RNA–Protein interactions for RNA: ENST00000456246.1

MSH6-207, Transcript of mutS homolog 6, humanhuman

TSL 3

Gene MSH6, Length 846 nt, Biotype nonsense mediated decay, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
MSH6-207ENST00000456246 GJD4Q96KN9 370 aaPredicted RBP25.52■■□□□ 1.68
MSH6-207ENST00000456246 ACEP12821 1306 aa25.52■■□□□ 1.68
MSH6-207ENST00000456246 PLCH1Q4KWH8 1693 aa25.51■■□□□ 1.67
MSH6-207ENST00000456246 PPIP5K1Q6PFW1 1433 aa25.5■■□□□ 1.67
MSH6-207ENST00000456246 UPF1Q92900 1129 aaKnown RBP eCLIP25.5■■□□□ 1.67
MSH6-207ENST00000456246 BRD4O60885 1362 aaPredicted RBP25.49■■□□□ 1.67
MSH6-207ENST00000456246 EVC2Q86UK5 1308 aa25.49■■□□□ 1.67
MSH6-207ENST00000456246 NBPF8Q3BBV2 869 aa25.49■■□□□ 1.67
MSH6-207ENST00000456246 CRYBG1Q9Y4K1 1723 aa25.49■■□□□ 1.67
MSH6-207ENST00000456246 PLEKHG5O94827 1062 aa25.48■■□□□ 1.67
MSH6-207ENST00000456246 ATAD2Q6PL18 1390 aa25.47■■□□□ 1.67
MSH6-207ENST00000456246 RALGAPBQ86X10 1494 aa25.47■■□□□ 1.67
MSH6-207ENST00000456246 COL14A1Q05707 1796 aaKnown RBP25.46■■□□□ 1.67
MSH6-207ENST00000456246 CABP2Q9NPB3 220 aa25.46■■□□□ 1.67
MSH6-207ENST00000456246 VPS72Q15906 364 aa25.45■■□□□ 1.66
MSH6-207ENST00000456246 FAM83GA6ND36 823 aa25.44■■□□□ 1.66
MSH6-207ENST00000456246 GLI3P10071 1580 aa25.44■■□□□ 1.66
MSH6-207ENST00000456246 SBNO2Q9Y2G9 1366 aa25.44■■□□□ 1.66
MSH6-207ENST00000456246 CARD11Q9BXL7 1154 aa25.43■■□□□ 1.66
MSH6-207ENST00000456246 PHRF1Q9P1Y6 1649 aaKnown RBP25.41■■□□□ 1.66
MSH6-207ENST00000456246 NRAPQ86VF7 1730 aa25.4■■□□□ 1.66
MSH6-207ENST00000456246 ABTB2Q8N961 1025 aa25.39■■□□□ 1.66
MSH6-207ENST00000456246 PRDM11Q9NQV5 511 aa25.39■■□□□ 1.66
MSH6-207ENST00000456246 CABP1Q9NZU7 370 aa25.39■■□□□ 1.66
MSH6-207ENST00000456246 USP6P35125 1406 aa25.38■■□□□ 1.65
MSH6-207ENST00000456246 BTG4Q9NY30 223 aa25.38■■□□□ 1.65
MSH6-207ENST00000456246 CCDC9Q9Y3X0 531 aaKnown RBP25.38■■□□□ 1.65
MSH6-207ENST00000456246 USP19O94966 1318 aa25.36■■□□□ 1.65
MSH6-207ENST00000456246 KIAA0232Q92628 1395 aa25.35■■□□□ 1.65
MSH6-207ENST00000456246 NLRP13Q86W25 1043 aa25.35■■□□□ 1.65
MSH6-207ENST00000456246 ONECUT3O60422 494 aaPredicted RBP25.34■■□□□ 1.65
MSH6-207ENST00000456246 ZNF692Q9BU19 519 aaPredicted RBP25.34■■□□□ 1.65
MSH6-207ENST00000456246 NRKQ7Z2Y5 1582 aa25.34■■□□□ 1.65
MSH6-207ENST00000456246 NUTM2GQ5VZR2 741 aa25.33■■□□□ 1.65
MSH6-207ENST00000456246 CPDO75976 1380 aa25.31■■□□□ 1.64
MSH6-207ENST00000456246 SSH2Q76I76 1423 aa25.3■■□□□ 1.64
MSH6-207ENST00000456246 CCDC125Q86Z20 511 aa25.3■■□□□ 1.64
MSH6-207ENST00000456246 SEPT12Q8IYM1 358 aa25.3■■□□□ 1.64
MSH6-207ENST00000456246 CLSPNQ9HAW4 1339 aa25.3■■□□□ 1.64
MSH6-207ENST00000456246 AKAP12Q02952 1782 aa25.29■■□□□ 1.64
MSH6-207ENST00000456246 ZC3H6P61129 1189 aaKnown RBP25.29■■□□□ 1.64
MSH6-207ENST00000456246 SLC24A1O60721 1099 aa25.28■■□□□ 1.64
MSH6-207ENST00000456246 SPATA31A5Q5VU36 1347 aa25.28■■□□□ 1.64
MSH6-207ENST00000456246 SPATA31A7Q8IWB4 1347 aa25.28■■□□□ 1.64
MSH6-207ENST00000456246 EP400Q96L91 3159 aa25.27■■□□□ 1.64
MSH6-207ENST00000456246 GCP02774 474 aa25.27■■□□□ 1.64
MSH6-207ENST00000456246 BRWD3Q6RI45 1802 aa25.27■■□□□ 1.64
MSH6-207ENST00000456246 PUS7Q96PZ0 661 aaKnown RBP25.26■■□□□ 1.63
MSH6-207ENST00000456246 TTC21AQ8NDW8 1320 aa25.26■■□□□ 1.63
MSH6-207ENST00000456246 CPSF1Q10570 1443 aaKnown RBP25.26■■□□□ 1.63
MSH6-207ENST00000456246 SLIT3O75094 1523 aa25.26■■□□□ 1.63
MSH6-207ENST00000456246 NLRP6P59044 892 aa25.25■■□□□ 1.63
MSH6-207ENST00000456246 CHRNA2Q15822 529 aa25.25■■□□□ 1.63
MSH6-207ENST00000456246 TIMELESSQ9UNS1 1208 aa25.25■■□□□ 1.63
MSH6-207ENST00000456246 PIK3C2AO00443 1686 aa25.24■■□□□ 1.63
MSH6-207ENST00000456246 KTN1Q86UP2 1357 aaKnown RBP25.23■■□□□ 1.63
MSH6-207ENST00000456246 TTC21BQ7Z4L5 1316 aa25.23■■□□□ 1.63
MSH6-207ENST00000456246 A0A0G2JS52 829 aa25.23■■□□□ 1.63
MSH6-207ENST00000456246 MYT1Q01538 1121 aa25.23■■□□□ 1.63
MSH6-207ENST00000456246 FAM98CQ17RN3 349 aaKnown RBP25.23■■□□□ 1.63
MSH6-207ENST00000456246 LMO7Q8WWI1 1683 aa25.23■■□□□ 1.63
MSH6-207ENST00000456246 KRT27Q7Z3Y8 459 aa25.22■■□□□ 1.63
MSH6-207ENST00000456246 MON2Q7Z3U7 1717 aa25.22■■□□□ 1.63
MSH6-207ENST00000456246 SPATA31A1Q5TZJ5 1347 aa25.21■■□□□ 1.63
MSH6-207ENST00000456246 BLMP54132 1417 aaPredicted RBP25.2■■□□□ 1.63
MSH6-207ENST00000456246 EVA1CP58658 441 aa25.2■■□□□ 1.62
MSH6-207ENST00000456246 STRN4Q9NRL3 753 aa25.2■■□□□ 1.62
MSH6-207ENST00000456246 THSD7AQ9UPZ6 1657 aa25.2■■□□□ 1.62
MSH6-207ENST00000456246 CAMTA1Q9Y6Y1 1673 aa25.2■■□□□ 1.62
MSH6-207ENST00000456246 NINLQ9Y2I6 1382 aa25.18■■□□□ 1.62
MSH6-207ENST00000456246 KCNH5Q8NCM2 988 aa25.18■■□□□ 1.62
MSH6-207ENST00000456246 AATKQ6ZMQ8 1374 aa25.18■■□□□ 1.62
MSH6-207ENST00000456246 HDGFL2Q7Z4V5 671 aaPredicted RBP25.17■■□□□ 1.62
MSH6-207ENST00000456246 ST20-MTHFSA0A0A6YYL1 179 aa25.16■■□□□ 1.62
MSH6-207ENST00000456246 TMC1Q8TDI8 760 aa25.16■■□□□ 1.62
MSH6-207ENST00000456246 TESK2Q96S53 571 aa25.16■■□□□ 1.62
MSH6-207ENST00000456246 PCGF6Q9BYE7 350 aa25.16■■□□□ 1.62
MSH6-207ENST00000456246 TERF2IPQ9NYB0 399 aa25.15■■□□□ 1.62
MSH6-207ENST00000456246 COL5A2P05997 1499 aaPredicted RBP25.15■■□□□ 1.62
MSH6-207ENST00000456246 CD163L1Q9NR16 1453 aa25.15■■□□□ 1.62
MSH6-207ENST00000456246 SF3B2Q13435 895 aaKnown RBP25.14■■□□□ 1.62
MSH6-207ENST00000456246 BARGINQ6ZT62 677 aa25.14■■□□□ 1.62
MSH6-207ENST00000456246 THRAP3Q9Y2W1 955 aaKnown RBP25.13■■□□□ 1.61
MSH6-207ENST00000456246 USP47Q96K76 1375 aa25.13■■□□□ 1.61
MSH6-207ENST00000456246 EDC4Q6P2E9 1401 aaKnown RBP25.12■■□□□ 1.61
MSH6-207ENST00000456246 USP31Q70CQ4 1352 aa25.12■■□□□ 1.61
MSH6-207ENST00000456246 USP54Q70EL1 1684 aa25.12■■□□□ 1.61
MSH6-207ENST00000456246 LARP1Q6PKG0 1096 aaKnown RBP25.11■■□□□ 1.61
MSH6-207ENST00000456246 TCP11L2Q8N4U5 519 aa25.1■■□□□ 1.61
MSH6-207ENST00000456246 SLC12A5Q9H2X9 1139 aa25.1■■□□□ 1.61
MSH6-207ENST00000456246 ABCC6O95255 1503 aa25.1■■□□□ 1.61
MSH6-207ENST00000456246 CRB1P82279 1406 aa25.1■■□□□ 1.61
MSH6-207ENST00000456246 ZBTB7CA1YPR0 619 aa25.09■■□□□ 1.61
MSH6-207ENST00000456246 COL18A1P39060 1754 aa25.08■■□□□ 1.61
MSH6-207ENST00000456246 A0A1W2PP64 1363 aa25.08■■□□□ 1.61
MSH6-207ENST00000456246 NFAT5O94916 1531 aa25.08■■□□□ 1.61
MSH6-207ENST00000456246 TMF1P82094 1093 aa25.08■■□□□ 1.61
MSH6-207ENST00000456246 ARHGEF25Q86VW2 580 aa25.08■■□□□ 1.61
MSH6-207ENST00000456246 USP35Q9P2H5 1018 aa25.08■■□□□ 1.61
MSH6-207ENST00000456246 SUGP2Q8IX01 1082 aaKnown RBP eCLIP25.07■■□□□ 1.6
Retrieved 100 of 20,778 RNA–protein pairs in 12 ms