RNA–Protein interactions for RNA: ENST00000453441.1

COL28A1-205, Transcript of collagen type XXVIII alpha 1 chain, humanhuman

TSL 2

Gene COL28A1, Length 700 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL28A1-205ENST00000453441 TRPC6Q9Y210 931 aa12.34□□□□□ -0.43
COL28A1-205ENST00000453441 CDC42BPGQ6DT37 1551 aa12.34□□□□□ -0.43
COL28A1-205ENST00000453441 SLC24A1O60721 1099 aa12.33□□□□□ -0.44
COL28A1-205ENST00000453441 PRAM1Q96QH2 718 aa12.33□□□□□ -0.44
COL28A1-205ENST00000453441 TRAK1Q9UPV9 953 aa12.33□□□□□ -0.44
COL28A1-205ENST00000453441 ADGRB2O60241 1585 aa12.33□□□□□ -0.44
COL28A1-205ENST00000453441 NALCNQ8IZF0 1738 aa12.33□□□□□ -0.44
COL28A1-205ENST00000453441 SIPA1L2Q9P2F8 1722 aaPredicted RBP12.32□□□□□ -0.44
COL28A1-205ENST00000453441 ATF3P18847 181 aa12.32□□□□□ -0.44
COL28A1-205ENST00000453441 CENPJQ9HC77 1338 aaPredicted RBP12.31□□□□□ -0.44
COL28A1-205ENST00000453441 SBNO2Q9Y2G9 1366 aa12.3□□□□□ -0.44
COL28A1-205ENST00000453441 TTLL13PA6NNM8 815 aa12.3□□□□□ -0.44
COL28A1-205ENST00000453441 WAPLQ7Z5K2 1190 aa12.3□□□□□ -0.44
COL28A1-205ENST00000453441 PLEKHH1Q9ULM0 1364 aa12.3□□□□□ -0.44
COL28A1-205ENST00000453441 UBAP1LF5GYI3 381 aa12.29□□□□□ -0.44
COL28A1-205ENST00000453441 ZEB1P37275 1124 aaPredicted RBP12.29□□□□□ -0.44
COL28A1-205ENST00000453441 ATN1P54259 1190 aaPredicted RBP12.29□□□□□ -0.44
COL28A1-205ENST00000453441 FBXO41Q8TF61 875 aa12.29□□□□□ -0.44
COL28A1-205ENST00000453441 QRICH2Q9H0J4 1663 aa12.29□□□□□ -0.44
COL28A1-205ENST00000453441 RBM33Q96EV2 1170 aaKnown RBP12.28□□□□□ -0.44
COL28A1-205ENST00000453441 TMEM106CQ9BVX2 250 aa12.28□□□□□ -0.44
COL28A1-205ENST00000453441 ECM2O94769 699 aaPredicted RBP12.27□□□□□ -0.45
COL28A1-205ENST00000453441 PDAP1Q13442 181 aaKnown RBP12.27□□□□□ -0.45
COL28A1-205ENST00000453441 SLC39A7Q92504 469 aa12.27□□□□□ -0.45
COL28A1-205ENST00000453441 FMN2Q9NZ56 1722 aa12.27□□□□□ -0.45
COL28A1-205ENST00000453441 MST1RQ04912 1400 aa12.27□□□□□ -0.45
COL28A1-205ENST00000453441 ANKARQ7Z5J8 1434 aa12.27□□□□□ -0.45
COL28A1-205ENST00000453441 PELP1Q8IZL8 1130 aaKnown RBP12.26□□□□□ -0.45
COL28A1-205ENST00000453441 SLAIN2Q9P270 581 aa12.26□□□□□ -0.45
COL28A1-205ENST00000453441 USP47Q96K76 1375 aa12.26□□□□□ -0.45
COL28A1-205ENST00000453441 C7P10643 843 aa12.25□□□□□ -0.45
COL28A1-205ENST00000453441 PSEN1P49768 467 aa12.25□□□□□ -0.45
COL28A1-205ENST00000453441 WASLO00401 505 aaPredicted RBP12.24□□□□□ -0.45
COL28A1-205ENST00000453441 RIOK3O14730 519 aaKnown RBP12.24□□□□□ -0.45
COL28A1-205ENST00000453441 SAFB2Q14151 953 aaKnown RBP eCLIP12.24□□□□□ -0.45
COL28A1-205ENST00000453441 C1orf167Q5SNV9 1468 aa12.24□□□□□ -0.45
COL28A1-205ENST00000453441 EVC2Q86UK5 1308 aa12.24□□□□□ -0.45
COL28A1-205ENST00000453441 MINK1Q8N4C8 1332 aaPredicted RBP12.24□□□□□ -0.45
COL28A1-205ENST00000453441 TULP4Q9NRJ4 1543 aa12.24□□□□□ -0.45
COL28A1-205ENST00000453441 EIF4G2P78344 907 aaKnown RBP eCLIP12.23□□□□□ -0.45
COL28A1-205ENST00000453441 PUS7Q96PZ0 661 aaKnown RBP12.23□□□□□ -0.45
COL28A1-205ENST00000453441 TAOK2Q9UL54 1235 aa12.23□□□□□ -0.45
COL28A1-205ENST00000453441 ITSN1Q15811 1721 aa12.23□□□□□ -0.45
COL28A1-205ENST00000453441 KIF1AQ12756 1690 aa12.22□□□□□ -0.45
COL28A1-205ENST00000453441 TRIM35Q9UPQ4 493 aa12.22□□□□□ -0.45
COL28A1-205ENST00000453441 ROBO1Q9Y6N7 1651 aa12.22□□□□□ -0.45
COL28A1-205ENST00000453441 CDCA8Q53HL2 280 aa12.21□□□□□ -0.45
COL28A1-205ENST00000453441 RNF25Q96BH1 459 aaPredicted RBP12.21□□□□□ -0.45
COL28A1-205ENST00000453441 ST20-MTHFSA0A0A6YYL1 179 aa12.2□□□□□ -0.46
COL28A1-205ENST00000453441 IER5LQ5T953 404 aa12.2□□□□□ -0.46
COL28A1-205ENST00000453441 HIRIP3Q9BW71 556 aaPredicted RBP12.2□□□□□ -0.46
COL28A1-205ENST00000453441 CDK19Q9BWU1 502 aa12.2□□□□□ -0.46
COL28A1-205ENST00000453441 ATAD2Q6PL18 1390 aa12.19□□□□□ -0.46
COL28A1-205ENST00000453441 AHDC1Q5TGY3 1603 aaPredicted RBP12.19□□□□□ -0.46
COL28A1-205ENST00000453441 PIP4K2BP78356 416 aa12.19□□□□□ -0.46
COL28A1-205ENST00000453441 SRPK2P78362 688 aaKnown RBP12.19□□□□□ -0.46
COL28A1-205ENST00000453441 TMF1P82094 1093 aa12.19□□□□□ -0.46
COL28A1-205ENST00000453441 BRINP3Q76B58 766 aa12.19□□□□□ -0.46
COL28A1-205ENST00000453441 TESK2Q96S53 571 aa12.19□□□□□ -0.46
COL28A1-205ENST00000453441 ATP7BP35670 1465 aa12.19□□□□□ -0.46
COL28A1-205ENST00000453441 USP32Q8NFA0 1604 aa12.19□□□□□ -0.46
COL28A1-205ENST00000453441 NUDT16Q96DE0 195 aaKnown RBP12.18□□□□□ -0.46
COL28A1-205ENST00000453441 METRNQ9UJH8 293 aa12.18□□□□□ -0.46
COL28A1-205ENST00000453441 NHSL1Q5SYE7 1610 aa12.18□□□□□ -0.46
COL28A1-205ENST00000453441 NINLQ9Y2I6 1382 aa12.18□□□□□ -0.46
COL28A1-205ENST00000453441 NPHP3Q7Z494 1330 aa12.17□□□□□ -0.46
COL28A1-205ENST00000453441 TOPAZ1Q8N9V7 1692 aa12.17□□□□□ -0.46
COL28A1-205ENST00000453441 ESCO1Q5FWF5 840 aa12.17□□□□□ -0.46
COL28A1-205ENST00000453441 RGPD8O14715 1765 aaPredicted RBP12.16□□□□□ -0.46
COL28A1-205ENST00000453441 PHF8Q9UPP1 1060 aa12.16□□□□□ -0.46
COL28A1-205ENST00000453441 PRR36Q9H6K5 1346 aa12.15□□□□□ -0.46
COL28A1-205ENST00000453441 PLEKHG3A1L390 1219 aa12.15□□□□□ -0.46
COL28A1-205ENST00000453441 HSPA5P11021 654 aaKnown RBP12.15□□□□□ -0.46
COL28A1-205ENST00000453441 BRD4O60885 1362 aaPredicted RBP12.15□□□□□ -0.46
COL28A1-205ENST00000453441 PHLPP1O60346 1717 aa12.14□□□□□ -0.47
COL28A1-205ENST00000453441 GOLGA2Q08379 1002 aa12.14□□□□□ -0.47
COL28A1-205ENST00000453441 ORAI2Q96SN7 254 aa12.14□□□□□ -0.47
COL28A1-205ENST00000453441 CABP2Q9NPB3 220 aa12.14□□□□□ -0.47
COL28A1-205ENST00000453441 PPIP5K1Q6PFW1 1433 aa12.13□□□□□ -0.47
COL28A1-205ENST00000453441 NUTM2FA1L443 756 aa12.13□□□□□ -0.47
COL28A1-205ENST00000453441 RGL2O15211 777 aa12.13□□□□□ -0.47
COL28A1-205ENST00000453441 PSME1Q06323 249 aa12.13□□□□□ -0.47
COL28A1-205ENST00000453441 POLR3AO14802 1390 aaPredicted RBP12.13□□□□□ -0.47
COL28A1-205ENST00000453441 SOS2Q07890 1332 aaPredicted RBP12.12□□□□□ -0.47
COL28A1-205ENST00000453441 COL16A1Q07092 1604 aaPredicted RBP12.12□□□□□ -0.47
COL28A1-205ENST00000453441 LHX8Q68G74 356 aa12.12□□□□□ -0.47
COL28A1-205ENST00000453441 PXDNQ92626 1479 aa12.11□□□□□ -0.47
COL28A1-205ENST00000453441 SBNO1A3KN83 1393 aa12.11□□□□□ -0.47
COL28A1-205ENST00000453441 DISP3Q9P2K9 1392 aa12.11□□□□□ -0.47
COL28A1-205ENST00000453441 HSPA1LP34931 641 aa12.11□□□□□ -0.47
COL28A1-205ENST00000453441 NGDNQ8NEJ9 315 aaKnown RBP12.11□□□□□ -0.47
COL28A1-205ENST00000453441 LRRC59Q96AG4 307 aaKnown RBP12.11□□□□□ -0.47
COL28A1-205ENST00000453441 JCADQ9P266 1359 aa12.1□□□□□ -0.47
COL28A1-205ENST00000453441 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP12.1□□□□□ -0.47
COL28A1-205ENST00000453441 FOXO3O43524 673 aa12.1□□□□□ -0.47
COL28A1-205ENST00000453441 SEC24BO95487 1268 aa12.1□□□□□ -0.47
COL28A1-205ENST00000453441 MKRN3Q13064 507 aaKnown RBP12.1□□□□□ -0.47
COL28A1-205ENST00000453441 ILDR1Q86SU0 546 aaPredicted RBP12.1□□□□□ -0.47
COL28A1-205ENST00000453441 ZFP91Q96JP5 570 aaPredicted RBP12.1□□□□□ -0.47
COL28A1-205ENST00000453441 KRT28Q7Z3Y7 464 aa12.09□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 15.9 ms