RNA–Protein interactions for RNA: ENST00000439561.6

COPB1-202, Transcript of coatomer protein complex subunit beta 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COPB1, Length 3,382 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COPB1-202ENST00000439561 UQCRHP07919 91 aa11.15□□□□□ -0.62
COPB1-202ENST00000439561 NUCB2P80303 420 aa11.15□□□□□ -0.62
COPB1-202ENST00000439561 NPC1L1Q9UHC9 1359 aa11.15□□□□□ -0.62
COPB1-202ENST00000439561 PDCL3Q9H2J4 239 aa11.15□□□□□ -0.62
COPB1-202ENST00000439561 ZBTB40Q9NUA8 1239 aa11.15□□□□□ -0.62
COPB1-202ENST00000439561 CROCC2H7BZ55 1655 aa11.15□□□□□ -0.63
COPB1-202ENST00000439561 ABCC2Q92887 1545 aa11.14□□□□□ -0.63
COPB1-202ENST00000439561 SYCE3A1L190 88 aa11.14□□□□□ -0.63
COPB1-202ENST00000439561 SOX12O15370 315 aa11.14□□□□□ -0.63
COPB1-202ENST00000439561 BMP2KLQ5H9B9 411 aa11.14□□□□□ -0.63
COPB1-202ENST00000439561 SNX21Q969T3 373 aa11.14□□□□□ -0.63
COPB1-202ENST00000439561 RBM25P49756 843 aaKnown RBP11.14□□□□□ -0.63
COPB1-202ENST00000439561 SLC4A10Q6U841 1118 aa11.14□□□□□ -0.63
COPB1-202ENST00000439561 PRDM10Q9NQV6 1147 aa11.14□□□□□ -0.63
COPB1-202ENST00000439561 CDC42BPAQ5VT25 1732 aa11.14□□□□□ -0.63
COPB1-202ENST00000439561 HDGFL2Q7Z4V5 671 aaPredicted RBP11.13□□□□□ -0.63
COPB1-202ENST00000439561 CHAMP1Q96JM3 812 aa11.13□□□□□ -0.63
COPB1-202ENST00000439561 TERF2IPQ9NYB0 399 aa11.13□□□□□ -0.63
COPB1-202ENST00000439561 ADCY10Q96PN6 1610 aa11.13□□□□□ -0.63
COPB1-202ENST00000439561 CT47B1P0C2W7 299 aaPredicted RBP11.13□□□□□ -0.63
COPB1-202ENST00000439561 GCC1Q96CN9 775 aa11.13□□□□□ -0.63
COPB1-202ENST00000439561 KLHL40Q2TBA0 621 aa11.13□□□□□ -0.63
COPB1-202ENST00000439561 NLRP1Q9C000 1473 aa11.12□□□□□ -0.63
COPB1-202ENST00000439561 RABEP1Q15276 862 aa11.12□□□□□ -0.63
COPB1-202ENST00000439561 ZSCAN23Q3MJ62 389 aa11.12□□□□□ -0.63
COPB1-202ENST00000439561 PRIM1P49642 420 aaKnown RBP11.12□□□□□ -0.63
COPB1-202ENST00000439561 CCDC27Q2M243 656 aa11.12□□□□□ -0.63
COPB1-202ENST00000439561 SAMD9LQ8IVG5 1584 aa11.12□□□□□ -0.63
COPB1-202ENST00000439561 SMARCA5O60264 1052 aaPredicted RBP11.11□□□□□ -0.63
COPB1-202ENST00000439561 TRAPPC8Q9Y2L5 1435 aa11.11□□□□□ -0.63
COPB1-202ENST00000439561 TRIM6-TRIM34B2RNG4 842 aa11.11□□□□□ -0.63
COPB1-202ENST00000439561 PKP1Q13835 747 aa11.11□□□□□ -0.63
COPB1-202ENST00000439561 INTS3Q68E01 1043 aaKnown RBP11.11□□□□□ -0.63
COPB1-202ENST00000439561 C16orf71Q8IYS4 520 aaPredicted RBP11.11□□□□□ -0.63
COPB1-202ENST00000439561 ZGPATQ8N5A5 531 aaKnown RBP11.11□□□□□ -0.63
COPB1-202ENST00000439561 ZNF692Q9BU19 519 aaPredicted RBP11.11□□□□□ -0.63
COPB1-202ENST00000439561 NOS1P29475 1434 aa11.1□□□□□ -0.63
COPB1-202ENST00000439561 NEK4P51957 841 aa11.1□□□□□ -0.63
COPB1-202ENST00000439561 KIAA2012Q0VF49 1180 aa11.1□□□□□ -0.63
COPB1-202ENST00000439561 RBSNQ9H1K0 784 aa11.1□□□□□ -0.63
COPB1-202ENST00000439561 TRIM35Q9UPQ4 493 aa11.1□□□□□ -0.63
COPB1-202ENST00000439561 TWISTNBQ3B726 338 aaPredicted RBP11.1□□□□□ -0.63
COPB1-202ENST00000439561 RILPL2Q969X0 211 aa11.1□□□□□ -0.63
COPB1-202ENST00000439561 DUOX2Q9NRD8 1548 aa11.1□□□□□ -0.63
COPB1-202ENST00000439561 SYNMO15061 1565 aa11.1□□□□□ -0.63
COPB1-202ENST00000439561 ERVK-7P63135 1459 aa11.09□□□□□ -0.63
COPB1-202ENST00000439561 OFD1O75665 1012 aa11.09□□□□□ -0.63
COPB1-202ENST00000439561 TSPYL6Q8N831 410 aa11.09□□□□□ -0.63
COPB1-202ENST00000439561 DCTN1Q14203 1278 aa11.09□□□□□ -0.63
COPB1-202ENST00000439561 GDPD2Q9HCC8 539 aa11.08□□□□□ -0.64
COPB1-202ENST00000439561 ATAD2Q6PL18 1390 aa11.08□□□□□ -0.64
COPB1-202ENST00000439561 ARHGEF5Q12774 1597 aa11.08□□□□□ -0.64
COPB1-202ENST00000439561 REC8O95072 547 aa11.08□□□□□ -0.64
COPB1-202ENST00000439561 API5Q9BZZ5 524 aaKnown RBP11.08□□□□□ -0.64
COPB1-202ENST00000439561 ANO2Q9NQ90 1003 aa11.08□□□□□ -0.64
COPB1-202ENST00000439561 CSPP1Q1MSJ5 1256 aa11.07□□□□□ -0.64
COPB1-202ENST00000439561 BCL11BQ9C0K0 894 aaPredicted RBP11.07□□□□□ -0.64
COPB1-202ENST00000439561 CCDC39Q9UFE4 941 aa11.07□□□□□ -0.64
COPB1-202ENST00000439561 PTPRTO14522 1441 aa11.07□□□□□ -0.64
COPB1-202ENST00000439561 MCCP23508 829 aa11.07□□□□□ -0.64
COPB1-202ENST00000439561 SYAP1Q96A49 352 aaPredicted RBP11.07□□□□□ -0.64
COPB1-202ENST00000439561 MAST1Q9Y2H9 1570 aa11.07□□□□□ -0.64
COPB1-202ENST00000439561 CLASP1Q7Z460 1538 aa11.07□□□□□ -0.64
COPB1-202ENST00000439561 A0A0U1RQG5 324 aaPredicted RBP11.07□□□□□ -0.64
COPB1-202ENST00000439561 VGFO15240 615 aaPredicted RBP11.07□□□□□ -0.64
COPB1-202ENST00000439561 GNAI1P63096 354 aa11.07□□□□□ -0.64
COPB1-202ENST00000439561 OTUD7AQ8TE49 926 aaPredicted RBP11.07□□□□□ -0.64
COPB1-202ENST00000439561 CFAP44Q96MT7 982 aa11.07□□□□□ -0.64
COPB1-202ENST00000439561 TSHZ3Q63HK5 1081 aa11.06□□□□□ -0.64
COPB1-202ENST00000439561 ZNF830Q96NB3 372 aaPredicted RBP11.06□□□□□ -0.64
COPB1-202ENST00000439561 ZHX1Q9UKY1 873 aaPredicted RBP11.06□□□□□ -0.64
COPB1-202ENST00000439561 PRAM1Q96QH2 718 aa11.06□□□□□ -0.64
COPB1-202ENST00000439561 CABP1Q9NZU7 370 aa11.06□□□□□ -0.64
COPB1-202ENST00000439561 ZBTB7BO15156 539 aaPredicted RBP11.05□□□□□ -0.64
COPB1-202ENST00000439561 ALDH1L2Q3SY69 923 aa11.05□□□□□ -0.64
COPB1-202ENST00000439561 ABCA8O94911 1581 aa11.05□□□□□ -0.64
COPB1-202ENST00000439561 ABCC11Q96J66 1382 aa11.05□□□□□ -0.64
COPB1-202ENST00000439561 FAM83GA6ND36 823 aa11.05□□□□□ -0.64
COPB1-202ENST00000439561 KDM5AP29375 1690 aaKnown RBP11.05□□□□□ -0.64
COPB1-202ENST00000439561 ATP10AO60312 1499 aa11.05□□□□□ -0.64
COPB1-202ENST00000439561 MAP7D2Q96T17 732 aa11.05□□□□□ -0.64
COPB1-202ENST00000439561 PHF23Q9BUL5 403 aaPredicted RBP11.05□□□□□ -0.64
COPB1-202ENST00000439561 CHMP3Q9Y3E7 222 aa11.05□□□□□ -0.64
COPB1-202ENST00000439561 ZMYM3Q14202 1370 aa11.05□□□□□ -0.64
COPB1-202ENST00000439561 UGGT1Q9NYU2 1555 aa11.04□□□□□ -0.64
COPB1-202ENST00000439561 FAM177BA6PVY3 158 aa11.04□□□□□ -0.64
COPB1-202ENST00000439561 NECTIN2Q92692 538 aa11.04□□□□□ -0.64
COPB1-202ENST00000439561 PPP1R9BQ96SB3 815 aa11.04□□□□□ -0.64
COPB1-202ENST00000439561 KIF2CQ99661 725 aa11.04□□□□□ -0.64
COPB1-202ENST00000439561 UPF3BQ9BZI7 483 aaKnown RBP11.04□□□□□ -0.64
COPB1-202ENST00000439561 TSPY26PQ9H489 355 aa11.04□□□□□ -0.64
COPB1-202ENST00000439561 C14orf93Q9H972 538 aaKnown RBP11.04□□□□□ -0.64
COPB1-202ENST00000439561 FYB1O15117 783 aa11.03□□□□□ -0.64
COPB1-202ENST00000439561 NPM1P06748 294 aaKnown RBP eCLIP11.03□□□□□ -0.64
COPB1-202ENST00000439561 SDSP20132 328 aa11.03□□□□□ -0.64
COPB1-202ENST00000439561 ABCF1Q8NE71 845 aaKnown RBP eCLIP11.03□□□□□ -0.64
COPB1-202ENST00000439561 PHACTR3Q96KR7 559 aa11.03□□□□□ -0.64
COPB1-202ENST00000439561 CWC22Q9HCG8 908 aaKnown RBP11.03□□□□□ -0.64
COPB1-202ENST00000439561 LMBRD1Q9NUN5 540 aa11.03□□□□□ -0.64
COPB1-202ENST00000439561 GSPT1P15170 499 aaKnown RBP11.03□□□□□ -0.64
Retrieved 100 of 20,778 RNA–protein pairs in 47.1 ms