RNA–Protein interactions for RNA: ENST00000455732.5

USP39-208, Transcript of ubiquitin specific peptidase 39, humanhuman

TSL 3

Gene USP39, Length 623 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP39-208ENST00000455732 PLEKHG3A1L390 1219 aa24.65■■□□□ 1.54
USP39-208ENST00000455732 TRPC5Q9UL62 973 aaPredicted RBP24.65■■□□□ 1.54
USP39-208ENST00000455732 RGS12O14924 1447 aa24.64■■□□□ 1.54
USP39-208ENST00000455732 UPF1Q92900 1129 aaKnown RBP eCLIP24.64■■□□□ 1.54
USP39-208ENST00000455732 PLCH1Q4KWH8 1693 aa24.64■■□□□ 1.53
USP39-208ENST00000455732 SRPK2P78362 688 aaKnown RBP24.63■■□□□ 1.53
USP39-208ENST00000455732 NWD2Q9ULI1 1742 aa24.63■■□□□ 1.53
USP39-208ENST00000455732 ACEP12821 1306 aa24.62■■□□□ 1.53
USP39-208ENST00000455732 CCER1Q8TC90 406 aaPredicted RBP24.62■■□□□ 1.53
USP39-208ENST00000455732 CABP2Q9NPB3 220 aa24.62■■□□□ 1.53
USP39-208ENST00000455732 EVC2Q86UK5 1308 aa24.61■■□□□ 1.53
USP39-208ENST00000455732 HAP1P54257 671 aaPredicted RBP24.61■■□□□ 1.53
USP39-208ENST00000455732 PPIP5K1Q6PFW1 1433 aa24.61■■□□□ 1.53
USP39-208ENST00000455732 PLEKHG5O94827 1062 aa24.6■■□□□ 1.53
USP39-208ENST00000455732 PAK3O75914 559 aaPredicted RBP24.59■■□□□ 1.53
USP39-208ENST00000455732 UNC5CLQ8IV45 518 aa24.58■■□□□ 1.53
USP39-208ENST00000455732 PHRF1Q9P1Y6 1649 aaKnown RBP24.57■■□□□ 1.52
USP39-208ENST00000455732 COL14A1Q05707 1796 aaKnown RBP24.55■■□□□ 1.52
USP39-208ENST00000455732 NRAPQ86VF7 1730 aa24.55■■□□□ 1.52
USP39-208ENST00000455732 GLI3P10071 1580 aa24.54■■□□□ 1.52
USP39-208ENST00000455732 FAM83GA6ND36 823 aa24.54■■□□□ 1.52
USP39-208ENST00000455732 GJD4Q96KN9 370 aaPredicted RBP24.54■■□□□ 1.52
USP39-208ENST00000455732 CABP1Q9NZU7 370 aa24.53■■□□□ 1.52
USP39-208ENST00000455732 ATAD2Q6PL18 1390 aa24.53■■□□□ 1.52
USP39-208ENST00000455732 AKAP12Q02952 1782 aa24.52■■□□□ 1.52
USP39-208ENST00000455732 BRD4O60885 1362 aaPredicted RBP24.5■■□□□ 1.51
USP39-208ENST00000455732 USP6P35125 1406 aa24.5■■□□□ 1.51
USP39-208ENST00000455732 VPS72Q15906 364 aa24.48■■□□□ 1.51
USP39-208ENST00000455732 NUTM2GQ5VZR2 741 aa24.48■■□□□ 1.51
USP39-208ENST00000455732 USP47Q96K76 1375 aa24.48■■□□□ 1.51
USP39-208ENST00000455732 TESK2Q96S53 571 aa24.48■■□□□ 1.51
USP39-208ENST00000455732 NRKQ7Z2Y5 1582 aa24.47■■□□□ 1.51
USP39-208ENST00000455732 SSH2Q76I76 1423 aa24.47■■□□□ 1.51
USP39-208ENST00000455732 ABTB2Q8N961 1025 aa24.47■■□□□ 1.51
USP39-208ENST00000455732 ST20-MTHFSA0A0A6YYL1 179 aa24.46■■□□□ 1.51
USP39-208ENST00000455732 SLC24A1O60721 1099 aa24.46■■□□□ 1.51
USP39-208ENST00000455732 PUS7Q96PZ0 661 aaKnown RBP24.46■■□□□ 1.51
USP39-208ENST00000455732 BRWD3Q6RI45 1802 aa24.46■■□□□ 1.51
USP39-208ENST00000455732 USP19O94966 1318 aa24.45■■□□□ 1.5
USP39-208ENST00000455732 BTG4Q9NY30 223 aa24.45■■□□□ 1.5
USP39-208ENST00000455732 PIK3C2AO00443 1686 aa24.43■■□□□ 1.5
USP39-208ENST00000455732 KIAA0232Q92628 1395 aa24.43■■□□□ 1.5
USP39-208ENST00000455732 PRDM11Q9NQV5 511 aa24.43■■□□□ 1.5
USP39-208ENST00000455732 EP400Q96L91 3159 aa24.42■■□□□ 1.5
USP39-208ENST00000455732 MON2Q7Z3U7 1717 aa24.42■■□□□ 1.5
USP39-208ENST00000455732 CPSF1Q10570 1443 aaKnown RBP24.42■■□□□ 1.5
USP39-208ENST00000455732 NLRP13Q86W25 1043 aa24.41■■□□□ 1.5
USP39-208ENST00000455732 ZNF692Q9BU19 519 aaPredicted RBP24.4■■□□□ 1.5
USP39-208ENST00000455732 ONECUT3O60422 494 aaPredicted RBP24.39■■□□□ 1.49
USP39-208ENST00000455732 ZC3H6P61129 1189 aaKnown RBP24.39■■□□□ 1.49
USP39-208ENST00000455732 CPDO75976 1380 aa24.39■■□□□ 1.49
USP39-208ENST00000455732 LMO7Q8WWI1 1683 aa24.38■■□□□ 1.49
USP39-208ENST00000455732 CHRNA2Q15822 529 aa24.38■■□□□ 1.49
USP39-208ENST00000455732 CCDC9Q9Y3X0 531 aaKnown RBP24.38■■□□□ 1.49
USP39-208ENST00000455732 SLIT3O75094 1523 aa24.38■■□□□ 1.49
USP39-208ENST00000455732 CD163L1Q9NR16 1453 aa24.37■■□□□ 1.49
USP39-208ENST00000455732 GCP02774 474 aa24.36■■□□□ 1.49
USP39-208ENST00000455732 NINLQ9Y2I6 1382 aa24.36■■□□□ 1.49
USP39-208ENST00000455732 TTC21BQ7Z4L5 1316 aa24.35■■□□□ 1.49
USP39-208ENST00000455732 NLRP6P59044 892 aa24.35■■□□□ 1.49
USP39-208ENST00000455732 CAMTA1Q9Y6Y1 1673 aa24.34■■□□□ 1.49
USP39-208ENST00000455732 KTN1Q86UP2 1357 aaKnown RBP24.34■■□□□ 1.49
USP39-208ENST00000455732 SEPT12Q8IYM1 358 aa24.34■■□□□ 1.49
USP39-208ENST00000455732 SPATA31A5Q5VU36 1347 aa24.34■■□□□ 1.49
USP39-208ENST00000455732 SPATA31A7Q8IWB4 1347 aa24.34■■□□□ 1.49
USP39-208ENST00000455732 TMF1P82094 1093 aa24.33■■□□□ 1.49
USP39-208ENST00000455732 TTC21AQ8NDW8 1320 aa24.33■■□□□ 1.48
USP39-208ENST00000455732 USP54Q70EL1 1684 aa24.3■■□□□ 1.48
USP39-208ENST00000455732 THSD7AQ9UPZ6 1657 aa24.3■■□□□ 1.48
USP39-208ENST00000455732 COL18A1P39060 1754 aa24.3■■□□□ 1.48
USP39-208ENST00000455732 TMC1Q8TDI8 760 aa24.3■■□□□ 1.48
USP39-208ENST00000455732 SLC12A5Q9H2X9 1139 aa24.3■■□□□ 1.48
USP39-208ENST00000455732 FAM98CQ17RN3 349 aaKnown RBP24.29■■□□□ 1.48
USP39-208ENST00000455732 SRCAPQ6ZRS2 3230 aa24.28■■□□□ 1.48
USP39-208ENST00000455732 CDCA8Q53HL2 280 aa24.28■■□□□ 1.48
USP39-208ENST00000455732 HDGFL2Q7Z4V5 671 aaPredicted RBP24.28■■□□□ 1.48
USP39-208ENST00000455732 TERF2IPQ9NYB0 399 aa24.28■■□□□ 1.48
USP39-208ENST00000455732 SPATA31A1Q5TZJ5 1347 aa24.28■■□□□ 1.48
USP39-208ENST00000455732 A0A1W2PP64 1363 aa24.28■■□□□ 1.48
USP39-208ENST00000455732 STRN4Q9NRL3 753 aa24.27■■□□□ 1.48
USP39-208ENST00000455732 EDC4Q6P2E9 1401 aaKnown RBP24.27■■□□□ 1.48
USP39-208ENST00000455732 RGPD5Q99666 1765 aa24.26■■□□□ 1.47
USP39-208ENST00000455732 AATKQ6ZMQ8 1374 aa24.25■■□□□ 1.47
USP39-208ENST00000455732 COL5A2P05997 1499 aaPredicted RBP24.25■■□□□ 1.47
USP39-208ENST00000455732 NFAT5O94916 1531 aa24.25■■□□□ 1.47
USP39-208ENST00000455732 EIF4G2P78344 907 aaKnown RBP eCLIP24.24■■□□□ 1.47
USP39-208ENST00000455732 KRT27Q7Z3Y8 459 aa24.24■■□□□ 1.47
USP39-208ENST00000455732 USP31Q70CQ4 1352 aa24.24■■□□□ 1.47
USP39-208ENST00000455732 EVA1CP58658 441 aa24.23■■□□□ 1.47
USP39-208ENST00000455732 CCDC125Q86Z20 511 aa24.23■■□□□ 1.47
USP39-208ENST00000455732 ANKRD36BQ8N2N9 1353 aa24.23■■□□□ 1.47
USP39-208ENST00000455732 A0A0G2JS52 829 aa24.22■■□□□ 1.47
USP39-208ENST00000455732 MYT1Q01538 1121 aa24.22■■□□□ 1.47
USP39-208ENST00000455732 LARP1Q6PKG0 1096 aaKnown RBP24.22■■□□□ 1.47
USP39-208ENST00000455732 SUGP2Q8IX01 1082 aaKnown RBP eCLIP24.22■■□□□ 1.47
USP39-208ENST00000455732 KCNH5Q8NCM2 988 aa24.22■■□□□ 1.47
USP39-208ENST00000455732 ARHGEF25Q86VW2 580 aa24.21■■□□□ 1.47
USP39-208ENST00000455732 ZRANB1Q9UGI0 708 aa24.21■■□□□ 1.47
USP39-208ENST00000455732 NME9Q86XW9 330 aa24.2■■□□□ 1.46
USP39-208ENST00000455732 HSPA5P11021 654 aaKnown RBP24.19■■□□□ 1.46
Retrieved 100 of 20,778 RNA–protein pairs in 39.6 ms