RNA–Protein interactions for RNA: ENST00000454398.1

HLA-DPA3-207, Transcript of major histocompatibility complex, class II, DP alpha 3 (pseudogene), humanhuman

BASIC

Gene HLA-DPA3, Length 229 nt, Biotype unprocessed pseudogene.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HLA-DPA3-207ENST00000454398 TRAK1Q9UPV9 953 aa8.91□□□□□ -0.98
HLA-DPA3-207ENST00000454398 ITSN1Q15811 1721 aa8.91□□□□□ -0.98
HLA-DPA3-207ENST00000454398 NRKQ7Z2Y5 1582 aa8.9□□□□□ -0.98
HLA-DPA3-207ENST00000454398 PSME1Q06323 249 aa8.9□□□□□ -0.98
HLA-DPA3-207ENST00000454398 KRT27Q7Z3Y8 459 aa8.9□□□□□ -0.98
HLA-DPA3-207ENST00000454398 SIRT1Q96EB6 747 aa8.9□□□□□ -0.98
HLA-DPA3-207ENST00000454398 ACIN1Q9UKV3 1341 aaKnown RBP8.89□□□□□ -0.99
HLA-DPA3-207ENST00000454398 BTG4Q9NY30 223 aa8.89□□□□□ -0.99
HLA-DPA3-207ENST00000454398 KDM2AQ9Y2K7 1162 aa8.89□□□□□ -0.99
HLA-DPA3-207ENST00000454398 CHRNA2Q15822 529 aa8.88□□□□□ -0.99
HLA-DPA3-207ENST00000454398 NUTM2GQ5VZR2 741 aa8.88□□□□□ -0.99
HLA-DPA3-207ENST00000454398 GPRASP1Q5JY77 1395 aa8.87□□□□□ -0.99
HLA-DPA3-207ENST00000454398 KIAA0232Q92628 1395 aa8.87□□□□□ -0.99
HLA-DPA3-207ENST00000454398 PAK3O75914 559 aaPredicted RBP8.87□□□□□ -0.99
HLA-DPA3-207ENST00000454398 SF3B2Q13435 895 aaKnown RBP8.87□□□□□ -0.99
HLA-DPA3-207ENST00000454398 EN1Q05925 392 aaPredicted RBP8.86□□□□□ -0.99
HLA-DPA3-207ENST00000454398 CCDC125Q86Z20 511 aa8.86□□□□□ -0.99
HLA-DPA3-207ENST00000454398 PRDM11Q9NQV5 511 aa8.86□□□□□ -0.99
HLA-DPA3-207ENST00000454398 NUP188Q5SRE5 1749 aa8.85□□□□□ -0.99
HLA-DPA3-207ENST00000454398 SPATA31A5Q5VU36 1347 aa8.85□□□□□ -0.99
HLA-DPA3-207ENST00000454398 SPATA31A7Q8IWB4 1347 aa8.85□□□□□ -0.99
HLA-DPA3-207ENST00000454398 HRCP23327 699 aa8.85□□□□□ -0.99
HLA-DPA3-207ENST00000454398 R3HDM1Q15032 1099 aaKnown RBP8.85□□□□□ -0.99
HLA-DPA3-207ENST00000454398 NGDNQ8NEJ9 315 aaKnown RBP8.85□□□□□ -0.99
HLA-DPA3-207ENST00000454398 DCAF11Q8TEB1 546 aa8.85□□□□□ -0.99
HLA-DPA3-207ENST00000454398 STRN4Q9NRL3 753 aa8.85□□□□□ -0.99
HLA-DPA3-207ENST00000454398 USP35Q9P2H5 1018 aa8.85□□□□□ -0.99
HLA-DPA3-207ENST00000454398 LMO7Q8WWI1 1683 aa8.85□□□□□ -0.99
HLA-DPA3-207ENST00000454398 RREB1Q92766 1687 aa8.85□□□□□ -0.99
HLA-DPA3-207ENST00000454398 WASLO00401 505 aaPredicted RBP8.84□□□□□ -0.99
HLA-DPA3-207ENST00000454398 QRICH2Q9H0J4 1663 aa8.84□□□□□ -0.99
HLA-DPA3-207ENST00000454398 EIF3AQ14152 1382 aaKnown RBP8.84□□□□□ -0.99
HLA-DPA3-207ENST00000454398 SSH2Q76I76 1423 aa8.83□□□□□ -1
HLA-DPA3-207ENST00000454398 BAG6P46379 1132 aa8.83□□□□□ -1
HLA-DPA3-207ENST00000454398 ZC3H6P61129 1189 aaKnown RBP8.83□□□□□ -1
HLA-DPA3-207ENST00000454398 LRRC37A3O60309 1634 aa8.83□□□□□ -1
HLA-DPA3-207ENST00000454398 CAMTA1Q9Y6Y1 1673 aa8.82□□□□□ -1
HLA-DPA3-207ENST00000454398 DISP2A7MBM2 1401 aa8.82□□□□□ -1
HLA-DPA3-207ENST00000454398 TRIM37O94972 964 aa8.82□□□□□ -1
HLA-DPA3-207ENST00000454398 EZH2Q15910 746 aaKnown RBP8.82□□□□□ -1
HLA-DPA3-207ENST00000454398 SPATA31A1Q5TZJ5 1347 aa8.81□□□□□ -1
HLA-DPA3-207ENST00000454398 PTF1AQ7RTS3 328 aa8.81□□□□□ -1
HLA-DPA3-207ENST00000454398 NUDT16Q96DE0 195 aaKnown RBP8.81□□□□□ -1
HLA-DPA3-207ENST00000454398 CAMKK2Q96RR4 588 aa8.81□□□□□ -1
HLA-DPA3-207ENST00000454398 PIK3C2AO00443 1686 aa8.81□□□□□ -1
HLA-DPA3-207ENST00000454398 WNK3Q9BYP7 1800 aa8.8□□□□□ -1
HLA-DPA3-207ENST00000454398 ZBTB7CA1YPR0 619 aa8.8□□□□□ -1
HLA-DPA3-207ENST00000454398 NBPF1Q3BBV0 1214 aa8.8□□□□□ -1
HLA-DPA3-207ENST00000454398 LARP1Q6PKG0 1096 aaKnown RBP8.8□□□□□ -1
HLA-DPA3-207ENST00000454398 KIAA1210Q9ULL0 1709 aa8.8□□□□□ -1
HLA-DPA3-207ENST00000454398 ACEP12821 1306 aa8.8□□□□□ -1
HLA-DPA3-207ENST00000454398 COL5A2P05997 1499 aaPredicted RBP8.79□□□□□ -1
HLA-DPA3-207ENST00000454398 POLR3AO14802 1390 aaPredicted RBP8.79□□□□□ -1
HLA-DPA3-207ENST00000454398 CDK19Q9BWU1 502 aa8.79□□□□□ -1
HLA-DPA3-207ENST00000454398 PEAK1Q9H792 1746 aa8.79□□□□□ -1
HLA-DPA3-207ENST00000454398 PARP4Q9UKK3 1724 aaKnown RBP8.79□□□□□ -1
HLA-DPA3-207ENST00000454398 PPIP5K1Q6PFW1 1433 aa8.79□□□□□ -1
HLA-DPA3-207ENST00000454398 USP19O94966 1318 aa8.79□□□□□ -1
HLA-DPA3-207ENST00000454398 UTRNP46939 3433 aa8.78□□□□□ -1
HLA-DPA3-207ENST00000454398 CABP2Q9NPB3 220 aa8.77□□□□□ -1.01
HLA-DPA3-207ENST00000454398 RGPD5Q99666 1765 aa8.76□□□□□ -1.01
HLA-DPA3-207ENST00000454398 SLIT3O75094 1523 aa8.76□□□□□ -1.01
HLA-DPA3-207ENST00000454398 APBA3O96018 575 aa8.76□□□□□ -1.01
HLA-DPA3-207ENST00000454398 NBPF8Q3BBV2 869 aa8.76□□□□□ -1.01
HLA-DPA3-207ENST00000454398 ABTB2Q8N961 1025 aa8.76□□□□□ -1.01
HLA-DPA3-207ENST00000454398 PDGFDQ9GZP0 370 aaPredicted RBP8.76□□□□□ -1.01
HLA-DPA3-207ENST00000454398 COL18A1P39060 1754 aa8.76□□□□□ -1.01
HLA-DPA3-207ENST00000454398 SBF2Q86WG5 1849 aa8.75□□□□□ -1.01
HLA-DPA3-207ENST00000454398 USP6P35125 1406 aa8.75□□□□□ -1.01
HLA-DPA3-207ENST00000454398 SOX12O15370 315 aa8.75□□□□□ -1.01
HLA-DPA3-207ENST00000454398 SRPK2P78362 688 aaKnown RBP8.75□□□□□ -1.01
HLA-DPA3-207ENST00000454398 ANO8Q9HCE9 1232 aaPredicted RBP8.75□□□□□ -1.01
HLA-DPA3-207ENST00000454398 AKAP12Q02952 1782 aa8.75□□□□□ -1.01
HLA-DPA3-207ENST00000454398 TRPM1Q7Z4N2 1603 aa8.75□□□□□ -1.01
HLA-DPA3-207ENST00000454398 MYOM1P52179 1685 aa8.75□□□□□ -1.01
HLA-DPA3-207ENST00000454398 CPDO75976 1380 aa8.74□□□□□ -1.01
HLA-DPA3-207ENST00000454398 CASZ1Q86V15 1759 aa8.74□□□□□ -1.01
HLA-DPA3-207ENST00000454398 PLEKHG3A1L390 1219 aa8.74□□□□□ -1.01
HLA-DPA3-207ENST00000454398 EVA1CP58658 441 aa8.74□□□□□ -1.01
HLA-DPA3-207ENST00000454398 FAM196AQ6ZSG2 479 aa8.74□□□□□ -1.01
HLA-DPA3-207ENST00000454398 OVOS2A0A0G2JMS6 1433 aa8.73□□□□□ -1.01
HLA-DPA3-207ENST00000454398 OVOS2A0A0J9YW53 1432 aa8.73□□□□□ -1.01
HLA-DPA3-207ENST00000454398 CRB1P82279 1406 aa8.73□□□□□ -1.01
HLA-DPA3-207ENST00000454398 OVOS2Q6IE36 1432 aa8.73□□□□□ -1.01
HLA-DPA3-207ENST00000454398 PDE3BQ13370 1112 aa8.73□□□□□ -1.01
HLA-DPA3-207ENST00000454398 BARGINQ6ZT62 677 aa8.73□□□□□ -1.01
HLA-DPA3-207ENST00000454398 TCP11L2Q8N4U5 519 aa8.73□□□□□ -1.01
HLA-DPA3-207ENST00000454398 AXIN2Q9Y2T1 843 aa8.73□□□□□ -1.01
HLA-DPA3-207ENST00000454398 CCDC61Q9Y6R9 512 aa8.73□□□□□ -1.01
HLA-DPA3-207ENST00000454398 CENPJQ9HC77 1338 aaPredicted RBP8.73□□□□□ -1.01
HLA-DPA3-207ENST00000454398 RGPD3A6NKT7 1758 aaPredicted RBP8.73□□□□□ -1.01
HLA-DPA3-207ENST00000454398 RGPD4Q7Z3J3 1758 aa8.73□□□□□ -1.01
HLA-DPA3-207ENST00000454398 CPSF1Q10570 1443 aaKnown RBP8.72□□□□□ -1.01
HLA-DPA3-207ENST00000454398 GCP02774 474 aa8.72□□□□□ -1.01
HLA-DPA3-207ENST00000454398 PROM2Q8N271 834 aa8.72□□□□□ -1.01
HLA-DPA3-207ENST00000454398 PARD3Q8TEW0 1356 aa8.72□□□□□ -1.01
HLA-DPA3-207ENST00000454398 NFAT5O94916 1531 aa8.71□□□□□ -1.01
HLA-DPA3-207ENST00000454398 MON2Q7Z3U7 1717 aa8.71□□□□□ -1.02
HLA-DPA3-207ENST00000454398 CABP1Q9NZU7 370 aa8.7□□□□□ -1.02
HLA-DPA3-207ENST00000454398 LTN1O94822 1766 aa8.69□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 57.2 ms