RNA–Protein interactions for RNA: ENST00000460928.1

ATPAF1-203, Transcript of ATP synthase mitochondrial F1 complex assembly factor 1, humanhuman

TSL 2

Gene ATPAF1, Length 869 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
ATPAF1-203ENST00000460928 C11orf95C9JLR9 678 aaPredicted RBP8.77□□□□□ -1.01
ATPAF1-203ENST00000460928 PRPF38BQ5VTL8 546 aaKnown RBP8.77□□□□□ -1.01
ATPAF1-203ENST00000460928 ALDH1A1P00352 501 aa8.76□□□□□ -1.01
ATPAF1-203ENST00000460928 LYPD8Q6UX82 237 aa8.75□□□□□ -1.01
ATPAF1-203ENST00000460928 ZBTB3Q9H5J0 574 aa8.75□□□□□ -1.01
ATPAF1-203ENST00000460928 SENP2Q9HC62 589 aa8.75□□□□□ -1.01
ATPAF1-203ENST00000460928 PCDHB15Q9Y5E8 787 aa8.75□□□□□ -1.01
ATPAF1-203ENST00000460928 HRCP23327 699 aa8.74□□□□□ -1.01
ATPAF1-203ENST00000460928 PDE4DQ08499 809 aa8.74□□□□□ -1.01
ATPAF1-203ENST00000460928 TUSC1Q2TAM9 212 aa8.74□□□□□ -1.01
ATPAF1-203ENST00000460928 TRIM47Q96LD4 638 aa8.74□□□□□ -1.01
ATPAF1-203ENST00000460928 CFAP99D6REC4 459 aa8.73□□□□□ -1.01
ATPAF1-203ENST00000460928 RIC3Q7Z5B4 369 aa8.73□□□□□ -1.01
ATPAF1-203ENST00000460928 MPNDQ8N594 471 aa8.73□□□□□ -1.01
ATPAF1-203ENST00000460928 ZNF511Q8NB15 262 aa8.73□□□□□ -1.01
ATPAF1-203ENST00000460928 BAP1Q92560 729 aa8.73□□□□□ -1.01
ATPAF1-203ENST00000460928 WFS1O76024 890 aa8.72□□□□□ -1.01
ATPAF1-203ENST00000460928 VARSP26640 1264 aaKnown RBP8.72□□□□□ -1.01
ATPAF1-203ENST00000460928 KIFC2Q96AC6 838 aa8.72□□□□□ -1.01
ATPAF1-203ENST00000460928 F12P00748 615 aaPredicted RBP8.71□□□□□ -1.02
ATPAF1-203ENST00000460928 LINC01559Q495D7 138 aa8.71□□□□□ -1.02
ATPAF1-203ENST00000460928 WASF2Q9Y6W5 498 aa8.71□□□□□ -1.02
ATPAF1-203ENST00000460928 MYSM1Q5VVJ2 828 aa8.7□□□□□ -1.02
ATPAF1-203ENST00000460928 SNRPBP14678 240 aaKnown RBP8.69□□□□□ -1.02
ATPAF1-203ENST00000460928 NFX1Q12986 1120 aaKnown RBP8.69□□□□□ -1.02
ATPAF1-203ENST00000460928 SLC24A3Q9HC58 644 aa8.69□□□□□ -1.02
ATPAF1-203ENST00000460928 PLEKHG3A1L390 1219 aa8.68□□□□□ -1.02
ATPAF1-203ENST00000460928 CTHP32929 405 aa8.68□□□□□ -1.02
ATPAF1-203ENST00000460928 CABLES1Q8TDN4 633 aa8.68□□□□□ -1.02
ATPAF1-203ENST00000460928 LIMD1Q9UGP4 676 aa8.68□□□□□ -1.02
ATPAF1-203ENST00000460928 LILRB3O75022 631 aa8.67□□□□□ -1.02
ATPAF1-203ENST00000460928 EIF4G1Q04637 1599 aaKnown RBP8.67□□□□□ -1.02
ATPAF1-203ENST00000460928 TLL2Q9Y6L7 1015 aa8.67□□□□□ -1.02
ATPAF1-203ENST00000460928 CAPN5O15484 640 aaPredicted RBP8.66□□□□□ -1.02
ATPAF1-203ENST00000460928 WIPF1O43516 503 aa8.66□□□□□ -1.02
ATPAF1-203ENST00000460928 MAP10Q9P2G4 905 aa8.66□□□□□ -1.02
ATPAF1-203ENST00000460928 QPCTQ16769 361 aa8.65□□□□□ -1.02
ATPAF1-203ENST00000460928 TRIM46Q7Z4K8 759 aa8.65□□□□□ -1.02
ATPAF1-203ENST00000460928 FAM174AQ8TBP5 190 aa8.65□□□□□ -1.02
ATPAF1-203ENST00000460928 PER1O15534 1290 aaPredicted RBP8.64□□□□□ -1.03
ATPAF1-203ENST00000460928 CSPP1Q1MSJ5 1256 aa8.64□□□□□ -1.03
ATPAF1-203ENST00000460928 CDK15Q96Q40 435 aa8.64□□□□□ -1.03
ATPAF1-203ENST00000460928 RSPH6AQ9H0K4 717 aa8.64□□□□□ -1.03
ATPAF1-203ENST00000460928 NUTM2BA6NNL0 878 aaPredicted RBP8.63□□□□□ -1.03
ATPAF1-203ENST00000460928 NUTM2EB1AL46 878 aaPredicted RBP8.63□□□□□ -1.03
ATPAF1-203ENST00000460928 TERTO14746 1132 aaKnown RBP8.63□□□□□ -1.03
ATPAF1-203ENST00000460928 CLK2P49760 499 aaKnown RBP8.63□□□□□ -1.03
ATPAF1-203ENST00000460928 NNTQ13423 1086 aa8.63□□□□□ -1.03
ATPAF1-203ENST00000460928 NUTM2DQ5VT03 806 aaPredicted RBP8.63□□□□□ -1.03
ATPAF1-203ENST00000460928 NUTM2AQ8IVF1 878 aaPredicted RBP8.63□□□□□ -1.03
ATPAF1-203ENST00000460928 ADH1CP00326 375 aa8.62□□□□□ -1.03
ATPAF1-203ENST00000460928 BMP1P13497 986 aa8.62□□□□□ -1.03
ATPAF1-203ENST00000460928 INSM1Q01101 510 aaPredicted RBP8.62□□□□□ -1.03
ATPAF1-203ENST00000460928 ARMC2Q8NEN0 867 aa8.62□□□□□ -1.03
ATPAF1-203ENST00000460928 FOXJ1Q92949 421 aa8.62□□□□□ -1.03
ATPAF1-203ENST00000460928 STK17AQ9UEE5 414 aa8.62□□□□□ -1.03
ATPAF1-203ENST00000460928 HELBQ8NG08 1087 aaPredicted RBP8.61□□□□□ -1.03
ATPAF1-203ENST00000460928 KLF16Q9BXK1 252 aaPredicted RBP8.61□□□□□ -1.03
ATPAF1-203ENST00000460928 BPHLQ86WA6 291 aaPredicted RBP8.6□□□□□ -1.03
ATPAF1-203ENST00000460928 GTF3C3Q9Y5Q9 886 aa8.6□□□□□ -1.03
ATPAF1-203ENST00000460928 ERCC6Q03468 1493 aa8.59□□□□□ -1.03
ATPAF1-203ENST00000460928 TIMP2P16035 220 aa8.59□□□□□ -1.03
ATPAF1-203ENST00000460928 C4orf48Q5BLP8 95 aa8.59□□□□□ -1.03
ATPAF1-203ENST00000460928 RTL5Q5HYW3 569 aaPredicted RBP8.59□□□□□ -1.03
ATPAF1-203ENST00000460928 SH3RF1Q7Z6J0 888 aa8.59□□□□□ -1.03
ATPAF1-203ENST00000460928 TSC1Q92574 1164 aa8.59□□□□□ -1.03
ATPAF1-203ENST00000460928 NR5A1Q13285 461 aa8.58□□□□□ -1.04
ATPAF1-203ENST00000460928 LCE2CQ5TA81 110 aa8.58□□□□□ -1.04
ATPAF1-203ENST00000460928 NBPF14Q5TI25 921 aa8.58□□□□□ -1.04
ATPAF1-203ENST00000460928 NPAS3Q8IXF0 933 aa8.58□□□□□ -1.04
ATPAF1-203ENST00000460928 C1QTNF2Q9BXJ5 285 aa8.58□□□□□ -1.04
ATPAF1-203ENST00000460928 WDR4P57081 412 aaKnown RBP8.57□□□□□ -1.04
ATPAF1-203ENST00000460928 TMEM132AQ24JP5 1023 aa8.57□□□□□ -1.04
ATPAF1-203ENST00000460928 MRPL14Q6P1L8 145 aaKnown RBP8.57□□□□□ -1.04
ATPAF1-203ENST00000460928 ZFP42Q96MM3 310 aa8.57□□□□□ -1.04
ATPAF1-203ENST00000460928 NXF1Q9UBU9 619 aaKnown RBP8.57□□□□□ -1.04
ATPAF1-203ENST00000460928 AGERQ15109 404 aa8.56□□□□□ -1.04
ATPAF1-203ENST00000460928 SH3BP5LQ7L8J4 393 aa8.56□□□□□ -1.04
ATPAF1-203ENST00000460928 GPKOWQ92917 476 aaPredicted RBP eCLIP8.56□□□□□ -1.04
ATPAF1-203ENST00000460928 MAP4K5Q9Y4K4 846 aa8.56□□□□□ -1.04
ATPAF1-203ENST00000460928 GRM5P41594 1212 aa8.55□□□□□ -1.04
ATPAF1-203ENST00000460928 TRMT44Q8IYL2 757 aaKnown RBP8.55□□□□□ -1.04
ATPAF1-203ENST00000460928 POLR3EQ9NVU0 708 aa8.55□□□□□ -1.04
ATPAF1-203ENST00000460928 NR3C2P08235 984 aa8.54□□□□□ -1.04
ATPAF1-203ENST00000460928 SCARF1Q14162 830 aa8.54□□□□□ -1.04
ATPAF1-203ENST00000460928 ARID5BQ14865 1188 aa8.54□□□□□ -1.04
ATPAF1-203ENST00000460928 SKIV2LQ15477 1246 aaKnown RBP8.54□□□□□ -1.04
ATPAF1-203ENST00000460928 SH3D19Q5HYK7 790 aa8.54□□□□□ -1.04
ATPAF1-203ENST00000460928 SLC16A10Q8TF71 515 aa8.54□□□□□ -1.04
ATPAF1-203ENST00000460928 MROH2BQ7Z745 1585 aa8.53□□□□□ -1.04
ATPAF1-203ENST00000460928 DDRGK1Q96HY6 314 aa8.53□□□□□ -1.04
ATPAF1-203ENST00000460928 TIMELESSQ9UNS1 1208 aa8.53□□□□□ -1.04
ATPAF1-203ENST00000460928 ZIC2O95409 532 aaPredicted RBP8.52□□□□□ -1.05
ATPAF1-203ENST00000460928 PPP2R2DQ66LE6 453 aa8.52□□□□□ -1.05
ATPAF1-203ENST00000460928 ITPKCQ96DU7 683 aa8.52□□□□□ -1.05
ATPAF1-203ENST00000460928 GNL3Q9BVP2 549 aaKnown RBP eCLIP8.52□□□□□ -1.05
ATPAF1-203ENST00000460928 KDM4CQ9H3R0 1056 aa8.52□□□□□ -1.05
ATPAF1-203ENST00000460928 SMARCA4P51532 1647 aa8.51□□□□□ -1.05
ATPAF1-203ENST00000460928 CTDSPL2Q05D32 466 aa8.51□□□□□ -1.05
ATPAF1-203ENST00000460928 PURBQ96QR8 312 aaKnown RBP8.51□□□□□ -1.05
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms