 350 aa21.98■■□□□ 1.11
NUP50-213ENST00000461437 SUGP2Q8IX01 1082 aaKnown RBP eCLIP21.97■■□□□ 1.11
NUP50-213ENST00000461437 SLC12A5Q9H2X9 1139 aa21.97■■□□□ 1.11
NUP50-213ENST00000461437 RGPD1P0DJD0 1748 aa21.97■■□□□ 1.11
NUP50-213ENST00000461437 ST20-MTHFSA0A0A6YYL1 179 aa21.96■■□□□ 1.11
NUP50-213ENST00000461437 ZNF692Q9BU19 519 aaPredicted RBP21.96■■□□□ 1.11
NUP50-213ENST00000461437 TNS1Q9HBL0 1735 aaKnown RBP21.96■■□□□ 1.11
NUP50-213ENST00000461437 SF3B2Q13435 895 aaKnown RBP21.94■■□□□ 1.1
NUP50-213ENST00000461437 TESK2Q96S53 571 aa21.94■■□□□ 1.1
NUP50-213ENST00000461437 WNK3Q9BYP7 1800 aa21.94■■□□□ 1.1
NUP50-213ENST00000461437 LTN1O94822 1766 aa21.93■■□□□ 1.1
NUP50-213ENST00000461437 NFAT5O94916 1531 aa21.93■■□□□ 1.1
NUP50-213ENST00000461437 NME9Q86XW9 330 aa21.93■■□□□ 1.1
NUP50-213ENST00000461437 TTC21AQ8NDW8 1320 aa21.93■■□□□ 1.1
NUP50-213ENST00000461437 AXIN2Q9Y2T1 843 aa21.93■■□□□ 1.1
NUP50-213ENST00000461437 PARP4Q9UKK3 1724 aaKnown RBP21.92■■□□□ 1.1
NUP50-213ENST00000461437 AATKQ6ZMQ8 1374 aa21.91■■□□□ 1.1
NUP50-213ENST00000461437 TCP11L2Q8N4U5 519 aa21.91■■□□□ 1.1
NUP50-213ENST00000461437 USP54Q70EL1 1684 aa21.91■■□□□ 1.1
NUP50-213ENST00000461437 A0A1W2PP64 1363 aa21.9■■□□□ 1.1
NUP50-213ENST00000461437 CRB1P82279 1406 aa21.89■■□□□ 1.1
NUP50-213ENST00000461437 BARGINQ6ZT62 677 aa21.89■■□□□ 1.09
NUP50-213ENST00000461437 ARHGEF25Q86VW2 580 aa21.89■■□□□ 1.09
NUP50-213ENST00000461437 LRRC37A3O60309 1634 aa21.88■■□□□ 1.09
Retrieved 100 of 20,778 RNA–protein pairs in 22 ms