RNA–Protein interactions for RNA: ENST00000448428.1

PRPF40A-203, Transcript of pre-mRNA processing factor 40 homolog A, humanhuman

TSL 5

Gene PRPF40A, Length 490 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40A-203ENST00000448428 CABP1Q9NZU7 370 aa18.09■□□□□ 0.49
PRPF40A-203ENST00000448428 BCL9LQ86UU0 1499 aa18.08■□□□□ 0.49
PRPF40A-203ENST00000448428 RBM6P78332 1123 aaKnown RBP18.08■□□□□ 0.48
PRPF40A-203ENST00000448428 TRPC5Q9UL62 973 aaPredicted RBP18.07■□□□□ 0.48
PRPF40A-203ENST00000448428 TIMELESSQ9UNS1 1208 aa18.06■□□□□ 0.48
PRPF40A-203ENST00000448428 CRYBG1Q9Y4K1 1723 aa18.06■□□□□ 0.48
PRPF40A-203ENST00000448428 SBNO2Q9Y2G9 1366 aa18.05■□□□□ 0.48
PRPF40A-203ENST00000448428 SLIT2O94813 1529 aa18.05■□□□□ 0.48
PRPF40A-203ENST00000448428 FAM83GA6ND36 823 aa18.05■□□□□ 0.48
PRPF40A-203ENST00000448428 NUTM2GQ5VZR2 741 aa18.05■□□□□ 0.48
PRPF40A-203ENST00000448428 ATRNO75882 1429 aa18.05■□□□□ 0.48
PRPF40A-203ENST00000448428 CDK12Q9NYV4 1490 aaPredicted RBP18.04■□□□□ 0.48
PRPF40A-203ENST00000448428 UNC5CLQ8IV45 518 aa18.04■□□□□ 0.48
PRPF40A-203ENST00000448428 CCER1Q8TC90 406 aaPredicted RBP18.04■□□□□ 0.48
PRPF40A-203ENST00000448428 ABTB2Q8N961 1025 aa18.03■□□□□ 0.48
PRPF40A-203ENST00000448428 ST20-MTHFSA0A0A6YYL1 179 aa18.02■□□□□ 0.48
PRPF40A-203ENST00000448428 TNKS1BP1Q9C0C2 1729 aaKnown RBP18.02■□□□□ 0.48
PRPF40A-203ENST00000448428 PLCH1Q4KWH8 1693 aa18.02■□□□□ 0.47
PRPF40A-203ENST00000448428 NWD2Q9ULI1 1742 aa18.01■□□□□ 0.47
PRPF40A-203ENST00000448428 USP6P35125 1406 aa18■□□□□ 0.47
PRPF40A-203ENST00000448428 GJD4Q96KN9 370 aaPredicted RBP18■□□□□ 0.47
PRPF40A-203ENST00000448428 TESK2Q96S53 571 aa18■□□□□ 0.47
PRPF40A-203ENST00000448428 ATAD2Q6PL18 1390 aa18■□□□□ 0.47
PRPF40A-203ENST00000448428 AKAP12Q02952 1782 aa17.99■□□□□ 0.47
PRPF40A-203ENST00000448428 RGS12O14924 1447 aa17.99■□□□□ 0.47
PRPF40A-203ENST00000448428 ZNF692Q9BU19 519 aaPredicted RBP17.99■□□□□ 0.47
PRPF40A-203ENST00000448428 BRD4O60885 1362 aaPredicted RBP17.99■□□□□ 0.47
PRPF40A-203ENST00000448428 PHRF1Q9P1Y6 1649 aaKnown RBP17.98■□□□□ 0.47
PRPF40A-203ENST00000448428 COL14A1Q05707 1796 aaKnown RBP17.98■□□□□ 0.47
PRPF40A-203ENST00000448428 SSH2Q76I76 1423 aa17.98■□□□□ 0.47
PRPF40A-203ENST00000448428 NLRP13Q86W25 1043 aa17.97■□□□□ 0.47
PRPF40A-203ENST00000448428 BTG4Q9NY30 223 aa17.97■□□□□ 0.47
PRPF40A-203ENST00000448428 CPSF1Q10570 1443 aaKnown RBP17.97■□□□□ 0.47
PRPF40A-203ENST00000448428 ZC3H6P61129 1189 aaKnown RBP17.96■□□□□ 0.47
PRPF40A-203ENST00000448428 VPS72Q15906 364 aa17.96■□□□□ 0.47
PRPF40A-203ENST00000448428 PRDM11Q9NQV5 511 aa17.96■□□□□ 0.47
PRPF40A-203ENST00000448428 KIAA0232Q92628 1395 aa17.95■□□□□ 0.46
PRPF40A-203ENST00000448428 USP47Q96K76 1375 aa17.95■□□□□ 0.46
PRPF40A-203ENST00000448428 TMC1Q8TDI8 760 aa17.95■□□□□ 0.46
PRPF40A-203ENST00000448428 PUS7Q96PZ0 661 aaKnown RBP17.95■□□□□ 0.46
PRPF40A-203ENST00000448428 SLC12A5Q9H2X9 1139 aa17.95■□□□□ 0.46
PRPF40A-203ENST00000448428 GLI3P10071 1580 aa17.95■□□□□ 0.46
PRPF40A-203ENST00000448428 USP19O94966 1318 aa17.95■□□□□ 0.46
PRPF40A-203ENST00000448428 TTC21BQ7Z4L5 1316 aa17.95■□□□□ 0.46
PRPF40A-203ENST00000448428 NRAPQ86VF7 1730 aa17.95■□□□□ 0.46
PRPF40A-203ENST00000448428 NLRP6P59044 892 aa17.94■□□□□ 0.46
PRPF40A-203ENST00000448428 CHRNA2Q15822 529 aa17.94■□□□□ 0.46
PRPF40A-203ENST00000448428 KTN1Q86UP2 1357 aaKnown RBP17.93■□□□□ 0.46
PRPF40A-203ENST00000448428 SLC24A1O60721 1099 aa17.93■□□□□ 0.46
PRPF40A-203ENST00000448428 GCP02774 474 aa17.93■□□□□ 0.46
PRPF40A-203ENST00000448428 CCDC9Q9Y3X0 531 aaKnown RBP17.93■□□□□ 0.46
PRPF40A-203ENST00000448428 PIK3C2AO00443 1686 aa17.93■□□□□ 0.46
PRPF40A-203ENST00000448428 NRKQ7Z2Y5 1582 aa17.92■□□□□ 0.46
PRPF40A-203ENST00000448428 UPF1Q92900 1129 aaKnown RBP eCLIP17.92■□□□□ 0.46
PRPF40A-203ENST00000448428 CD163L1Q9NR16 1453 aa17.92■□□□□ 0.46
PRPF40A-203ENST00000448428 MON2Q7Z3U7 1717 aa17.92■□□□□ 0.46
PRPF40A-203ENST00000448428 TTC21AQ8NDW8 1320 aa17.9■□□□□ 0.46
PRPF40A-203ENST00000448428 ONECUT3O60422 494 aaPredicted RBP17.89■□□□□ 0.45
PRPF40A-203ENST00000448428 HDGFL2Q7Z4V5 671 aaPredicted RBP17.89■□□□□ 0.45
PRPF40A-203ENST00000448428 CPDO75976 1380 aa17.89■□□□□ 0.45
PRPF40A-203ENST00000448428 TMF1P82094 1093 aa17.88■□□□□ 0.45
PRPF40A-203ENST00000448428 SUGP2Q8IX01 1082 aaKnown RBP eCLIP17.88■□□□□ 0.45
PRPF40A-203ENST00000448428 TERF2IPQ9NYB0 399 aa17.88■□□□□ 0.45
PRPF40A-203ENST00000448428 BRWD3Q6RI45 1802 aa17.88■□□□□ 0.45
PRPF40A-203ENST00000448428 SLIT3O75094 1523 aa17.88■□□□□ 0.45
PRPF40A-203ENST00000448428 SEPT12Q8IYM1 358 aa17.87■□□□□ 0.45
PRPF40A-203ENST00000448428 CAMTA1Q9Y6Y1 1673 aa17.87■□□□□ 0.45
PRPF40A-203ENST00000448428 STRN4Q9NRL3 753 aa17.86■□□□□ 0.45
PRPF40A-203ENST00000448428 ZRANB1Q9UGI0 708 aa17.86■□□□□ 0.45
PRPF40A-203ENST00000448428 SPATA31A5Q5VU36 1347 aa17.86■□□□□ 0.45
PRPF40A-203ENST00000448428 SPATA31A7Q8IWB4 1347 aa17.86■□□□□ 0.45
PRPF40A-203ENST00000448428 A0A1W2PP64 1363 aa17.86■□□□□ 0.45
PRPF40A-203ENST00000448428 EVA1CP58658 441 aa17.85■□□□□ 0.45
PRPF40A-203ENST00000448428 LMO7Q8WWI1 1683 aa17.85■□□□□ 0.45
PRPF40A-203ENST00000448428 NINLQ9Y2I6 1382 aa17.84■□□□□ 0.45
PRPF40A-203ENST00000448428 ZBTB7CA1YPR0 619 aa17.84■□□□□ 0.45
PRPF40A-203ENST00000448428 FAM98CQ17RN3 349 aaKnown RBP17.84■□□□□ 0.45
PRPF40A-203ENST00000448428 NME9Q86XW9 330 aa17.84■□□□□ 0.45
PRPF40A-203ENST00000448428 EDC4Q6P2E9 1401 aaKnown RBP17.83■□□□□ 0.45
PRPF40A-203ENST00000448428 SOX12O15370 315 aa17.83■□□□□ 0.44
PRPF40A-203ENST00000448428 KCNH5Q8NCM2 988 aa17.83■□□□□ 0.44
PRPF40A-203ENST00000448428 USP31Q70CQ4 1352 aa17.82■□□□□ 0.44
PRPF40A-203ENST00000448428 COL18A1P39060 1754 aa17.82■□□□□ 0.44
PRPF40A-203ENST00000448428 SPATA31A1Q5TZJ5 1347 aa17.82■□□□□ 0.44
PRPF40A-203ENST00000448428 ARHGEF25Q86VW2 580 aa17.82■□□□□ 0.44
PRPF40A-203ENST00000448428 AATKQ6ZMQ8 1374 aa17.81■□□□□ 0.44
PRPF40A-203ENST00000448428 CDCA8Q53HL2 280 aa17.81■□□□□ 0.44
PRPF40A-203ENST00000448428 LARP1Q6PKG0 1096 aaKnown RBP17.81■□□□□ 0.44
PRPF40A-203ENST00000448428 RGPD5Q99666 1765 aa17.81■□□□□ 0.44
PRPF40A-203ENST00000448428 USP54Q70EL1 1684 aa17.8■□□□□ 0.44
PRPF40A-203ENST00000448428 A0A0G2JS52 829 aa17.8■□□□□ 0.44
PRPF40A-203ENST00000448428 MYT1Q01538 1121 aa17.8■□□□□ 0.44
PRPF40A-203ENST00000448428 AXIN2Q9Y2T1 843 aa17.8■□□□□ 0.44
PRPF40A-203ENST00000448428 EIF4G2P78344 907 aaKnown RBP eCLIP17.79■□□□□ 0.44
PRPF40A-203ENST00000448428 KRT27Q7Z3Y8 459 aa17.79■□□□□ 0.44
PRPF40A-203ENST00000448428 USP35Q9P2H5 1018 aa17.79■□□□□ 0.44
PRPF40A-203ENST00000448428 ANKRD36BQ8N2N9 1353 aa17.79■□□□□ 0.44
PRPF40A-203ENST00000448428 NFAT5O94916 1531 aa17.78■□□□□ 0.44
PRPF40A-203ENST00000448428 COL5A2P05997 1499 aaPredicted RBP17.78■□□□□ 0.44
PRPF40A-203ENST00000448428 HSPA5P11021 654 aaKnown RBP17.78■□□□□ 0.44
Retrieved 100 of 20,778 RNA–protein pairs in 41.9 ms