RNA–Protein interactions for RNA: ENST00000454018.6

SYNE1-214, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 1 (best)

Gene SYNE1, Length 1,546 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-214ENST00000454018 CADPS2Q86UW7 1296 aa12.29□□□□□ -0.44
SYNE1-214ENST00000454018 AKAP12Q02952 1782 aa12.29□□□□□ -0.44
SYNE1-214ENST00000454018 ATF3P18847 181 aa12.28□□□□□ -0.44
SYNE1-214ENST00000454018 NHSL1Q5SYE7 1610 aa12.28□□□□□ -0.44
SYNE1-214ENST00000454018 EVC2Q86UK5 1308 aa12.28□□□□□ -0.44
SYNE1-214ENST00000454018 HSPA5P11021 654 aaKnown RBP12.27□□□□□ -0.44
SYNE1-214ENST00000454018 TESK2Q96S53 571 aa12.27□□□□□ -0.44
SYNE1-214ENST00000454018 HIRIP3Q9BW71 556 aaPredicted RBP12.27□□□□□ -0.44
SYNE1-214ENST00000454018 WASLO00401 505 aaPredicted RBP12.27□□□□□ -0.45
SYNE1-214ENST00000454018 C1orf167Q5SNV9 1468 aa12.26□□□□□ -0.45
SYNE1-214ENST00000454018 MON2Q7Z3U7 1717 aa12.25□□□□□ -0.45
SYNE1-214ENST00000454018 ATAD2Q6PL18 1390 aa12.25□□□□□ -0.45
SYNE1-214ENST00000454018 DISP3Q9P2K9 1392 aa12.25□□□□□ -0.45
SYNE1-214ENST00000454018 DSG3P32926 999 aa12.25□□□□□ -0.45
SYNE1-214ENST00000454018 TMF1P82094 1093 aa12.25□□□□□ -0.45
SYNE1-214ENST00000454018 TOM1O60784 492 aa12.24□□□□□ -0.45
SYNE1-214ENST00000454018 PHLPP1O60346 1717 aa12.24□□□□□ -0.45
SYNE1-214ENST00000454018 AHDC1Q5TGY3 1603 aaPredicted RBP12.23□□□□□ -0.45
SYNE1-214ENST00000454018 GSE1Q14687 1217 aa12.23□□□□□ -0.45
SYNE1-214ENST00000454018 ARXQ96QS3 562 aa12.23□□□□□ -0.45
SYNE1-214ENST00000454018 CDK19Q9BWU1 502 aa12.23□□□□□ -0.45
SYNE1-214ENST00000454018 SRPK2P78362 688 aaKnown RBP12.22□□□□□ -0.45
SYNE1-214ENST00000454018 TMEM132AQ24JP5 1023 aa12.22□□□□□ -0.45
SYNE1-214ENST00000454018 CDCA8Q53HL2 280 aa12.22□□□□□ -0.45
SYNE1-214ENST00000454018 PUS7Q96PZ0 661 aaKnown RBP12.22□□□□□ -0.45
SYNE1-214ENST00000454018 NINLQ9Y2I6 1382 aa12.22□□□□□ -0.45
SYNE1-214ENST00000454018 NRKQ7Z2Y5 1582 aa12.22□□□□□ -0.45
SYNE1-214ENST00000454018 UBAP1LF5GYI3 381 aa12.21□□□□□ -0.45
SYNE1-214ENST00000454018 RIOK3O14730 519 aaKnown RBP12.21□□□□□ -0.45
SYNE1-214ENST00000454018 TRPM3Q9HCF6 1732 aaPredicted RBP12.21□□□□□ -0.45
SYNE1-214ENST00000454018 PPIP5K1Q6PFW1 1433 aa12.21□□□□□ -0.46
SYNE1-214ENST00000454018 SLAIN2Q9P270 581 aa12.21□□□□□ -0.46
SYNE1-214ENST00000454018 PRR36Q9H6K5 1346 aa12.2□□□□□ -0.46
SYNE1-214ENST00000454018 ERICH6Q7L0X2 663 aa12.2□□□□□ -0.46
SYNE1-214ENST00000454018 CABP2Q9NPB3 220 aa12.2□□□□□ -0.46
SYNE1-214ENST00000454018 KIF20BQ96Q89 1820 aa12.19□□□□□ -0.46
SYNE1-214ENST00000454018 NUTM2FA1L443 756 aa12.19□□□□□ -0.46
SYNE1-214ENST00000454018 NUDT16Q96DE0 195 aaKnown RBP12.19□□□□□ -0.46
SYNE1-214ENST00000454018 COL16A1Q07092 1604 aaPredicted RBP12.19□□□□□ -0.46
SYNE1-214ENST00000454018 NUBP1P53384 320 aa12.18□□□□□ -0.46
SYNE1-214ENST00000454018 CCDC61Q9Y6R9 512 aa12.18□□□□□ -0.46
SYNE1-214ENST00000454018 POLR3AO14802 1390 aaPredicted RBP12.18□□□□□ -0.46
SYNE1-214ENST00000454018 ALS2Q96Q42 1657 aa12.17□□□□□ -0.46
SYNE1-214ENST00000454018 ESCO1Q5FWF5 840 aa12.17□□□□□ -0.46
SYNE1-214ENST00000454018 BRINP3Q76B58 766 aa12.17□□□□□ -0.46
SYNE1-214ENST00000454018 STK25O00506 426 aa12.16□□□□□ -0.46
SYNE1-214ENST00000454018 PHF8Q9UPP1 1060 aa12.16□□□□□ -0.46
SYNE1-214ENST00000454018 PXDNQ92626 1479 aa12.16□□□□□ -0.46
SYNE1-214ENST00000454018 ORAI2Q96SN7 254 aa12.16□□□□□ -0.46
SYNE1-214ENST00000454018 KIF7Q2M1P5 1343 aa12.16□□□□□ -0.46
SYNE1-214ENST00000454018 CCDC7Q96M83 1385 aa12.16□□□□□ -0.46
SYNE1-214ENST00000454018 CD163L1Q9NR16 1453 aa12.16□□□□□ -0.46
SYNE1-214ENST00000454018 SHPRHQ149N8 1683 aa12.16□□□□□ -0.46
SYNE1-214ENST00000454018 USP54Q70EL1 1684 aa12.16□□□□□ -0.46
SYNE1-214ENST00000454018 ANKRD26Q9UPS8 1709 aa12.16□□□□□ -0.46
SYNE1-214ENST00000454018 CPSF1Q10570 1443 aaKnown RBP12.15□□□□□ -0.46
SYNE1-214ENST00000454018 NPHP3Q7Z494 1330 aa12.15□□□□□ -0.46
SYNE1-214ENST00000454018 PIP4K2BP78356 416 aa12.15□□□□□ -0.46
SYNE1-214ENST00000454018 ABCA3Q99758 1704 aa12.14□□□□□ -0.47
SYNE1-214ENST00000454018 ANKRD36BQ8N2N9 1353 aa12.14□□□□□ -0.47
SYNE1-214ENST00000454018 PLEKHG3A1L390 1219 aa12.14□□□□□ -0.47
SYNE1-214ENST00000454018 DCAF8Q5TAQ9 597 aa12.14□□□□□ -0.47
SYNE1-214ENST00000454018 CRYBG1Q9Y4K1 1723 aa12.14□□□□□ -0.47
SYNE1-214ENST00000454018 PIK3C2AO00443 1686 aa12.14□□□□□ -0.47
SYNE1-214ENST00000454018 COL22A1Q8NFW1 1626 aaPredicted RBP12.14□□□□□ -0.47
SYNE1-214ENST00000454018 USP6P35125 1406 aa12.13□□□□□ -0.47
SYNE1-214ENST00000454018 A0A1W2PP64 1363 aa12.13□□□□□ -0.47
SYNE1-214ENST00000454018 BRD4O60885 1362 aaPredicted RBP12.13□□□□□ -0.47
SYNE1-214ENST00000454018 WASHC2AQ641Q2 1341 aa12.13□□□□□ -0.47
SYNE1-214ENST00000454018 C11orf95C9JLR9 678 aaPredicted RBP12.13□□□□□ -0.47
SYNE1-214ENST00000454018 DAXXQ9UER7 740 aaPredicted RBP12.13□□□□□ -0.47
SYNE1-214ENST00000454018 MARF1Q9Y4F3 1742 aaKnown RBP12.13□□□□□ -0.47
SYNE1-214ENST00000454018 ACEP12821 1306 aa12.12□□□□□ -0.47
SYNE1-214ENST00000454018 NGDNQ8NEJ9 315 aaKnown RBP12.12□□□□□ -0.47
SYNE1-214ENST00000454018 PMFBP1Q8TBY8 1022 aa12.12□□□□□ -0.47
SYNE1-214ENST00000454018 TMC1Q8TDI8 760 aa12.12□□□□□ -0.47
SYNE1-214ENST00000454018 FBXO41Q8TF61 875 aa12.12□□□□□ -0.47
SYNE1-214ENST00000454018 CABP1Q9NZU7 370 aa12.12□□□□□ -0.47
SYNE1-214ENST00000454018 MED1Q15648 1581 aaPredicted RBP12.12□□□□□ -0.47
SYNE1-214ENST00000454018 POLR3GLQ9BT43 218 aa12.11□□□□□ -0.47
SYNE1-214ENST00000454018 TERF2IPQ9NYB0 399 aa12.11□□□□□ -0.47
SYNE1-214ENST00000454018 TNS3Q68CZ2 1445 aa12.11□□□□□ -0.47
SYNE1-214ENST00000454018 EDC4Q6P2E9 1401 aaKnown RBP12.11□□□□□ -0.47
SYNE1-214ENST00000454018 FOXO3O43524 673 aa12.11□□□□□ -0.47
SYNE1-214ENST00000454018 PHRF1Q9P1Y6 1649 aaKnown RBP12.1□□□□□ -0.47
SYNE1-214ENST00000454018 SBNO1A3KN83 1393 aa12.1□□□□□ -0.47
SYNE1-214ENST00000454018 KTN1Q86UP2 1357 aaKnown RBP12.1□□□□□ -0.47
SYNE1-214ENST00000454018 SOS2Q07890 1332 aaPredicted RBP12.1□□□□□ -0.47
SYNE1-214ENST00000454018 HDGFL2Q7Z4V5 671 aaPredicted RBP12.1□□□□□ -0.47
SYNE1-214ENST00000454018 SLC12A5Q9H2X9 1139 aa12.1□□□□□ -0.47
SYNE1-214ENST00000454018 SSH2Q76I76 1423 aa12.09□□□□□ -0.47
SYNE1-214ENST00000454018 PSME1Q06323 249 aa12.08□□□□□ -0.48
SYNE1-214ENST00000454018 DDX17Q92841 729 aaKnown RBP12.07□□□□□ -0.48
SYNE1-214ENST00000454018 ARHGEF10O15013 1369 aa12.07□□□□□ -0.48
SYNE1-214ENST00000454018 TTC21AQ8NDW8 1320 aa12.07□□□□□ -0.48
SYNE1-214ENST00000454018 NSD3Q9BZ95 1437 aa12.07□□□□□ -0.48
SYNE1-214ENST00000454018 ZNF316A6NFI3 1004 aaPredicted RBP12.06□□□□□ -0.48
SYNE1-214ENST00000454018 KRT28Q7Z3Y7 464 aa12.06□□□□□ -0.48
SYNE1-214ENST00000454018 LTN1O94822 1766 aa12.06□□□□□ -0.48
SYNE1-214ENST00000454018 XPCQ01831 940 aaPredicted RBP12.06□□□□□ -0.48
Retrieved 100 of 20,778 RNA–protein pairs in 42 ms