RNA–Protein interactions for RNA: ENST00000443443.1

VPS50-206, Transcript of VPS50, EARP/GARPII complex subunit, humanhuman

TSL 2

Gene VPS50, Length 554 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS50-206ENST00000443443 BAP1Q92560 729 aa10.64□□□□□ -0.71
VPS50-206ENST00000443443 PER1O15534 1290 aaPredicted RBP10.63□□□□□ -0.71
VPS50-206ENST00000443443 MYT1Q01538 1121 aa10.63□□□□□ -0.71
VPS50-206ENST00000443443 TOR4AQ9NXH8 423 aa10.63□□□□□ -0.71
VPS50-206ENST00000443443 EHBP1Q8NDI1 1231 aa10.62□□□□□ -0.71
VPS50-206ENST00000443443 SNIP1Q8TAD8 396 aaKnown RBP10.62□□□□□ -0.71
VPS50-206ENST00000443443 BRPF1P55201 1214 aaPredicted RBP10.61□□□□□ -0.71
VPS50-206ENST00000443443 SH3BP2P78314 561 aa10.61□□□□□ -0.71
VPS50-206ENST00000443443 MAP10Q9P2G4 905 aa10.61□□□□□ -0.71
VPS50-206ENST00000443443 CTDSPL2Q05D32 466 aa10.59□□□□□ -0.71
VPS50-206ENST00000443443 PCMTD1Q96MG8 357 aaPredicted RBP10.58□□□□□ -0.72
VPS50-206ENST00000443443 POTECB2RU33 542 aa10.57□□□□□ -0.72
VPS50-206ENST00000443443 J3QL48 77 aa10.57□□□□□ -0.72
VPS50-206ENST00000443443 ALDH1A1P00352 501 aa10.57□□□□□ -0.72
VPS50-206ENST00000443443 PRKCSHP14314 528 aaPredicted RBP10.57□□□□□ -0.72
VPS50-206ENST00000443443 ZNF511Q8NB15 262 aa10.57□□□□□ -0.72
VPS50-206ENST00000443443 GNL3Q9BVP2 549 aaKnown RBP eCLIP10.57□□□□□ -0.72
VPS50-206ENST00000443443 ST8SIA5O15466 376 aa10.56□□□□□ -0.72
VPS50-206ENST00000443443 AP1G2O75843 785 aa10.56□□□□□ -0.72
VPS50-206ENST00000443443 F12P00748 615 aaPredicted RBP10.56□□□□□ -0.72
VPS50-206ENST00000443443 AGERQ15109 404 aa10.56□□□□□ -0.72
VPS50-206ENST00000443443 FBXO31Q5XUX0 539 aaPredicted RBP10.55□□□□□ -0.72
VPS50-206ENST00000443443 ZNF775Q96BV0 537 aaPredicted RBP10.55□□□□□ -0.72
VPS50-206ENST00000443443 SMPD1P17405 629 aa10.54□□□□□ -0.72
VPS50-206ENST00000443443 PPP2R2DQ66LE6 453 aa10.53□□□□□ -0.72
VPS50-206ENST00000443443 ARMC2Q8NEN0 867 aa10.53□□□□□ -0.72
VPS50-206ENST00000443443 AXIN1O15169 862 aa10.52□□□□□ -0.73
VPS50-206ENST00000443443 LRRN4Q8WUT4 740 aa10.52□□□□□ -0.73
VPS50-206ENST00000443443 GOPCQ9HD26 462 aa10.52□□□□□ -0.73
VPS50-206ENST00000443443 AAASQ9NRG9 546 aa10.52□□□□□ -0.73
VPS50-206ENST00000443443 WASF2Q9Y6W5 498 aa10.52□□□□□ -0.73
VPS50-206ENST00000443443 SIAH2O43255 324 aa10.51□□□□□ -0.73
VPS50-206ENST00000443443 VARSP26640 1264 aaKnown RBP10.51□□□□□ -0.73
VPS50-206ENST00000443443 FOXJ1Q92949 421 aa10.51□□□□□ -0.73
VPS50-206ENST00000443443 HPS1Q92902 700 aa10.5□□□□□ -0.73
VPS50-206ENST00000443443 AVPP01185 164 aa10.49□□□□□ -0.73
VPS50-206ENST00000443443 RFC5P40937 340 aa10.49□□□□□ -0.73
VPS50-206ENST00000443443 ARID5BQ14865 1188 aa10.49□□□□□ -0.73
VPS50-206ENST00000443443 FAM174AQ8TBP5 190 aa10.49□□□□□ -0.73
VPS50-206ENST00000443443 CTC1Q2NKJ3 1217 aa10.48□□□□□ -0.73
VPS50-206ENST00000443443 BPHLQ86WA6 291 aaPredicted RBP10.48□□□□□ -0.73
VPS50-206ENST00000443443 NR6A1Q15406 480 aa10.47□□□□□ -0.73
VPS50-206ENST00000443443 NBPF14Q5TI25 921 aa10.47□□□□□ -0.73
VPS50-206ENST00000443443 TLL2Q9Y6L7 1015 aa10.47□□□□□ -0.73
VPS50-206ENST00000443443 DACH1Q9UI36 760 aa10.46□□□□□ -0.73
VPS50-206ENST00000443443 MAGEB6P1A0A0J9YX57 407 aa10.45□□□□□ -0.74
VPS50-206ENST00000443443 USP17L8P0C7I0 530 aa10.44□□□□□ -0.74
VPS50-206ENST00000443443 TMEM259Q4ZIN3 620 aa10.44□□□□□ -0.74
VPS50-206ENST00000443443 CRIPAKQ8N1N5 446 aa10.44□□□□□ -0.74
VPS50-206ENST00000443443 SMCPP49901 116 aaPredicted RBP10.43□□□□□ -0.74
VPS50-206ENST00000443443 C4orf48Q5BLP8 95 aa10.43□□□□□ -0.74
VPS50-206ENST00000443443 CARD14Q9BXL6 1004 aa10.43□□□□□ -0.74
VPS50-206ENST00000443443 FKBPLQ9UIM3 349 aa10.42□□□□□ -0.74
VPS50-206ENST00000443443 GPKOWQ92917 476 aaPredicted RBP eCLIP10.41□□□□□ -0.74
VPS50-206ENST00000443443 MPNDQ8N594 471 aa10.4□□□□□ -0.74
VPS50-206ENST00000443443 PNMA1Q8ND90 353 aa10.4□□□□□ -0.74
VPS50-206ENST00000443443 EPS8L1Q8TE68 723 aa10.4□□□□□ -0.74
VPS50-206ENST00000443443 HMX1Q9NP08 348 aaPredicted RBP10.4□□□□□ -0.74
VPS50-206ENST00000443443 NNTQ13423 1086 aa10.39□□□□□ -0.75
VPS50-206ENST00000443443 PDXDC2PQ6P474 469 aa10.39□□□□□ -0.75
VPS50-206ENST00000443443 SH3BP5LQ7L8J4 393 aa10.39□□□□□ -0.75
VPS50-206ENST00000443443 ARHGAP9Q9BRR9 750 aa10.39□□□□□ -0.75
VPS50-206ENST00000443443 CAPN5O15484 640 aaPredicted RBP10.38□□□□□ -0.75
VPS50-206ENST00000443443 SH3RF1Q7Z6J0 888 aa10.38□□□□□ -0.75
VPS50-206ENST00000443443 ZBTB33Q86T24 672 aa10.38□□□□□ -0.75
VPS50-206ENST00000443443 CDK15Q96Q40 435 aa10.38□□□□□ -0.75
VPS50-206ENST00000443443 GMPR2Q9P2T1 348 aaKnown RBP10.38□□□□□ -0.75
VPS50-206ENST00000443443 C11orf95C9JLR9 678 aaPredicted RBP10.37□□□□□ -0.75
VPS50-206ENST00000443443 ADH1CP00326 375 aa10.37□□□□□ -0.75
VPS50-206ENST00000443443 ATP13A2Q9NQ11 1180 aa10.37□□□□□ -0.75
VPS50-206ENST00000443443 PTK2Q05397 1052 aa10.36□□□□□ -0.75
VPS50-206ENST00000443443 VASH1Q7L8A9 365 aaPredicted RBP10.36□□□□□ -0.75
VPS50-206ENST00000443443 WDR4P57081 412 aaKnown RBP10.35□□□□□ -0.75
VPS50-206ENST00000443443 ZC3H4Q9UPT8 1303 aaKnown RBP10.34□□□□□ -0.75
VPS50-206ENST00000443443 GRM5P41594 1212 aa10.34□□□□□ -0.75
VPS50-206ENST00000443443 NR5A1Q13285 461 aa10.34□□□□□ -0.75
VPS50-206ENST00000443443 ERFEQ4G0M1 354 aa10.33□□□□□ -0.76
VPS50-206ENST00000443443 C1QTNF2Q9BXJ5 285 aa10.33□□□□□ -0.76
VPS50-206ENST00000443443 BMP1P13497 986 aa10.31□□□□□ -0.76
VPS50-206ENST00000443443 FSHRP23945 695 aa10.31□□□□□ -0.76
VPS50-206ENST00000443443 TRMT44Q8IYL2 757 aaKnown RBP10.31□□□□□ -0.76
VPS50-206ENST00000443443 SLC10A4Q96EP9 437 aa10.31□□□□□ -0.76
VPS50-206ENST00000443443 TRIM34Q9BYJ4 488 aa10.31□□□□□ -0.76
VPS50-206ENST00000443443 SENP2Q9HC62 589 aa10.31□□□□□ -0.76
VPS50-206ENST00000443443 ZIC2O95409 532 aaPredicted RBP10.3□□□□□ -0.76
VPS50-206ENST00000443443 NR3C2P08235 984 aa10.3□□□□□ -0.76
VPS50-206ENST00000443443 LCE2AQ5TA79 106 aaPredicted RBP10.3□□□□□ -0.76
VPS50-206ENST00000443443 BANK1Q8NDB2 785 aa10.3□□□□□ -0.76
VPS50-206ENST00000443443 ADAM32Q8TC27 787 aa10.3□□□□□ -0.76
VPS50-206ENST00000443443 GPSM3Q9Y4H4 160 aa10.3□□□□□ -0.76
VPS50-206ENST00000443443 TIMP2P16035 220 aa10.29□□□□□ -0.76
VPS50-206ENST00000443443 MAP4K5Q9Y4K4 846 aa10.29□□□□□ -0.76
VPS50-206ENST00000443443 TREML4Q6UXN2 200 aa10.28□□□□□ -0.76
VPS50-206ENST00000443443 ITPKCQ96DU7 683 aa10.28□□□□□ -0.76
VPS50-206ENST00000443443 ZFAND3Q9H8U3 227 aa10.28□□□□□ -0.76
VPS50-206ENST00000443443 SNRPBP14678 240 aaKnown RBP10.27□□□□□ -0.77
VPS50-206ENST00000443443 DZIP3Q86Y13 1208 aaKnown RBP10.27□□□□□ -0.77
VPS50-206ENST00000443443 GJD4Q96KN9 370 aaPredicted RBP10.27□□□□□ -0.77
VPS50-206ENST00000443443 KCTD15Q96SI1 283 aaPredicted RBP10.27□□□□□ -0.77
VPS50-206ENST00000443443 OCSTAMPQ9BR26 566 aa10.27□□□□□ -0.77
Retrieved 100 of 20,778 RNA–protein pairs in 45.1 ms