RNA–Protein interactions for RNA: ENST00000448238.2

NIPBL-202, Transcript of NIPBL, cohesin loading factor, humanhuman

TSL 1 (best) BASIC

Gene NIPBL, Length 8,729 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NIPBL-202ENST00000448238 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP10.55□□□□□ -0.72
NIPBL-202ENST00000448238 CCDC160A6NGH7 325 aa10.55□□□□□ -0.72
NIPBL-202ENST00000448238 IFFO1Q0D2I5 559 aa10.55□□□□□ -0.72
NIPBL-202ENST00000448238 INTS3Q68E01 1043 aaKnown RBP10.55□□□□□ -0.72
NIPBL-202ENST00000448238 DYNC1I1O14576 645 aa10.54□□□□□ -0.72
NIPBL-202ENST00000448238 PPFIA2O75334 1257 aa10.54□□□□□ -0.72
NIPBL-202ENST00000448238 CEP135Q66GS9 1140 aa10.54□□□□□ -0.72
NIPBL-202ENST00000448238 PRKCSHP14314 528 aaPredicted RBP10.54□□□□□ -0.72
NIPBL-202ENST00000448238 FERMT1Q9BQL6 677 aa10.54□□□□□ -0.72
NIPBL-202ENST00000448238 USH1CQ9Y6N9 552 aa10.54□□□□□ -0.72
NIPBL-202ENST00000448238 GSTTP1A0A1W2PQM5 241 aa10.54□□□□□ -0.72
NIPBL-202ENST00000448238 ERC2O15083 957 aa10.54□□□□□ -0.72
NIPBL-202ENST00000448238 FBXW7Q969H0 707 aa10.54□□□□□ -0.72
NIPBL-202ENST00000448238 CCDC192P0DO97 292 aa10.54□□□□□ -0.72
NIPBL-202ENST00000448238 DHX37Q8IY37 1157 aaKnown RBP10.54□□□□□ -0.72
NIPBL-202ENST00000448238 SLC3A2P08195 630 aaKnown RBP10.54□□□□□ -0.72
NIPBL-202ENST00000448238 TSPY26PQ9H489 355 aa10.54□□□□□ -0.72
NIPBL-202ENST00000448238 SSX2IPQ9Y2D8 614 aa10.54□□□□□ -0.72
NIPBL-202ENST00000448238 BRPF1P55201 1214 aaPredicted RBP10.54□□□□□ -0.72
NIPBL-202ENST00000448238 PDIA4P13667 645 aaKnown RBP10.54□□□□□ -0.72
NIPBL-202ENST00000448238 HMGB3O15347 200 aaKnown RBP10.53□□□□□ -0.72
NIPBL-202ENST00000448238 OPA1O60313 960 aa10.53□□□□□ -0.72
NIPBL-202ENST00000448238 CTR9Q6PD62 1173 aa10.53□□□□□ -0.72
NIPBL-202ENST00000448238 MIPOL1Q8TD10 442 aa10.53□□□□□ -0.72
NIPBL-202ENST00000448238 FSD2A1L4K1 749 aa10.53□□□□□ -0.72
NIPBL-202ENST00000448238 STMN1P16949 149 aa10.53□□□□□ -0.72
NIPBL-202ENST00000448238 TSNARE1Q96NA8 513 aa10.53□□□□□ -0.72
NIPBL-202ENST00000448238 SMC6Q96SB8 1091 aa10.53□□□□□ -0.72
NIPBL-202ENST00000448238 IFIT2P09913 472 aaKnown RBP10.53□□□□□ -0.72
NIPBL-202ENST00000448238 GTF2A1P52655 376 aaPredicted RBP10.53□□□□□ -0.72
NIPBL-202ENST00000448238 ZNF526Q8TF50 670 aaPredicted RBP10.53□□□□□ -0.72
NIPBL-202ENST00000448238 ANAPC4Q9UJX5 808 aa10.53□□□□□ -0.72
NIPBL-202ENST00000448238 PPP1R12BO60237 982 aaPredicted RBP10.53□□□□□ -0.72
NIPBL-202ENST00000448238 DNAJC21Q5F1R6 531 aaKnown RBP10.53□□□□□ -0.72
NIPBL-202ENST00000448238 DNAJC2Q99543 621 aaKnown RBP10.53□□□□□ -0.72
NIPBL-202ENST00000448238 PAK3O75914 559 aaPredicted RBP10.53□□□□□ -0.72
NIPBL-202ENST00000448238 HSPA4P34932 840 aa10.53□□□□□ -0.72
NIPBL-202ENST00000448238 PUS7Q96PZ0 661 aaKnown RBP10.53□□□□□ -0.72
NIPBL-202ENST00000448238 COMMD10Q9Y6G5 202 aa10.53□□□□□ -0.72
NIPBL-202ENST00000448238 UBE4AQ14139 1066 aa10.53□□□□□ -0.72
NIPBL-202ENST00000448238 VPS36Q86VN1 386 aa10.53□□□□□ -0.72
NIPBL-202ENST00000448238 CCDC113Q9H0I3 377 aa10.52□□□□□ -0.72
NIPBL-202ENST00000448238 C9orf78Q9NZ63 289 aaPredicted RBP10.52□□□□□ -0.72
NIPBL-202ENST00000448238 NINLQ9Y2I6 1382 aa10.52□□□□□ -0.73
NIPBL-202ENST00000448238 EEA1Q15075 1411 aa10.52□□□□□ -0.73
NIPBL-202ENST00000448238 RBM25P49756 843 aaKnown RBP10.52□□□□□ -0.73
NIPBL-202ENST00000448238 IRX3P78415 501 aaPredicted RBP10.52□□□□□ -0.73
NIPBL-202ENST00000448238 BMP2KQ9NSY1 1161 aaPredicted RBP10.52□□□□□ -0.73
NIPBL-202ENST00000448238 FANCIQ9NVI1 1328 aa10.52□□□□□ -0.73
NIPBL-202ENST00000448238 ZBTB17Q13105 803 aa10.52□□□□□ -0.73
NIPBL-202ENST00000448238 TACC1O75410 805 aa10.51□□□□□ -0.73
NIPBL-202ENST00000448238 CCDC9Q9Y3X0 531 aaKnown RBP10.51□□□□□ -0.73
NIPBL-202ENST00000448238 RNF187Q5TA31 235 aaPredicted RBP10.51□□□□□ -0.73
NIPBL-202ENST00000448238 RNF168Q8IYW5 571 aaPredicted RBP10.51□□□□□ -0.73
NIPBL-202ENST00000448238 NAA15Q9BXJ9 866 aaKnown RBP10.51□□□□□ -0.73
NIPBL-202ENST00000448238 TERF2IPQ9NYB0 399 aa10.51□□□□□ -0.73
NIPBL-202ENST00000448238 SEPT8Q92599 483 aa10.51□□□□□ -0.73
NIPBL-202ENST00000448238 MAP4K4O95819 1239 aaPredicted RBP10.51□□□□□ -0.73
NIPBL-202ENST00000448238 CCDC110Q8TBZ0 833 aa10.51□□□□□ -0.73
NIPBL-202ENST00000448238 IKQ13123 557 aaPredicted RBP10.51□□□□□ -0.73
NIPBL-202ENST00000448238 SPECC1Q5M775 1068 aa10.51□□□□□ -0.73
NIPBL-202ENST00000448238 ANKS4BQ8N8V4 417 aa10.51□□□□□ -0.73
NIPBL-202ENST00000448238 POTEB2H3BUK9 544 aa10.5□□□□□ -0.73
NIPBL-202ENST00000448238 ARHGAP29Q52LW3 1261 aa10.5□□□□□ -0.73
NIPBL-202ENST00000448238 LRRC45Q96CN5 670 aa10.5□□□□□ -0.73
NIPBL-202ENST00000448238 MAP3K9P80192 1104 aa10.5□□□□□ -0.73
NIPBL-202ENST00000448238 CCDC83Q8IWF9 413 aa10.5□□□□□ -0.73
NIPBL-202ENST00000448238 UQCRHLA0A096LP55 91 aa10.5□□□□□ -0.73
NIPBL-202ENST00000448238 DCAF8L1A6NGE4 600 aa10.5□□□□□ -0.73
NIPBL-202ENST00000448238 DDX58O95786 925 aaKnown RBP10.5□□□□□ -0.73
NIPBL-202ENST00000448238 UQCRHP07919 91 aa10.5□□□□□ -0.73
NIPBL-202ENST00000448238 RPUSD2Q8IZ73 545 aaKnown RBP10.5□□□□□ -0.73
NIPBL-202ENST00000448238 ZMAT2Q96NC0 199 aaKnown RBP10.5□□□□□ -0.73
NIPBL-202ENST00000448238 AAMPQ13685 434 aa10.5□□□□□ -0.73
NIPBL-202ENST00000448238 GBP7Q8N8V2 638 aaPredicted RBP10.49□□□□□ -0.73
NIPBL-202ENST00000448238 CEP120Q8N960 986 aa10.49□□□□□ -0.73
NIPBL-202ENST00000448238 CFDP1Q9UEE9 299 aaPredicted RBP10.49□□□□□ -0.73
NIPBL-202ENST00000448238 IVLP07476 585 aa10.49□□□□□ -0.73
NIPBL-202ENST00000448238 SH2D4BQ5SQS7 431 aa10.49□□□□□ -0.73
NIPBL-202ENST00000448238 KIF5CO60282 957 aa10.49□□□□□ -0.73
NIPBL-202ENST00000448238 TANGO6Q9C0B7 1094 aa10.49□□□□□ -0.73
NIPBL-202ENST00000448238 PDE4AP27815 886 aa10.49□□□□□ -0.73
NIPBL-202ENST00000448238 MAPK8IP2Q13387 824 aaPredicted RBP10.49□□□□□ -0.73
NIPBL-202ENST00000448238 DZIP1Q86YF9 867 aaKnown RBP10.49□□□□□ -0.73
NIPBL-202ENST00000448238 IKBKGQ9Y6K9 419 aa10.49□□□□□ -0.73
NIPBL-202ENST00000448238 BCL11BQ9C0K0 894 aaPredicted RBP10.48□□□□□ -0.73
NIPBL-202ENST00000448238 NSRP1Q9H0G5 558 aaKnown RBP10.48□□□□□ -0.73
NIPBL-202ENST00000448238 KIF4AO95239 1232 aa10.48□□□□□ -0.73
NIPBL-202ENST00000448238 SH3BGRP55822 239 aaPredicted RBP10.48□□□□□ -0.73
NIPBL-202ENST00000448238 CEP112Q8N8E3 955 aa10.48□□□□□ -0.73
NIPBL-202ENST00000448238 MAP7D1Q3KQU3 841 aa10.48□□□□□ -0.73
NIPBL-202ENST00000448238 ZSCAN12O43309 604 aa10.48□□□□□ -0.73
NIPBL-202ENST00000448238 RBM28Q9NW13 759 aaKnown RBP10.48□□□□□ -0.73
NIPBL-202ENST00000448238 TDO2P48775 406 aa10.47□□□□□ -0.73
NIPBL-202ENST00000448238 G3BP1Q13283 466 aaKnown RBP eCLIP10.47□□□□□ -0.73
NIPBL-202ENST00000448238 KIF18AQ8NI77 898 aa10.47□□□□□ -0.73
NIPBL-202ENST00000448238 STIM2Q9P246 746 aa10.47□□□□□ -0.73
NIPBL-202ENST00000448238 MGEA5O60502 916 aa10.47□□□□□ -0.73
NIPBL-202ENST00000448238 RFC1P35251 1148 aaPredicted RBP10.47□□□□□ -0.73
NIPBL-202ENST00000448238 FILIP1Q7Z7B0 1213 aa10.47□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 83.5 ms