RNA–Protein interactions for RNA: ENST00000448223.6

SMC6-207, Transcript of structural maintenance of chromosomes 6, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SMC6, Length 5,233 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMC6-207ENST00000448223 LNPKQ9C0E8 428 aa11.15□□□□□ -0.62
SMC6-207ENST00000448223 ARHGAP5Q13017 1502 aa11.15□□□□□ -0.62
SMC6-207ENST00000448223 MINK1Q8N4C8 1332 aaPredicted RBP11.15□□□□□ -0.62
SMC6-207ENST00000448223 PLCD3Q8N3E9 789 aa11.15□□□□□ -0.62
SMC6-207ENST00000448223 DNAJC2Q99543 621 aaKnown RBP11.15□□□□□ -0.62
SMC6-207ENST00000448223 PDZRN3Q9UPQ7 1066 aa11.15□□□□□ -0.62
SMC6-207ENST00000448223 FOXD4L6Q3SYB3 417 aaPredicted RBP11.15□□□□□ -0.62
SMC6-207ENST00000448223 FOXD4L3Q6VB84 417 aaPredicted RBP11.15□□□□□ -0.62
SMC6-207ENST00000448223 ARHGEF12Q9NZN5 1544 aa11.15□□□□□ -0.62
SMC6-207ENST00000448223 SF3A1Q15459 793 aaKnown RBP11.15□□□□□ -0.63
SMC6-207ENST00000448223 CGNL1Q0VF96 1302 aa11.15□□□□□ -0.63
SMC6-207ENST00000448223 PLEKHH1Q9ULM0 1364 aa11.15□□□□□ -0.63
SMC6-207ENST00000448223 SEC24BO95487 1268 aa11.14□□□□□ -0.63
SMC6-207ENST00000448223 TNNT1P13805 278 aa11.14□□□□□ -0.63
SMC6-207ENST00000448223 IPO7O95373 1038 aaKnown RBP11.14□□□□□ -0.63
SMC6-207ENST00000448223 CCDC141Q6ZP82 1450 aa11.14□□□□□ -0.63
SMC6-207ENST00000448223 SKIDA1Q1XH10 827 aa11.14□□□□□ -0.63
SMC6-207ENST00000448223 SYNJ2O15056 1496 aa11.14□□□□□ -0.63
SMC6-207ENST00000448223 INCENPQ9NQS7 918 aa11.13□□□□□ -0.63
SMC6-207ENST00000448223 POLR1AO95602 1720 aaPredicted RBP11.13□□□□□ -0.63
SMC6-207ENST00000448223 FAM135AQ9P2D6 1515 aa11.13□□□□□ -0.63
SMC6-207ENST00000448223 ATP10BO94823 1461 aa11.13□□□□□ -0.63
SMC6-207ENST00000448223 NUCB2P80303 420 aa11.13□□□□□ -0.63
SMC6-207ENST00000448223 C1orf115Q9H7X2 142 aa11.13□□□□□ -0.63
SMC6-207ENST00000448223 GTF2A1P52655 376 aaPredicted RBP11.12□□□□□ -0.63
SMC6-207ENST00000448223 AXDND1Q5T1B0 1012 aaPredicted RBP11.12□□□□□ -0.63
SMC6-207ENST00000448223 RNF214Q8ND24 703 aa11.12□□□□□ -0.63
SMC6-207ENST00000448223 PLEKHH2Q8IVE3 1493 aa11.12□□□□□ -0.63
SMC6-207ENST00000448223 CCDC112Q8NEF3 446 aa11.12□□□□□ -0.63
SMC6-207ENST00000448223 TRERF1Q96PN7 1200 aa11.12□□□□□ -0.63
SMC6-207ENST00000448223 NPHP1O15259 732 aa11.12□□□□□ -0.63
SMC6-207ENST00000448223 WWC1Q8IX03 1113 aa11.12□□□□□ -0.63
SMC6-207ENST00000448223 GRPEL1Q9HAV7 217 aa11.12□□□□□ -0.63
SMC6-207ENST00000448223 EIF3AQ14152 1382 aaKnown RBP11.12□□□□□ -0.63
SMC6-207ENST00000448223 PES1O00541 588 aaKnown RBP11.12□□□□□ -0.63
SMC6-207ENST00000448223 C8orf34Q49A92 452 aa11.12□□□□□ -0.63
SMC6-207ENST00000448223 GOLGA6L7A0A1B0GV03 622 aa11.12□□□□□ -0.63
SMC6-207ENST00000448223 HMOX1P09601 288 aa11.12□□□□□ -0.63
SMC6-207ENST00000448223 ANKRD45Q5TZF3 282 aa11.12□□□□□ -0.63
SMC6-207ENST00000448223 MCTP1Q6DN14 999 aa11.12□□□□□ -0.63
SMC6-207ENST00000448223 ZKSCAN2Q63HK3 967 aa11.11□□□□□ -0.63
SMC6-207ENST00000448223 EXOSC9Q06265 439 aaKnown RBP11.11□□□□□ -0.63
SMC6-207ENST00000448223 FBLN1P23142 703 aa11.11□□□□□ -0.63
SMC6-207ENST00000448223 DZIP1LQ8IYY4 767 aaKnown RBP11.11□□□□□ -0.63
SMC6-207ENST00000448223 RUNDC1Q96C34 613 aa11.11□□□□□ -0.63
SMC6-207ENST00000448223 TIGD1Q96MW7 591 aa11.11□□□□□ -0.63
SMC6-207ENST00000448223 ADGRF5Q8IZF2 1346 aa11.1□□□□□ -0.63
SMC6-207ENST00000448223 C14orf37Q86TY3 774 aa11.1□□□□□ -0.63
SMC6-207ENST00000448223 ZSCAN30Q86W11 494 aa11.1□□□□□ -0.63
SMC6-207ENST00000448223 SSR1P43307 286 aaKnown RBP11.1□□□□□ -0.63
SMC6-207ENST00000448223 COL17A1Q9UMD9 1497 aaPredicted RBP11.1□□□□□ -0.63
SMC6-207ENST00000448223 CT47B1P0C2W7 299 aaPredicted RBP11.1□□□□□ -0.63
SMC6-207ENST00000448223 RIPK4P57078 832 aa11.1□□□□□ -0.63
SMC6-207ENST00000448223 CENPHQ9H3R5 247 aa11.09□□□□□ -0.63
SMC6-207ENST00000448223 A2MP01023 1474 aa11.09□□□□□ -0.63
SMC6-207ENST00000448223 ZRSR2Q15696 482 aaKnown RBP11.09□□□□□ -0.63
SMC6-207ENST00000448223 KDM2BQ8NHM5 1336 aa11.09□□□□□ -0.63
SMC6-207ENST00000448223 EIF3JO75822 258 aaKnown RBP11.08□□□□□ -0.64
SMC6-207ENST00000448223 GORABQ5T7V8 394 aa11.08□□□□□ -0.64
SMC6-207ENST00000448223 BLMP54132 1417 aaPredicted RBP11.08□□□□□ -0.64
SMC6-207ENST00000448223 SASS6Q6UVJ0 657 aa11.08□□□□□ -0.64
SMC6-207ENST00000448223 C22orf23Q9BZE7 217 aa11.08□□□□□ -0.64
SMC6-207ENST00000448223 ESF1Q9H501 851 aaKnown RBP11.08□□□□□ -0.64
SMC6-207ENST00000448223 THUMPD2Q9BTF0 503 aaKnown RBP11.08□□□□□ -0.64
SMC6-207ENST00000448223 SHANK2Q9UPX8 1470 aa11.08□□□□□ -0.64
SMC6-207ENST00000448223 TRIM6-TRIM34B2RNG4 842 aa11.08□□□□□ -0.64
SMC6-207ENST00000448223 RLBP1P12271 317 aa11.08□□□□□ -0.64
SMC6-207ENST00000448223 NEXNQ0ZGT2 675 aa11.08□□□□□ -0.64
SMC6-207ENST00000448223 PCDHB15Q9Y5E8 787 aa11.08□□□□□ -0.64
SMC6-207ENST00000448223 CAVIN1Q6NZI2 390 aaKnown RBP11.07□□□□□ -0.64
SMC6-207ENST00000448223 H3BQV1 296 aa11.07□□□□□ -0.64
SMC6-207ENST00000448223 LETM1O95202 739 aaPredicted RBP11.07□□□□□ -0.64
SMC6-207ENST00000448223 IFFO2Q5TF58 517 aa11.07□□□□□ -0.64
SMC6-207ENST00000448223 ZMYM4Q5VZL5 1548 aa11.07□□□□□ -0.64
SMC6-207ENST00000448223 EIF4G3O43432 1585 aaKnown RBP11.07□□□□□ -0.64
SMC6-207ENST00000448223 RASSF8Q8NHQ8 419 aa11.06□□□□□ -0.64
SMC6-207ENST00000448223 SYCP2Q9BX26 1530 aa11.06□□□□□ -0.64
SMC6-207ENST00000448223 CARD14Q9BXL6 1004 aa11.06□□□□□ -0.64
SMC6-207ENST00000448223 SCAPERQ9BY12 1400 aa11.06□□□□□ -0.64
SMC6-207ENST00000448223 CHMP3Q9Y3E7 222 aa11.05□□□□□ -0.64
SMC6-207ENST00000448223 CCP110O43303 1012 aa11.05□□□□□ -0.64
SMC6-207ENST00000448223 RARSP54136 660 aaKnown RBP11.05□□□□□ -0.64
SMC6-207ENST00000448223 NKTRP30414 1462 aaKnown RBP11.05□□□□□ -0.64
SMC6-207ENST00000448223 SLC4A10Q6U841 1118 aa11.05□□□□□ -0.64
SMC6-207ENST00000448223 TICAM2Q86XR7 235 aa11.05□□□□□ -0.64
SMC6-207ENST00000448223 TRIM5Q9C035 493 aa11.05□□□□□ -0.64
SMC6-207ENST00000448223 SLTMQ9NWH9 1034 aaKnown RBP eCLIP11.05□□□□□ -0.64
SMC6-207ENST00000448223 CEP170Q5SW79 1584 aa11.05□□□□□ -0.64
SMC6-207ENST00000448223 TSPY26PQ9H489 355 aa11.05□□□□□ -0.64
SMC6-207ENST00000448223 NOB1Q9ULX3 412 aaKnown RBP11.05□□□□□ -0.64
SMC6-207ENST00000448223 MBD3O95983 291 aa11.04□□□□□ -0.64
SMC6-207ENST00000448223 BICD2Q8TD16 824 aa11.04□□□□□ -0.64
SMC6-207ENST00000448223 ERLIN1O75477 346 aa11.04□□□□□ -0.64
SMC6-207ENST00000448223 PDE3AQ14432 1141 aa11.04□□□□□ -0.64
SMC6-207ENST00000448223 TDO2P48775 406 aa11.04□□□□□ -0.64
SMC6-207ENST00000448223 CT47A1Q5JQC4 288 aaPredicted RBP11.04□□□□□ -0.64
SMC6-207ENST00000448223 PRM3Q9NNZ6 103 aa11.04□□□□□ -0.64
SMC6-207ENST00000448223 DHX37Q8IY37 1157 aaKnown RBP11.04□□□□□ -0.64
SMC6-207ENST00000448223 ANKRD20A12PQ8NF67 263 aa11.03□□□□□ -0.64
SMC6-207ENST00000448223 ABCC10Q5T3U5 1492 aa11.03□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 12.4 ms