RNA–Protein interactions for RNA: ENST00000447216.2

TRAPPC4-203, Transcript of trafficking protein particle complex 4, humanhuman

TSL 2

Gene TRAPPC4, Length 980 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAPPC4-203ENST00000447216 SSH2Q76I76 1423 aa24.73■■□□□ 1.55
TRAPPC4-203ENST00000447216 SUGP2Q8IX01 1082 aaKnown RBP eCLIP24.73■■□□□ 1.55
TRAPPC4-203ENST00000447216 PHF23Q9BUL5 403 aaPredicted RBP24.73■■□□□ 1.55
TRAPPC4-203ENST00000447216 TTC21BQ7Z4L5 1316 aa24.72■■□□□ 1.55
TRAPPC4-203ENST00000447216 PAK3O75914 559 aaPredicted RBP24.72■■□□□ 1.55
TRAPPC4-203ENST00000447216 ALS2Q96Q42 1657 aa24.71■■□□□ 1.55
TRAPPC4-203ENST00000447216 SOS2Q07890 1332 aaPredicted RBP24.7■■□□□ 1.54
TRAPPC4-203ENST00000447216 PIK3C2AO00443 1686 aa24.7■■□□□ 1.54
TRAPPC4-203ENST00000447216 PER1O15534 1290 aaPredicted RBP24.7■■□□□ 1.54
TRAPPC4-203ENST00000447216 COL16A1Q07092 1604 aaPredicted RBP24.69■■□□□ 1.54
TRAPPC4-203ENST00000447216 KNSTRNQ9Y448 316 aa24.69■■□□□ 1.54
TRAPPC4-203ENST00000447216 CNGB1Q14028 1251 aaPredicted RBP24.67■■□□□ 1.54
TRAPPC4-203ENST00000447216 NME9Q86XW9 330 aa24.67■■□□□ 1.54
TRAPPC4-203ENST00000447216 SBNO1A3KN83 1393 aa24.67■■□□□ 1.54
TRAPPC4-203ENST00000447216 BRD4O60885 1362 aaPredicted RBP24.67■■□□□ 1.54
TRAPPC4-203ENST00000447216 LMOD2Q6P5Q4 547 aa24.66■■□□□ 1.54
TRAPPC4-203ENST00000447216 ZRANB1Q9UGI0 708 aa24.66■■□□□ 1.54
TRAPPC4-203ENST00000447216 ANKRD26Q9UPS8 1709 aa24.66■■□□□ 1.54
TRAPPC4-203ENST00000447216 MARF1Q9Y4F3 1742 aaKnown RBP24.66■■□□□ 1.54
TRAPPC4-203ENST00000447216 TTC21AQ8NDW8 1320 aa24.65■■□□□ 1.54
TRAPPC4-203ENST00000447216 NUTM2GQ5VZR2 741 aa24.65■■□□□ 1.54
TRAPPC4-203ENST00000447216 TNS3Q68CZ2 1445 aa24.65■■□□□ 1.54
TRAPPC4-203ENST00000447216 CGNL1Q0VF96 1302 aa24.64■■□□□ 1.54
TRAPPC4-203ENST00000447216 SPATA31A3Q5VYP0 1347 aa24.64■■□□□ 1.54
TRAPPC4-203ENST00000447216 FYB1O15117 783 aa24.63■■□□□ 1.53
TRAPPC4-203ENST00000447216 AMER1Q5JTC6 1135 aaPredicted RBP24.63■■□□□ 1.53
TRAPPC4-203ENST00000447216 GGNBP2Q9H3C7 697 aa24.63■■□□□ 1.53
TRAPPC4-203ENST00000447216 ABTB2Q8N961 1025 aa24.62■■□□□ 1.53
TRAPPC4-203ENST00000447216 PLEKHG5O94827 1062 aa24.61■■□□□ 1.53
TRAPPC4-203ENST00000447216 HSPA1LP34931 641 aa24.61■■□□□ 1.53
TRAPPC4-203ENST00000447216 CC2D1BQ5T0F9 858 aaKnown RBP24.61■■□□□ 1.53
TRAPPC4-203ENST00000447216 USP54Q70EL1 1684 aa24.6■■□□□ 1.53
TRAPPC4-203ENST00000447216 NLRP6P59044 892 aa24.59■■□□□ 1.53
TRAPPC4-203ENST00000447216 FBXO41Q8TF61 875 aa24.58■■□□□ 1.53
TRAPPC4-203ENST00000447216 LRRC59Q96AG4 307 aaKnown RBP24.58■■□□□ 1.53
TRAPPC4-203ENST00000447216 CRYBG1Q9Y4K1 1723 aa24.58■■□□□ 1.52
TRAPPC4-203ENST00000447216 ARHGEF10O15013 1369 aa24.56■■□□□ 1.52
TRAPPC4-203ENST00000447216 USP31Q70CQ4 1352 aa24.56■■□□□ 1.52
TRAPPC4-203ENST00000447216 ABCA3Q99758 1704 aa24.56■■□□□ 1.52
TRAPPC4-203ENST00000447216 OVOS2A0A0J9YW53 1432 aa24.56■■□□□ 1.52
TRAPPC4-203ENST00000447216 OVOS2Q6IE36 1432 aa24.56■■□□□ 1.52
TRAPPC4-203ENST00000447216 NSD2O96028 1365 aa24.55■■□□□ 1.52
TRAPPC4-203ENST00000447216 NPC1L1Q9UHC9 1359 aa24.55■■□□□ 1.52
TRAPPC4-203ENST00000447216 MED1Q15648 1581 aaPredicted RBP24.55■■□□□ 1.52
TRAPPC4-203ENST00000447216 PHRF1Q9P1Y6 1649 aaKnown RBP24.55■■□□□ 1.52
TRAPPC4-203ENST00000447216 COG3Q96JB2 828 aa24.55■■□□□ 1.52
TRAPPC4-203ENST00000447216 PNPLA6Q8IY17 1366 aa24.54■■□□□ 1.52
TRAPPC4-203ENST00000447216 SHPRHQ149N8 1683 aa24.54■■□□□ 1.52
TRAPPC4-203ENST00000447216 COL22A1Q8NFW1 1626 aaPredicted RBP24.53■■□□□ 1.52
TRAPPC4-203ENST00000447216 DIEXFQ68CQ4 756 aaKnown RBP24.53■■□□□ 1.52
TRAPPC4-203ENST00000447216 NLRP13Q86W25 1043 aa24.53■■□□□ 1.52
TRAPPC4-203ENST00000447216 MORC1Q86VD1 984 aa24.52■■□□□ 1.52
TRAPPC4-203ENST00000447216 CABLES1Q8TDN4 633 aa24.52■■□□□ 1.52
TRAPPC4-203ENST00000447216 MAP2P11137 1827 aaKnown RBP24.51■■□□□ 1.51
TRAPPC4-203ENST00000447216 SOX12O15370 315 aa24.51■■□□□ 1.51
TRAPPC4-203ENST00000447216 TNNT2P45379 298 aaPredicted RBP24.5■■□□□ 1.51
TRAPPC4-203ENST00000447216 USP19O94966 1318 aa24.5■■□□□ 1.51
TRAPPC4-203ENST00000447216 SLIT3O75094 1523 aa24.5■■□□□ 1.51
TRAPPC4-203ENST00000447216 FBLN1P23142 703 aa24.48■■□□□ 1.51
TRAPPC4-203ENST00000447216 JCADQ9P266 1359 aa24.48■■□□□ 1.51
TRAPPC4-203ENST00000447216 LTN1O94822 1766 aa24.47■■□□□ 1.51
TRAPPC4-203ENST00000447216 NFAT5O94916 1531 aa24.46■■□□□ 1.51
TRAPPC4-203ENST00000447216 PARD3Q8TEW0 1356 aa24.46■■□□□ 1.51
TRAPPC4-203ENST00000447216 ANP32CO43423 234 aa24.44■■□□□ 1.5
TRAPPC4-203ENST00000447216 GCP02774 474 aa24.44■■□□□ 1.5
TRAPPC4-203ENST00000447216 PRKRIP1Q9H875 184 aaPredicted RBP24.44■■□□□ 1.5
TRAPPC4-203ENST00000447216 HAP1P54257 671 aaPredicted RBP24.43■■□□□ 1.5
TRAPPC4-203ENST00000447216 NUTM2BA6NNL0 878 aaPredicted RBP24.42■■□□□ 1.5
TRAPPC4-203ENST00000447216 NUTM2EB1AL46 878 aaPredicted RBP24.42■■□□□ 1.5
TRAPPC4-203ENST00000447216 NUTM2AQ8IVF1 878 aaPredicted RBP24.42■■□□□ 1.5
TRAPPC4-203ENST00000447216 RALBP1Q15311 655 aa24.41■■□□□ 1.5
TRAPPC4-203ENST00000447216 KCNH5Q8NCM2 988 aa24.41■■□□□ 1.5
TRAPPC4-203ENST00000447216 ZBTB7CA1YPR0 619 aa24.4■■□□□ 1.5
TRAPPC4-203ENST00000447216 ZC3H6P61129 1189 aaKnown RBP24.4■■□□□ 1.5
TRAPPC4-203ENST00000447216 RRS1Q15050 365 aaKnown RBP24.4■■□□□ 1.5
TRAPPC4-203ENST00000447216 RGPD5Q99666 1765 aa24.39■■□□□ 1.5
TRAPPC4-203ENST00000447216 PEAK1Q9H792 1746 aa24.39■■□□□ 1.5
TRAPPC4-203ENST00000447216 PPP2R1AP30153 589 aa24.38■■□□□ 1.49
TRAPPC4-203ENST00000447216 EMILIN1Q9Y6C2 1016 aa24.37■■□□□ 1.49
TRAPPC4-203ENST00000447216 AATKQ6ZMQ8 1374 aa24.37■■□□□ 1.49
TRAPPC4-203ENST00000447216 MAP3K19Q56UN5 1328 aa24.36■■□□□ 1.49
TRAPPC4-203ENST00000447216 POLKQ9UBT6 870 aa24.36■■□□□ 1.49
TRAPPC4-203ENST00000447216 KIAA0232Q92628 1395 aa24.36■■□□□ 1.49
TRAPPC4-203ENST00000447216 LRP6O75581 1613 aa24.35■■□□□ 1.49
TRAPPC4-203ENST00000447216 COL18A1P39060 1754 aa24.35■■□□□ 1.49
TRAPPC4-203ENST00000447216 SPATA31A6Q5VVP1 1343 aa24.35■■□□□ 1.49
TRAPPC4-203ENST00000447216 MYBBP1AQ9BQG0 1328 aaKnown RBP24.35■■□□□ 1.49
TRAPPC4-203ENST00000447216 ADAMTS2O95450 1211 aa24.34■■□□□ 1.49
TRAPPC4-203ENST00000447216 ARHGEF25Q86VW2 580 aa24.34■■□□□ 1.49
TRAPPC4-203ENST00000447216 PPM1GO15355 546 aaPredicted RBP24.33■■□□□ 1.49
TRAPPC4-203ENST00000447216 CHRNA2Q15822 529 aa24.33■■□□□ 1.49
TRAPPC4-203ENST00000447216 CPDO75976 1380 aa24.32■■□□□ 1.48
TRAPPC4-203ENST00000447216 MTHFSP49914 203 aa24.32■■□□□ 1.48
TRAPPC4-203ENST00000447216 SMG6Q86US8 1419 aaKnown RBP24.31■■□□□ 1.48
TRAPPC4-203ENST00000447216 MIER1Q8N108 512 aa24.31■■□□□ 1.48
TRAPPC4-203ENST00000447216 PRDM11Q9NQV5 511 aa24.31■■□□□ 1.48
TRAPPC4-203ENST00000447216 COL14A1Q05707 1796 aaKnown RBP24.3■■□□□ 1.48
TRAPPC4-203ENST00000447216 AMPHP49418 695 aa24.3■■□□□ 1.48
TRAPPC4-203ENST00000447216 ILDR1Q86SU0 546 aaPredicted RBP24.3■■□□□ 1.48
TRAPPC4-203ENST00000447216 PLCH1Q4KWH8 1693 aa24.3■■□□□ 1.48
Retrieved 100 of 20,778 RNA–protein pairs in 13.8 ms