RNA–Protein interactions for RNA: ENST00000444458.5

CCDC88A-208, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 2

Gene CCDC88A, Length 4,236 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-208ENST00000444458 CAPN10Q9HC96 672 aa3.23□□□□□ -1.89
CCDC88A-208ENST00000444458 HMX1Q9NP08 348 aaPredicted RBP3.23□□□□□ -1.89
CCDC88A-208ENST00000444458 ANO2Q9NQ90 1003 aa3.23□□□□□ -1.89
CCDC88A-208ENST00000444458 BCCIPQ9P287 314 aaKnown RBP eCLIP3.23□□□□□ -1.89
CCDC88A-208ENST00000444458 ZMIZ1Q9ULJ6 1067 aa3.23□□□□□ -1.89
CCDC88A-208ENST00000444458 IQSEC3Q9UPP2 1182 aaPredicted RBP3.23□□□□□ -1.89
CCDC88A-208ENST00000444458 RECKO95980 971 aa3.22□□□□□ -1.89
CCDC88A-208ENST00000444458 VAMP1P23763 118 aa3.22□□□□□ -1.89
CCDC88A-208ENST00000444458 ITGAEP38570 1179 aa3.22□□□□□ -1.89
CCDC88A-208ENST00000444458 ELOAQ14241 798 aaKnown RBP3.22□□□□□ -1.89
CCDC88A-208ENST00000444458 DEPDC4Q8N2C3 294 aa3.22□□□□□ -1.89
CCDC88A-208ENST00000444458 SCAMP3O14828 347 aaKnown RBP3.22□□□□□ -1.89
CCDC88A-208ENST00000444458 PHF14O94880 888 aa3.22□□□□□ -1.89
CCDC88A-208ENST00000444458 FDX1P10109 184 aa3.22□□□□□ -1.89
CCDC88A-208ENST00000444458 XPCQ01831 940 aaPredicted RBP3.22□□□□□ -1.89
CCDC88A-208ENST00000444458 TYW1BQ6NUM6 668 aa3.22□□□□□ -1.89
CCDC88A-208ENST00000444458 ZNF662Q6ZS27 426 aa3.22□□□□□ -1.89
CCDC88A-208ENST00000444458 CERKQ8TCT0 537 aa3.22□□□□□ -1.89
CCDC88A-208ENST00000444458 LRRN4Q8WUT4 740 aa3.22□□□□□ -1.89
CCDC88A-208ENST00000444458 RBM27Q9P2N5 1060 aaKnown RBP3.22□□□□□ -1.89
CCDC88A-208ENST00000444458 PRKAG2Q9UGJ0 569 aa3.22□□□□□ -1.89
CCDC88A-208ENST00000444458 BRPF3Q9ULD4 1205 aa3.22□□□□□ -1.89
CCDC88A-208ENST00000444458 USP17L3A6NCW0 530 aa3.22□□□□□ -1.89
CCDC88A-208ENST00000444458 USP17L4A6NCW7 530 aa3.22□□□□□ -1.89
CCDC88A-208ENST00000444458 KIF3CO14782 793 aa3.22□□□□□ -1.89
CCDC88A-208ENST00000444458 PRPF38BQ5VTL8 546 aaKnown RBP3.22□□□□□ -1.89
CCDC88A-208ENST00000444458 USP17L2Q6R6M4 530 aa3.22□□□□□ -1.89
CCDC88A-208ENST00000444458 USP17L1Q7RTZ2 530 aa3.22□□□□□ -1.89
CCDC88A-208ENST00000444458 DHX38Q92620 1227 aaKnown RBP3.22□□□□□ -1.89
CCDC88A-208ENST00000444458 RAB11FIP3O75154 756 aa3.21□□□□□ -1.89
CCDC88A-208ENST00000444458 TAGLNQ01995 201 aaKnown RBP3.21□□□□□ -1.89
CCDC88A-208ENST00000444458 ZNF211Q13398 564 aaPredicted RBP3.21□□□□□ -1.89
CCDC88A-208ENST00000444458 TMEM87AQ8NBN3 555 aa3.21□□□□□ -1.89
CCDC88A-208ENST00000444458 LNPKQ9C0E8 428 aa3.21□□□□□ -1.89
CCDC88A-208ENST00000444458 PLEKHD1A6NEE1 506 aa3.21□□□□□ -1.9
CCDC88A-208ENST00000444458 USP17L15C9J2P7 530 aa3.21□□□□□ -1.9
CCDC88A-208ENST00000444458 USP17L10C9JJH3 530 aa3.21□□□□□ -1.9
CCDC88A-208ENST00000444458 USP17L13C9JLJ4 530 aa3.21□□□□□ -1.9
CCDC88A-208ENST00000444458 USP17L12C9JPN9 530 aa3.21□□□□□ -1.9
CCDC88A-208ENST00000444458 USP17L11C9JVI0 530 aa3.21□□□□□ -1.9
CCDC88A-208ENST00000444458 USP17L21D6R901 530 aa3.21□□□□□ -1.9
CCDC88A-208ENST00000444458 USP17L18D6R9N7 530 aa3.21□□□□□ -1.9
CCDC88A-208ENST00000444458 USP17L22D6RA61 530 aa3.21□□□□□ -1.9
CCDC88A-208ENST00000444458 USP17L17D6RBQ6 530 aa3.21□□□□□ -1.9
CCDC88A-208ENST00000444458 USP17L19D6RCP7 530 aa3.21□□□□□ -1.9
CCDC88A-208ENST00000444458 USP17L20D6RJB6 530 aa3.21□□□□□ -1.9
CCDC88A-208ENST00000444458 CD46P15529 392 aa3.21□□□□□ -1.9
CCDC88A-208ENST00000444458 DNAJA1P31689 397 aaKnown RBP3.21□□□□□ -1.9
CCDC88A-208ENST00000444458 USP17L24Q0WX57 530 aa3.21□□□□□ -1.9
CCDC88A-208ENST00000444458 BACH2Q9BYV9 841 aa3.21□□□□□ -1.9
CCDC88A-208ENST00000444458 ZSWIM6Q9HCJ5 1215 aa3.21□□□□□ -1.9
CCDC88A-208ENST00000444458 MKRN1Q9UHC7 482 aaKnown RBP3.21□□□□□ -1.9
CCDC88A-208ENST00000444458 PPME1Q9Y570 386 aa3.21□□□□□ -1.9
CCDC88A-208ENST00000444458 RPL17-C18orf32A0A0A6YYL6 228 aaKnown RBP3.21□□□□□ -1.9
CCDC88A-208ENST00000444458 USP17L5A8MUK1 530 aa3.21□□□□□ -1.9
CCDC88A-208ENST00000444458 PHLDB3Q6NSJ2 640 aa3.21□□□□□ -1.9
CCDC88A-208ENST00000444458 TMC1Q8TDI8 760 aa3.21□□□□□ -1.9
CCDC88A-208ENST00000444458 TRIM34Q9BYJ4 488 aa3.21□□□□□ -1.9
CCDC88A-208ENST00000444458 ZSWIM4Q9H7M6 989 aa3.21□□□□□ -1.9
CCDC88A-208ENST00000444458 BOLA1Q9Y3E2 137 aa3.21□□□□□ -1.9
CCDC88A-208ENST00000444458 ZC3H4Q9UPT8 1303 aaKnown RBP3.21□□□□□ -1.9
CCDC88A-208ENST00000444458 KANK4Q5T7N3 995 aaPredicted RBP3.2□□□□□ -1.9
CCDC88A-208ENST00000444458 TPD52L2O43399 206 aaKnown RBP3.2□□□□□ -1.9
CCDC88A-208ENST00000444458 GJA5P36382 358 aa3.2□□□□□ -1.9
CCDC88A-208ENST00000444458 RNF187Q5TA31 235 aaPredicted RBP3.2□□□□□ -1.9
CCDC88A-208ENST00000444458 METTL14Q9HCE5 456 aaKnown RBP3.2□□□□□ -1.9
CCDC88A-208ENST00000444458 RCCD1A6NED2 376 aa3.2□□□□□ -1.9
CCDC88A-208ENST00000444458 FAM196BA6NMK8 535 aa3.2□□□□□ -1.9
CCDC88A-208ENST00000444458 C6orf229H3BNL8 230 aa3.2□□□□□ -1.9
CCDC88A-208ENST00000444458 PIK3R5Q8WYR1 880 aa3.2□□□□□ -1.9
CCDC88A-208ENST00000444458 CDCA7Q9BWT1 371 aaPredicted RBP3.2□□□□□ -1.9
CCDC88A-208ENST00000444458 LZTS3O60299 673 aaPredicted RBP3.2□□□□□ -1.9
CCDC88A-208ENST00000444458 HOXB1P14653 301 aaPredicted RBP3.2□□□□□ -1.9
CCDC88A-208ENST00000444458 NT5DC4Q86YG4 428 aa3.2□□□□□ -1.9
CCDC88A-208ENST00000444458 CLP1Q92989 425 aaKnown RBP3.2□□□□□ -1.9
CCDC88A-208ENST00000444458 ZNF594Q96JF6 807 aaPredicted RBP3.2□□□□□ -1.9
CCDC88A-208ENST00000444458 CCDC136Q96JN2 1154 aa3.2□□□□□ -1.9
CCDC88A-208ENST00000444458 DCTN4Q9UJW0 460 aa3.2□□□□□ -1.9
CCDC88A-208ENST00000444458 MTMR2Q13614 643 aa3.19□□□□□ -1.9
CCDC88A-208ENST00000444458 PTPROQ16827 1216 aa3.19□□□□□ -1.9
CCDC88A-208ENST00000444458 CCDC144BQ3MJ40 725 aa3.19□□□□□ -1.9
CCDC88A-208ENST00000444458 HSP90AB2PQ58FF8 381 aa3.19□□□□□ -1.9
CCDC88A-208ENST00000444458 NOM1Q5C9Z4 860 aaKnown RBP3.19□□□□□ -1.9
CCDC88A-208ENST00000444458 SDE2Q6IQ49 451 aa3.19□□□□□ -1.9
CCDC88A-208ENST00000444458 RIPOR2Q9Y4F9 1068 aa3.19□□□□□ -1.9
CCDC88A-208ENST00000444458 SBNO2Q9Y2G9 1366 aa3.19□□□□□ -1.9
CCDC88A-208ENST00000444458 TLDC2A0PJX2 215 aa3.19□□□□□ -1.9
CCDC88A-208ENST00000444458 HMGB1P1B2RPK0 211 aaPredicted RBP3.19□□□□□ -1.9
CCDC88A-208ENST00000444458 ATP5J2-PTCD1G3V325 749 aa3.19□□□□□ -1.9
CCDC88A-208ENST00000444458 PIK3CDO00329 1044 aa3.19□□□□□ -1.9
CCDC88A-208ENST00000444458 PRMT3O60678 531 aa3.19□□□□□ -1.9
CCDC88A-208ENST00000444458 RGS20O76081 388 aa3.19□□□□□ -1.9
CCDC88A-208ENST00000444458 SCNN1AP37088 669 aa3.19□□□□□ -1.9
CCDC88A-208ENST00000444458 HDLBPQ00341 1268 aaKnown RBP3.19□□□□□ -1.9
CCDC88A-208ENST00000444458 SLFNL1Q499Z3 407 aa3.19□□□□□ -1.9
CCDC88A-208ENST00000444458 ANKMY2Q8IV38 441 aa3.19□□□□□ -1.9
CCDC88A-208ENST00000444458 EXOC8Q8IYI6 725 aa3.19□□□□□ -1.9
CCDC88A-208ENST00000444458 ZCRB1Q8TBF4 217 aaKnown RBP3.19□□□□□ -1.9
CCDC88A-208ENST00000444458 LOC102724159A0A0B4J2E5 919 aa3.19□□□□□ -1.9
CCDC88A-208ENST00000444458 PWP2Q15269 919 aaKnown RBP3.19□□□□□ -1.9
Retrieved 100 of 20,778 RNA–protein pairs in 22.7 ms