RNA–Protein interactions for RNA: ENST00000441438.2

SYNE2-206, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 1 (best)

Gene SYNE2, Length 3,084 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-206ENST00000441438 PLSCR2Q9NRY7 297 aa13.41□□□□□ -0.26
SYNE2-206ENST00000441438 MYO5CQ9NQX4 1742 aa13.4□□□□□ -0.26
SYNE2-206ENST00000441438 NUP153P49790 1475 aaKnown RBP13.4□□□□□ -0.26
SYNE2-206ENST00000441438 EHBP1L1Q8N3D4 1523 aa13.4□□□□□ -0.26
SYNE2-206ENST00000441438 GYS2P54840 703 aa13.4□□□□□ -0.26
SYNE2-206ENST00000441438 C8orf37Q96NL8 207 aa13.4□□□□□ -0.26
SYNE2-206ENST00000441438 GNL3LQ9NVN8 582 aaKnown RBP13.4□□□□□ -0.26
SYNE2-206ENST00000441438 BCLAF1Q9NYF8 920 aaKnown RBP eCLIP13.4□□□□□ -0.26
SYNE2-206ENST00000441438 FAN1Q9Y2M0 1017 aa13.39□□□□□ -0.27
SYNE2-206ENST00000441438 HELBQ8NG08 1087 aaPredicted RBP13.39□□□□□ -0.27
SYNE2-206ENST00000441438 C11orf96Q7Z7L8 435 aa13.38□□□□□ -0.27
SYNE2-206ENST00000441438 ZNF513Q8N8E2 541 aaPredicted RBP13.38□□□□□ -0.27
SYNE2-206ENST00000441438 CCDC85AQ96PX6 553 aaPredicted RBP13.38□□□□□ -0.27
SYNE2-206ENST00000441438 KIF14Q15058 1648 aa13.37□□□□□ -0.27
SYNE2-206ENST00000441438 DPH6Q7L8W6 267 aa13.37□□□□□ -0.27
SYNE2-206ENST00000441438 PSME1Q06323 249 aa13.36□□□□□ -0.27
SYNE2-206ENST00000441438 MCM6Q14566 821 aa13.36□□□□□ -0.27
SYNE2-206ENST00000441438 PCF11O94913 1555 aaKnown RBP13.36□□□□□ -0.27
SYNE2-206ENST00000441438 MAST1Q9Y2H9 1570 aa13.36□□□□□ -0.27
SYNE2-206ENST00000441438 MTA1Q13330 715 aa13.36□□□□□ -0.27
SYNE2-206ENST00000441438 ANKRD23Q86SG2 305 aa13.36□□□□□ -0.27
SYNE2-206ENST00000441438 COMMD10Q9Y6G5 202 aa13.36□□□□□ -0.27
SYNE2-206ENST00000441438 ZRANB2O95218 330 aaKnown RBP eCLIP13.36□□□□□ -0.27
SYNE2-206ENST00000441438 TMX4Q9H1E5 349 aaPredicted RBP13.36□□□□□ -0.27
SYNE2-206ENST00000441438 NRBP1Q9UHY1 535 aa13.36□□□□□ -0.27
SYNE2-206ENST00000441438 WDHD1O75717 1129 aaPredicted RBP13.35□□□□□ -0.27
SYNE2-206ENST00000441438 STK10O94804 968 aaKnown RBP13.35□□□□□ -0.27
SYNE2-206ENST00000441438 PPP4CP60510 307 aa13.35□□□□□ -0.27
SYNE2-206ENST00000441438 DMRT2Q9Y5R5 561 aa13.35□□□□□ -0.27
SYNE2-206ENST00000441438 FEZ2Q9UHY8 353 aaPredicted RBP13.35□□□□□ -0.27
SYNE2-206ENST00000441438 PDE4DQ08499 809 aa13.34□□□□□ -0.27
SYNE2-206ENST00000441438 LARGE2Q8N3Y3 721 aa13.34□□□□□ -0.27
SYNE2-206ENST00000441438 C4orf46Q504U0 113 aa13.34□□□□□ -0.27
SYNE2-206ENST00000441438 AMOTL1Q8IY63 956 aa13.34□□□□□ -0.27
SYNE2-206ENST00000441438 CLIP1P30622 1438 aa13.34□□□□□ -0.27
SYNE2-206ENST00000441438 ATP10BO94823 1461 aa13.33□□□□□ -0.28
SYNE2-206ENST00000441438 MAGI2Q86UL8 1455 aa13.33□□□□□ -0.28
SYNE2-206ENST00000441438 EIF3JO75822 258 aaKnown RBP13.33□□□□□ -0.28
SYNE2-206ENST00000441438 PUS10Q3MIT2 529 aaKnown RBP13.33□□□□□ -0.28
SYNE2-206ENST00000441438 CENPJQ9HC77 1338 aaPredicted RBP13.33□□□□□ -0.28
SYNE2-206ENST00000441438 NBPF10Q6P3W6 841 aaKnown RBP13.32□□□□□ -0.28
SYNE2-206ENST00000441438 KDM5CP41229 1560 aa13.32□□□□□ -0.28
SYNE2-206ENST00000441438 VGLL3A8MV65 326 aa13.32□□□□□ -0.28
SYNE2-206ENST00000441438 ITGAEP38570 1179 aa13.32□□□□□ -0.28
SYNE2-206ENST00000441438 NBPF6Q5VWK0 638 aa13.32□□□□□ -0.28
SYNE2-206ENST00000441438 NBPF5PQ86XG9 351 aaPredicted RBP13.32□□□□□ -0.28
SYNE2-206ENST00000441438 NBPF4Q96M43 638 aa13.32□□□□□ -0.28
SYNE2-206ENST00000441438 ARHGEF5Q12774 1597 aa13.32□□□□□ -0.28
SYNE2-206ENST00000441438 CFAP69A5D8W1 941 aa13.31□□□□□ -0.28
SYNE2-206ENST00000441438 SUPT16HQ9Y5B9 1047 aaKnown RBP13.31□□□□□ -0.28
SYNE2-206ENST00000441438 RICTORQ6R327 1708 aa13.31□□□□□ -0.28
SYNE2-206ENST00000441438 CHPF2Q9P2E5 772 aa13.31□□□□□ -0.28
SYNE2-206ENST00000441438 TIAM1Q13009 1591 aa13.31□□□□□ -0.28
SYNE2-206ENST00000441438 TPX2Q9ULW0 747 aaKnown RBP13.3□□□□□ -0.28
SYNE2-206ENST00000441438 PLEKHH2Q8IVE3 1493 aa13.3□□□□□ -0.28
SYNE2-206ENST00000441438 SUPT6HQ7KZ85 1726 aaKnown RBP13.3□□□□□ -0.28
SYNE2-206ENST00000441438 FBXO9Q9UK97 447 aaPredicted RBP13.29□□□□□ -0.28
SYNE2-206ENST00000441438 JADE2Q9NQC1 790 aa13.28□□□□□ -0.28
SYNE2-206ENST00000441438 CDC42BPAQ5VT25 1732 aa13.28□□□□□ -0.28
SYNE2-206ENST00000441438 POLA2Q14181 598 aa13.28□□□□□ -0.28
SYNE2-206ENST00000441438 COPB2P35606 906 aa13.28□□□□□ -0.28
SYNE2-206ENST00000441438 ASXL2Q76L83 1435 aa13.27□□□□□ -0.28
SYNE2-206ENST00000441438 TRIM66O15016 1216 aa13.27□□□□□ -0.28
SYNE2-206ENST00000441438 IRF2BPLQ9H1B7 796 aa13.27□□□□□ -0.28
SYNE2-206ENST00000441438 TROQ12816 1431 aaPredicted RBP13.27□□□□□ -0.29
SYNE2-206ENST00000441438 NAALADL2Q58DX5 795 aa13.27□□□□□ -0.29
SYNE2-206ENST00000441438 NOP58Q9Y2X3 529 aaKnown RBP13.27□□□□□ -0.29
SYNE2-206ENST00000441438 PROCA1Q8NCQ7 364 aaPredicted RBP13.26□□□□□ -0.29
SYNE2-206ENST00000441438 ZCRB1Q8TBF4 217 aaKnown RBP13.26□□□□□ -0.29
SYNE2-206ENST00000441438 CEP126Q9P2H0 1117 aa13.26□□□□□ -0.29
SYNE2-206ENST00000441438 VPS8Q8N3P4 1428 aa13.26□□□□□ -0.29
SYNE2-206ENST00000441438 ZC3H6P61129 1189 aaKnown RBP13.26□□□□□ -0.29
SYNE2-206ENST00000441438 CROCC2H7BZ55 1655 aa13.26□□□□□ -0.29
SYNE2-206ENST00000441438 NGEFQ8N5V2 710 aa13.26□□□□□ -0.29
SYNE2-206ENST00000441438 CTDP1Q9Y5B0 961 aaPredicted RBP13.26□□□□□ -0.29
SYNE2-206ENST00000441438 CCDC189A1A4V9 331 aa13.25□□□□□ -0.29
SYNE2-206ENST00000441438 C11orf95C9JLR9 678 aaPredicted RBP13.25□□□□□ -0.29
SYNE2-206ENST00000441438 MAP2K1Q02750 393 aaPredicted RBP13.25□□□□□ -0.29
SYNE2-206ENST00000441438 RNF25Q96BH1 459 aaPredicted RBP13.25□□□□□ -0.29
SYNE2-206ENST00000441438 GEMIN5Q8TEQ6 1508 aaKnown RBP eCLIP13.25□□□□□ -0.29
SYNE2-206ENST00000441438 CDC42BPBQ9Y5S2 1711 aa13.25□□□□□ -0.29
SYNE2-206ENST00000441438 ZNF16P17020 682 aaPredicted RBP13.25□□□□□ -0.29
SYNE2-206ENST00000441438 CADPS2Q86UW7 1296 aa13.25□□□□□ -0.29
SYNE2-206ENST00000441438 DROSHAQ9NRR4 1374 aaKnown RBP eCLIP13.25□□□□□ -0.29
SYNE2-206ENST00000441438 EIF2AK4Q9P2K8 1649 aaKnown RBP13.24□□□□□ -0.29
SYNE2-206ENST00000441438 PPP1R15AO75807 674 aaPredicted RBP13.24□□□□□ -0.29
SYNE2-206ENST00000441438 FAM69CQ0P6D2 419 aa13.24□□□□□ -0.29
SYNE2-206ENST00000441438 WWC3Q9ULE0 1092 aa13.24□□□□□ -0.29
SYNE2-206ENST00000441438 LMOD3Q0VAK6 560 aa13.24□□□□□ -0.29
SYNE2-206ENST00000441438 FRMPD1Q5SYB0 1578 aa13.24□□□□□ -0.29
SYNE2-206ENST00000441438 KIAA1107Q9UPP5 1409 aa13.24□□□□□ -0.29
SYNE2-206ENST00000441438 EVA1CP58658 441 aa13.24□□□□□ -0.29
SYNE2-206ENST00000441438 PDZRN3Q9UPQ7 1066 aa13.24□□□□□ -0.29
SYNE2-206ENST00000441438 ZBTB12Q9Y330 459 aaPredicted RBP13.24□□□□□ -0.29
SYNE2-206ENST00000441438 FHOD3Q2V2M9 1422 aa13.23□□□□□ -0.29
SYNE2-206ENST00000441438 AGLP35573 1532 aa13.23□□□□□ -0.29
SYNE2-206ENST00000441438 MROH2AA6NES4 1674 aa13.22□□□□□ -0.29
SYNE2-206ENST00000441438 hCG_2014768A0A024R1R8 64 aa13.22□□□□□ -0.29
SYNE2-206ENST00000441438 NEXNQ0ZGT2 675 aa13.22□□□□□ -0.29
SYNE2-206ENST00000441438 KANK4Q5T7N3 995 aaPredicted RBP13.22□□□□□ -0.29
Retrieved 100 of 20,778 RNA–protein pairs in 16.1 ms