RNA–Protein interactions for RNA: ENST00000460912.6

SYNE1-215, Transcript of spectrin repeat containing nuclear envelope protein 1, human

TSL 1 (best)

Gene SYNE1, Length 3,664 nt, Biotype processed transcript, Subcellular localisation Nucleus .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SYNE1-215	ENST00000460912	DLG5	Q8TDM6	1919 aa		11.66	□□□□□ -0.54
SYNE1-215	ENST00000460912	LMO7	Q8WWI1	1683 aa		11.66	□□□□□ -0.54
SYNE1-215	ENST00000460912	COL18A1	P39060	1754 aa		11.66	□□□□□ -0.54
SYNE1-215	ENST00000460912	C20orf194	Q5TEA3	1177 aa		11.66	□□□□□ -0.54
SYNE1-215	ENST00000460912	POLR3GL	Q9BT43	218 aa		11.66	□□□□□ -0.54
SYNE1-215	ENST00000460912	PNPLA6	Q8IY17	1366 aa		11.66	□□□□□ -0.54
SYNE1-215	ENST00000460912	CENPJ	Q9HC77	1338 aa	Predicted RBP	11.65	□□□□□ -0.54
SYNE1-215	ENST00000460912	MS4A1	P11836	297 aa		11.65	□□□□□ -0.54
SYNE1-215	ENST00000460912	MAP2	P11137	1827 aa	Known RBP	11.64	□□□□□ -0.55
SYNE1-215	ENST00000460912	TMEM132E	Q6IEE7	984 aa		11.64	□□□□□ -0.55
SYNE1-215	ENST00000460912	NGEF	Q8N5V2	710 aa		11.64	□□□□□ -0.55
SYNE1-215	ENST00000460912	KNSTRN	Q9Y448	316 aa		11.64	□□□□□ -0.55
SYNE1-215	ENST00000460912	LTN1	O94822	1766 aa		11.63	□□□□□ -0.55
SYNE1-215	ENST00000460912	BACH2	Q9BYV9	841 aa		11.63	□□□□□ -0.55
SYNE1-215	ENST00000460912	SLIT3	O75094	1523 aa		11.63	□□□□□ -0.55
SYNE1-215	ENST00000460912	CCDC27	Q2M243	656 aa		11.62	□□□□□ -0.55
SYNE1-215	ENST00000460912	SENP3-EIF4A1	A0A087X0R7	540 aa		11.62	□□□□□ -0.55
SYNE1-215	ENST00000460912	TXNDC2	Q86VQ3	553 aa		11.62	□□□□□ -0.55
SYNE1-215	ENST00000460912	NUTM2D	Q5VT03	806 aa	Predicted RBP	11.61	□□□□□ -0.55
SYNE1-215	ENST00000460912	CCDC136	Q96JN2	1154 aa		11.61	□□□□□ -0.55
SYNE1-215	ENST00000460912	CRBN	Q96SW2	442 aa		11.61	□□□□□ -0.55
SYNE1-215	ENST00000460912	NFAT5	O94916	1531 aa		11.61	□□□□□ -0.55
SYNE1-215	ENST00000460912	TCERG1	O14776	1098 aa	Known RBP	11.61	□□□□□ -0.55
SYNE1-215	ENST00000460912	ESF1	Q9H501	851 aa	Known RBP	11.61	□□□□□ -0.55
SYNE1-215	ENST00000460912	PRR36	Q9H6K5	1346 aa		11.6	□□□□□ -0.55
SYNE1-215	ENST00000460912	PAK3	O75914	559 aa	Predicted RBP	11.6	□□□□□ -0.55
SYNE1-215	ENST00000460912		A0A1W2PP64	1363 aa		11.6	□□□□□ -0.55
SYNE1-215	ENST00000460912	WNK3	Q9BYP7	1800 aa		11.6	□□□□□ -0.55
SYNE1-215	ENST00000460912	AHDC1	Q5TGY3	1603 aa	Predicted RBP	11.6	□□□□□ -0.55
SYNE1-215	ENST00000460912	HDGF	P51858	240 aa	Known RBP	11.59	□□□□□ -0.55
SYNE1-215	ENST00000460912	PLEKHF1	Q96S99	279 aa		11.59	□□□□□ -0.55
SYNE1-215	ENST00000460912	PXDN	Q92626	1479 aa		11.59	□□□□□ -0.55
SYNE1-215	ENST00000460912	NCKAP5L	Q9HCH0	1330 aa		11.59	□□□□□ -0.55
SYNE1-215	ENST00000460912	PLIN1	O60240	522 aa		11.59	□□□□□ -0.55
SYNE1-215	ENST00000460912	GOLGA2	Q08379	1002 aa		11.58	□□□□□ -0.56
SYNE1-215	ENST00000460912	ANKLE2	Q86XL3	938 aa		11.58	□□□□□ -0.56
SYNE1-215	ENST00000460912	N4BP2	Q86UW6	1770 aa	Predicted RBP	11.58	□□□□□ -0.56
SYNE1-215	ENST00000460912	ABCC6	O95255	1503 aa		11.57	□□□□□ -0.56
SYNE1-215	ENST00000460912	PPIP5K1	Q6PFW1	1433 aa		11.57	□□□□□ -0.56
SYNE1-215	ENST00000460912	OVOS2	A0A0J9YW53	1432 aa		11.57	□□□□□ -0.56
SYNE1-215	ENST00000460912	OVOS2	Q6IE36	1432 aa		11.57	□□□□□ -0.56
SYNE1-215	ENST00000460912	KCNA6	P17658	529 aa		11.57	□□□□□ -0.56
SYNE1-215	ENST00000460912	WWC1	Q8IX03	1113 aa		11.57	□□□□□ -0.56
SYNE1-215	ENST00000460912	EIF5B	O60841	1220 aa	Known RBP	11.56	□□□□□ -0.56
SYNE1-215	ENST00000460912	IPO9	Q96P70	1041 aa	Known RBP	11.56	□□□□□ -0.56
SYNE1-215	ENST00000460912	PRAM1	Q96QH2	718 aa		11.56	□□□□□ -0.56
SYNE1-215	ENST00000460912	SLC12A5	Q9H2X9	1139 aa		11.56	□□□□□ -0.56
SYNE1-215	ENST00000460912	ATAD2	Q6PL18	1390 aa		11.56	□□□□□ -0.56
SYNE1-215	ENST00000460912	TUBGCP6	Q96RT7	1819 aa		11.55	□□□□□ -0.56
SYNE1-215	ENST00000460912	RGPD5	Q99666	1765 aa		11.55	□□□□□ -0.56
SYNE1-215	ENST00000460912	CNGB1	Q14028	1251 aa	Predicted RBP	11.55	□□□□□ -0.56
SYNE1-215	ENST00000460912	C8orf34	Q49A92	452 aa		11.55	□□□□□ -0.56
SYNE1-215	ENST00000460912	ADAMTS7	Q9UKP4	1686 aa		11.55	□□□□□ -0.56
SYNE1-215	ENST00000460912	COL16A1	Q07092	1604 aa	Predicted RBP	11.54	□□□□□ -0.56
SYNE1-215	ENST00000460912	FAM208A	Q9UK61	1670 aa	Known RBP	11.54	□□□□□ -0.56
SYNE1-215	ENST00000460912	ROBO1	Q9Y6N7	1651 aa		11.54	□□□□□ -0.56
SYNE1-215	ENST00000460912		E9PSI1	815 aa		11.54	□□□□□ -0.56
SYNE1-215	ENST00000460912	CHGA	P10645	457 aa	Known RBP	11.54	□□□□□ -0.56
SYNE1-215	ENST00000460912	TRAK1	Q9UPV9	953 aa		11.54	□□□□□ -0.56
SYNE1-215	ENST00000460912	EID1	Q9Y6B2	187 aa		11.54	□□□□□ -0.56
SYNE1-215	ENST00000460912	PDE4A	P27815	886 aa		11.54	□□□□□ -0.56
SYNE1-215	ENST00000460912	WAPL	Q7Z5K2	1190 aa		11.54	□□□□□ -0.56
SYNE1-215	ENST00000460912	AMOTL2	Q9Y2J4	779 aa		11.54	□□□□□ -0.56
SYNE1-215	ENST00000460912	EDC4	Q6P2E9	1401 aa	Known RBP	11.54	□□□□□ -0.56
SYNE1-215	ENST00000460912	LRRC37A3	O60309	1634 aa		11.53	□□□□□ -0.56
SYNE1-215	ENST00000460912	PLEKHG3	A1L390	1219 aa		11.53	□□□□□ -0.56
SYNE1-215	ENST00000460912	APAF1	O14727	1248 aa		11.53	□□□□□ -0.56
SYNE1-215	ENST00000460912	USP6	P35125	1406 aa		11.53	□□□□□ -0.56
SYNE1-215	ENST00000460912	WASL	O00401	505 aa	Predicted RBP	11.53	□□□□□ -0.56
SYNE1-215	ENST00000460912	RGPD2	P0DJD1	1756 aa		11.53	□□□□□ -0.56
SYNE1-215	ENST00000460912	USP19	O94966	1318 aa		11.53	□□□□□ -0.56
SYNE1-215	ENST00000460912	USP31	Q70CQ4	1352 aa		11.53	□□□□□ -0.56
SYNE1-215	ENST00000460912	SHANK3	Q9BYB0	1731 aa		11.53	□□□□□ -0.56
SYNE1-215	ENST00000460912	C1orf167	Q5SNV9	1468 aa		11.53	□□□□□ -0.56
SYNE1-215	ENST00000460912	CENPQ	Q7L2Z9	268 aa	Predicted RBP	11.52	□□□□□ -0.57
SYNE1-215	ENST00000460912	WDR63	Q8IWG1	891 aa		11.52	□□□□□ -0.57
SYNE1-215	ENST00000460912	NOP58	Q9Y2X3	529 aa	Known RBP	11.52	□□□□□ -0.57
SYNE1-215	ENST00000460912	NRAP	Q86VF7	1730 aa		11.52	□□□□□ -0.57
SYNE1-215	ENST00000460912	PLCH1	Q4KWH8	1693 aa		11.51	□□□□□ -0.57
SYNE1-215	ENST00000460912	PDE3A	Q14432	1141 aa		11.51	□□□□□ -0.57
SYNE1-215	ENST00000460912	SKAP1	Q86WV1	359 aa		11.51	□□□□□ -0.57
SYNE1-215	ENST00000460912	EVC2	Q86UK5	1308 aa		11.51	□□□□□ -0.57
SYNE1-215	ENST00000460912	NCAPD2	Q15021	1401 aa		11.51	□□□□□ -0.57
SYNE1-215	ENST00000460912	WDR43	Q15061	677 aa	Known RBP eCLIP	11.5	□□□□□ -0.57
SYNE1-215	ENST00000460912	CCDC146	Q8IYE0	955 aa		11.5	□□□□□ -0.57
SYNE1-215	ENST00000460912	CDK12	Q9NYV4	1490 aa	Predicted RBP	11.5	□□□□□ -0.57
SYNE1-215	ENST00000460912	CGNL1	Q0VF96	1302 aa		11.5	□□□□□ -0.57
SYNE1-215	ENST00000460912	SLC26A8	Q96RN1	970 aa		11.5	□□□□□ -0.57
SYNE1-215	ENST00000460912	BCAR3	O75815	825 aa		11.5	□□□□□ -0.57
SYNE1-215	ENST00000460912	RUNDC1	Q96C34	613 aa		11.5	□□□□□ -0.57
SYNE1-215	ENST00000460912	CDK19	Q9BWU1	502 aa		11.49	□□□□□ -0.57
SYNE1-215	ENST00000460912	SIPA1L3	O60292	1781 aa	Predicted RBP	11.49	□□□□□ -0.57
SYNE1-215	ENST00000460912	SALL2	Q9Y467	1007 aa	Predicted RBP	11.49	□□□□□ -0.57
SYNE1-215	ENST00000460912	RARS	P54136	660 aa	Known RBP	11.48	□□□□□ -0.57
SYNE1-215	ENST00000460912	TRIM35	Q9UPQ4	493 aa		11.48	□□□□□ -0.57
SYNE1-215	ENST00000460912	ANO8	Q9HCE9	1232 aa	Predicted RBP	11.48	□□□□□ -0.57
SYNE1-215	ENST00000460912	IGHD	P01880	384 aa		11.47	□□□□□ -0.57
SYNE1-215	ENST00000460912	FYB1	O15117	783 aa		11.47	□□□□□ -0.57
SYNE1-215	ENST00000460912	RTN4	Q9NQC3	1192 aa	Known RBP	11.47	□□□□□ -0.57
SYNE1-215	ENST00000460912	STAG3	Q9UJ98	1225 aa		11.47	□□□□□ -0.57

Retrieved 100 of 20,778 RNA–protein pairs in 36 ms